Wall clock time and date at job start Tue Mar 31 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 C 1.52998 * 109.47487 * 120.00476 * 2 1 3 5 5 N 1.46496 * 109.47117 * 64.99740 * 4 2 1 6 6 C 1.36040 * 120.40221 * 270.26982 * 5 4 2 7 7 C 1.36340 * 119.98633 * 180.28218 * 6 5 4 8 8 N 1.39842 * 119.60497 * 179.70442 * 7 6 5 9 9 C 1.46496 * 120.00002 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.46827 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46920 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46959 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99994 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99998 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99927 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46866 * 90.00069 * 16 14 12 18 18 H 1.48502 * 109.47044 * 209.99775 * 16 14 12 19 19 H 1.48497 * 109.47455 * 330.00303 * 16 14 12 20 20 N 1.33307 * 120.79375 * 359.72364 * 7 6 5 21 21 C 1.31140 * 120.81867 * 0.02562 * 20 7 6 22 22 C 1.35024 * 120.39942 * 90.00529 * 5 4 2 23 23 O 1.22063 * 120.38899 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46978 * 299.99476 * 1 2 3 26 26 H 1.08996 * 109.47558 * 60.00089 * 1 2 3 27 27 H 1.09007 * 109.46951 * 240.00146 * 2 1 3 28 28 H 1.09005 * 109.47241 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47202 * 299.99846 * 3 2 1 30 30 H 1.09000 * 109.46851 * 60.00446 * 3 2 1 31 31 H 1.08996 * 109.46881 * 305.00054 * 4 2 1 32 32 H 1.08997 * 109.46955 * 185.00213 * 4 2 1 33 33 H 1.07997 * 120.00481 * 0.02562 * 6 5 4 34 34 H 0.97000 * 119.99516 * 0.02562 * 8 7 6 35 35 H 1.08997 * 109.47358 * 299.99514 * 9 8 7 36 36 H 1.08994 * 109.47379 * 60.00076 * 9 8 7 37 37 H 1.08997 * 109.46675 * 299.99834 * 10 9 8 38 38 H 1.08999 * 109.47165 * 59.99366 * 10 9 8 39 39 H 1.08997 * 109.47265 * 299.99416 * 11 10 9 40 40 H 1.08994 * 109.47379 * 59.99921 * 11 10 9 41 41 H 0.96996 * 120.00067 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.01224 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 0.4654 -2.5432 1.7129 7 6 0.1157 -3.8599 1.6588 8 7 -1.1037 -4.2738 2.2039 9 6 -1.4878 -5.6866 2.1510 10 6 -2.8560 -5.8681 2.8114 11 6 -3.2568 -7.3437 2.7567 12 6 -4.6042 -7.5226 3.4078 13 1 -5.1228 -6.6692 3.8191 14 6 -5.1751 -8.7756 3.4775 15 7 -6.3507 -8.9319 4.0462 16 14 -4.2790 -10.2513 2.7643 17 1 -3.4161 -10.8588 3.8090 18 1 -5.2700 -11.2536 2.2965 19 1 -3.4387 -9.8149 1.6204 20 7 0.9225 -4.7575 1.0927 21 6 2.0718 -4.3958 0.5749 22 6 2.4669 -3.0415 0.6122 23 8 3.5346 -2.6964 0.1318 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1263 -0.6443 1.2950 33 1 -0.1981 -1.8267 2.1743 34 1 -1.6952 -3.6255 2.6171 35 1 -1.5409 -6.0100 1.1114 36 1 -0.7462 -6.2848 2.6802 37 1 -2.8033 -5.5446 3.8509 38 1 -3.5974 -5.2699 2.2819 39 1 -3.3094 -7.6676 1.7173 40 1 -2.5154 -7.9415 3.2866 41 1 -6.7525 -9.8134 4.0949 42 1 2.7151 -5.1338 0.1192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:47 Heat of formation + Delta-G solvation = -1.825822 kcal Electronic energy + Delta-G solvation = -21217.931082 eV Core-core repulsion = 18005.214840 eV Total energy + Delta-G solvation = -3212.716243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85872 -38.21576 -37.21425 -35.84337 -34.31903 -33.47719 -31.70404 -29.22438 -27.85135 -27.58215 -26.39240 -24.82867 -23.29744 -22.15929 -20.71595 -20.33474 -18.57517 -17.95076 -16.84544 -16.72486 -16.27531 -15.77891 -15.12284 -14.89464 -14.59929 -14.46252 -14.30981 -13.86154 -13.79146 -13.33543 -13.22992 -12.72904 -12.67036 -12.43759 -12.02471 -11.97233 -11.87160 -11.51353 -11.35270 -11.20515 -11.01579 -10.91315 -10.76834 -10.09036 -9.89458 -9.70731 -9.44181 -9.39629 -9.22687 -8.55977 -7.12876 -6.06726 -4.05360 0.42069 1.80842 2.26730 3.30779 3.33815 3.38572 3.42550 3.56138 4.08885 4.32540 4.33089 4.41552 4.44006 4.52017 4.80608 4.86253 5.07720 5.14785 5.18293 5.24197 5.27515 5.40452 5.45159 5.52290 5.61109 5.66204 5.72100 5.77732 5.83353 6.01364 6.07519 6.49373 6.50228 6.58794 6.78371 7.13675 7.23587 7.37198 7.37431 7.71922 7.76356 8.05971 8.50190 8.97252 9.55635 11.06587 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.002908 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.730709 B = 9626.353499 C =10282.382900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.100 3.900 5 N -0.456 5.456 6 C -0.020 4.020 7 C 0.287 3.713 8 N -0.728 5.728 9 C 0.134 3.866 10 C -0.113 4.113 11 C -0.010 4.010 12 C -0.522 4.522 13 H 0.071 0.929 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 N -0.421 5.421 21 C 0.071 3.929 22 C 0.453 3.547 23 O -0.555 6.555 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.162 0.838 34 H 0.406 0.594 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.461 19.173 -6.535 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.130 4.130 3 C -0.201 4.201 4 C -0.022 4.022 5 N -0.171 5.171 6 C -0.156 4.156 7 C 0.067 3.933 8 N -0.365 5.365 9 C 0.011 3.989 10 C -0.151 4.151 11 C -0.048 4.048 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.188 1.188 20 N -0.139 5.139 21 C -0.117 4.117 22 C 0.251 3.749 23 O -0.435 6.435 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.179 0.821 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 16.571 18.313 -6.732 25.599 hybrid contribution 0.163 0.172 -0.050 0.242 sum 16.734 18.485 -6.782 25.841 Atomic orbital electron populations 1.21956 0.94515 1.02336 1.02295 1.21452 0.96622 0.96797 0.98124 1.21756 1.01376 0.94660 1.02339 1.22104 1.02863 0.77759 0.99450 1.45318 1.15891 1.10222 1.45711 1.21643 0.90768 0.96101 1.07067 1.17325 0.90075 0.87214 0.98684 1.44490 1.16806 1.10109 1.65074 1.21454 0.97081 0.79697 1.00699 1.21685 0.93260 1.00463 0.99725 1.19488 0.97107 0.91141 0.97064 1.21109 1.01843 0.95253 1.37764 0.91077 1.25035 0.94751 0.98988 0.94759 1.69912 1.16424 1.23457 1.44479 0.86769 0.79722 0.82577 0.80199 1.20257 1.21405 1.18848 1.67231 1.03481 1.37808 1.05339 1.24611 0.93499 0.93695 0.99881 1.18389 0.85991 0.87969 0.82587 1.90964 1.22365 1.81063 1.49124 0.92253 0.92310 0.92149 0.90308 0.92193 0.91983 0.92312 0.89023 0.88125 0.82106 0.75800 0.92536 0.92526 0.92322 0.92297 0.96355 0.96788 0.92710 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.69 37.16 0.32 -0.71 16 2 C -0.11 -0.79 3.13 -90.62 -0.28 -1.08 16 3 C -0.14 -0.78 9.19 37.16 0.34 -0.44 16 4 C 0.10 0.76 4.92 -4.04 -0.02 0.74 16 5 N -0.46 -4.61 2.49 -119.12 -0.30 -4.91 16 6 C -0.02 -0.20 8.16 -16.37 -0.13 -0.33 16 7 C 0.29 3.53 7.42 -154.43 -1.15 2.39 16 8 N -0.73 -9.19 5.73 -60.72 -0.35 -9.54 16 9 C 0.13 2.09 5.71 -4.04 -0.02 2.07 16 10 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 11 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 12 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 13 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 14 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 16 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 20 N -0.42 -5.68 9.64 -12.10 -0.12 -5.80 16 21 C 0.07 0.86 11.22 -16.75 -0.19 0.67 16 22 C 0.45 5.71 7.45 -15.06 -0.11 5.60 16 23 O -0.55 -8.39 16.78 4.86 0.08 -8.31 16 24 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.49 8.05 -51.93 -0.42 0.07 16 32 H 0.10 0.85 7.47 -51.93 -0.39 0.47 16 33 H 0.16 1.08 7.97 -52.49 -0.42 0.66 16 34 H 0.41 4.23 8.46 -40.82 -0.35 3.89 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 40 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -33.03 345.97 -8.19 -41.21 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.90 Total: -1.12 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.92 Total: -6.76 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.01 Total: -47.15 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.03 -8.19 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.388 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds