Wall clock time and date at job start Tue Mar 31 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53003 * 109.46923 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.37097 * 119.99803 * 269.99829 * 5 4 3 7 7 H 1.08000 * 120.00224 * 142.46770 * 6 5 4 8 8 C 1.38955 * 120.00260 * 322.46202 * 6 5 4 9 9 N 1.31414 * 119.99923 * 340.09869 * 8 6 5 10 10 Si 1.86799 * 120.00337 * 160.09141 * 8 6 5 11 11 H 1.48500 * 109.46965 * 90.00139 * 10 8 6 12 12 H 1.48495 * 109.47215 * 210.00490 * 10 8 6 13 13 H 1.48498 * 109.46901 * 330.00576 * 10 8 6 14 14 C 1.34777 * 120.00235 * 90.00033 * 5 4 3 15 15 O 1.21291 * 119.99883 * 5.43764 * 14 5 4 16 16 C 1.50703 * 120.00061 * 185.43503 * 14 5 4 17 17 C 1.50696 * 109.46817 * 185.24414 * 16 14 5 18 18 C 1.39873 * 125.89993 * 125.03125 * 17 16 14 19 19 C 1.35313 * 107.91840 * 179.97438 * 18 17 16 20 20 C 1.50700 * 126.12433 * 179.97438 * 19 18 17 21 21 N 1.34940 * 107.75087 * 359.97438 * 19 18 17 22 22 C 1.46499 * 126.04150 * 180.02562 * 21 19 18 23 23 N 1.30845 * 125.90020 * 305.02029 * 17 16 14 24 24 H 1.09003 * 109.47338 * 59.99687 * 1 2 3 25 25 H 1.09004 * 109.47666 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46954 * 299.99941 * 1 2 3 27 27 H 1.09000 * 109.46954 * 240.00059 * 2 1 3 28 28 H 1.08997 * 109.47133 * 120.00723 * 2 1 3 29 29 H 1.09000 * 109.47110 * 60.00154 * 3 2 1 30 30 H 1.08998 * 109.47095 * 299.99645 * 3 2 1 31 31 H 1.09000 * 109.47224 * 60.00074 * 4 3 2 32 32 H 1.09003 * 109.47363 * 300.00148 * 4 3 2 33 33 H 0.96994 * 120.00447 * 185.16822 * 9 8 6 34 34 H 1.09000 * 109.46556 * 65.24369 * 16 14 5 35 35 H 1.09002 * 109.46827 * 305.24023 * 16 14 5 36 36 H 1.07999 * 126.03698 * 359.97438 * 18 17 16 37 37 H 1.09005 * 109.47252 * 270.00145 * 20 19 18 38 38 H 1.08999 * 109.47451 * 29.99735 * 20 19 18 39 39 H 1.08997 * 109.47292 * 150.00063 * 20 19 18 40 40 H 1.09001 * 109.47397 * 270.00809 * 22 21 19 41 41 H 1.09005 * 109.47025 * 30.00345 * 22 21 19 42 42 H 1.08995 * 109.47467 * 150.00164 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2864 3.4706 -1.1871 7 1 4.0533 4.5207 -1.2832 8 6 4.8175 2.7752 -2.2665 9 7 5.4572 1.6443 -2.0691 10 14 4.6222 3.4477 -3.9982 11 1 5.7727 4.3301 -4.3192 12 1 4.5776 2.3211 -4.9646 13 1 3.3610 4.2266 -4.0874 14 6 4.2835 3.4583 1.1674 15 8 4.1770 2.8566 2.2152 16 6 4.6676 4.9155 1.1710 17 6 4.9858 5.3476 2.5792 18 6 6.1747 5.9500 3.0035 19 6 6.0717 6.1841 4.3322 20 6 7.1217 6.8202 5.2063 21 7 4.8605 5.7460 4.7345 22 6 4.3323 5.8050 6.0996 23 7 4.1975 5.2242 3.6162 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 0.9287 -0.8909 32 1 3.9337 0.9284 0.8891 33 1 5.8924 1.1972 -2.8117 34 1 3.8391 5.5105 0.7868 35 1 5.5438 5.0618 0.5394 36 1 7.0247 6.1864 2.3805 37 1 7.7746 6.0469 5.6113 38 1 7.7115 7.5204 4.6147 39 1 6.6386 7.3533 6.0251 40 1 4.6011 4.8932 6.6330 41 1 4.7559 6.6664 6.6162 42 1 3.2469 5.8995 6.0656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177890568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:41 Heat of formation + Delta-G solvation = 28.476218 kcal Electronic energy + Delta-G solvation = -21983.133809 eV Core-core repulsion = 18771.731561 eV Total energy + Delta-G solvation = -3211.402248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80933 -38.36921 -35.30137 -33.82499 -33.49175 -31.70567 -31.39529 -29.75766 -27.95500 -26.69819 -25.31884 -24.77310 -22.62314 -20.44315 -19.95003 -19.41107 -18.61003 -16.52950 -16.24905 -15.76342 -15.25468 -14.69031 -14.53332 -14.13714 -14.05255 -13.85628 -13.33011 -13.14758 -13.00009 -12.64687 -12.47040 -12.25673 -12.14549 -11.92785 -11.88292 -11.69561 -11.32019 -11.21426 -11.09727 -10.73018 -10.51214 -10.41077 -10.25657 -10.15164 -9.91830 -9.62500 -9.04232 -8.61669 -8.26053 -8.00188 -7.34302 -6.29049 -3.98601 2.29442 2.90382 3.14473 3.24520 3.27891 3.30989 4.03637 4.19017 4.75989 4.80173 4.93562 5.08544 5.13670 5.24324 5.42005 5.49995 5.52252 5.55034 5.59498 5.72982 5.77982 5.96837 6.11731 6.15626 6.30239 6.31326 6.38773 6.44157 6.47303 6.54738 6.64203 6.71786 6.83360 6.92824 7.15779 7.26665 7.43359 7.44322 7.61344 8.07913 8.30984 8.47335 9.16543 9.65034 10.09268 10.72774 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.005072 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.573172 B = 5519.594824 C = 6934.033864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.115 3.885 5 N -0.444 5.444 6 C -0.340 4.340 7 H 0.088 0.912 8 C 0.045 3.955 9 N -0.862 5.862 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.478 3.522 15 O -0.589 6.589 16 C -0.045 4.045 17 C 0.102 3.898 18 C -0.266 4.266 19 C 0.064 3.936 20 C -0.085 4.085 21 N -0.384 5.384 22 C 0.106 3.894 23 N -0.262 5.262 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 6.926 8.264 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.009 4.009 5 N -0.163 5.163 6 C -0.468 4.468 7 H 0.106 0.894 8 C -0.161 4.161 9 N -0.499 5.499 10 Si 0.739 3.261 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.266 3.734 15 O -0.473 6.473 16 C -0.087 4.087 17 C -0.066 4.066 18 C -0.295 4.295 19 C -0.062 4.062 20 C -0.144 4.144 21 N -0.167 5.167 22 C -0.036 4.036 23 N -0.082 5.082 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.735 6.034 9.227 11.161 hybrid contribution 0.791 0.530 -1.256 1.576 sum -0.944 6.565 7.971 10.369 Atomic orbital electron populations 1.21757 0.96725 1.00587 1.01453 1.21427 0.94887 0.97891 1.01534 1.21903 0.98132 0.95291 1.01208 1.21388 0.90916 0.85175 1.03427 1.43370 1.56544 1.12094 1.04299 1.19393 1.43192 0.95948 0.88229 0.89431 1.25359 0.94624 0.96008 1.00093 1.69844 1.30007 1.17567 1.32450 0.86169 0.79034 0.78561 0.82366 1.20270 1.20834 1.19346 1.20134 0.80355 0.88668 0.84264 1.90560 1.56586 1.68153 1.32043 1.19889 1.03730 0.95847 0.89228 1.21922 0.92658 0.96925 0.95088 1.21109 1.01031 1.13381 0.93988 1.20934 0.88859 1.01225 0.95229 1.20364 0.95697 1.00208 0.98111 1.48479 1.12076 1.47974 1.08206 1.21678 1.01091 1.02293 0.78516 1.77532 1.20349 1.18559 0.91796 0.93039 0.93494 0.93136 0.92263 0.92505 0.93179 0.92296 0.87755 0.92985 0.92056 0.88910 0.87565 0.83878 0.90644 0.89972 0.91697 0.91276 0.90225 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.15 0.37 -1.84 16 2 C -0.12 -2.12 5.93 -26.74 -0.16 -2.27 16 3 C -0.13 -2.70 5.54 -26.73 -0.15 -2.85 16 4 C 0.11 2.84 5.04 -4.04 -0.02 2.82 16 5 N -0.44 -11.49 2.52 -114.81 -0.29 -11.78 16 6 C -0.34 -8.61 8.53 -14.93 -0.13 -8.74 16 7 H 0.09 2.09 7.23 -52.49 -0.38 1.71 16 8 C 0.04 1.13 5.00 -17.46 -0.09 1.04 16 9 N -0.86 -22.93 11.36 55.50 0.63 -22.30 16 10 Si 0.91 19.35 29.60 -169.99 -5.03 14.32 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.48 12.31 7.61 -10.98 -0.08 12.23 16 15 O -0.59 -16.76 15.05 5.55 0.08 -16.68 16 16 C -0.05 -0.98 4.90 -29.04 -0.14 -1.12 16 17 C 0.10 2.14 6.07 -82.40 -0.50 1.64 16 18 C -0.27 -4.73 10.64 -40.01 -0.43 -5.16 16 19 C 0.06 0.99 6.93 -82.27 -0.57 0.42 16 20 C -0.09 -0.85 10.12 36.01 0.36 -0.48 16 21 N -0.38 -6.54 4.01 -63.89 -0.26 -6.80 16 22 C 0.11 1.22 11.27 59.85 0.67 1.90 16 23 N -0.26 -5.65 11.82 33.67 0.40 -5.26 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.10 2.72 5.46 -51.93 -0.28 2.44 16 32 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 33 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 34 H 0.09 1.85 8.03 -51.93 -0.42 1.44 16 35 H 0.11 2.17 7.84 -51.93 -0.41 1.76 16 36 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.51 7.08 -51.93 -0.37 0.14 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.63 7.05 -51.93 -0.37 0.27 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -33.17 349.15 -6.87 -40.04 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.81 Total: 5.60 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.86 Total: -2.41 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.48 Total: -46.14 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.08 Total: -16.68 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.17 -6.87 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177890568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.521 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds