Wall clock time and date at job start Tue Mar 31 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53003 * 109.46923 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.37097 * 119.99803 * 269.99829 * 5 4 3 7 7 H 1.08000 * 120.00224 * 142.46770 * 6 5 4 8 8 C 1.38955 * 120.00260 * 322.46202 * 6 5 4 9 9 N 1.31414 * 119.99923 * 340.09869 * 8 6 5 10 10 Si 1.86799 * 120.00337 * 160.09141 * 8 6 5 11 11 H 1.48500 * 109.46965 * 90.00139 * 10 8 6 12 12 H 1.48495 * 109.47215 * 210.00490 * 10 8 6 13 13 H 1.48498 * 109.46901 * 330.00576 * 10 8 6 14 14 C 1.34777 * 120.00235 * 90.00033 * 5 4 3 15 15 O 1.21291 * 119.99883 * 5.43764 * 14 5 4 16 16 C 1.50703 * 120.00061 * 185.43503 * 14 5 4 17 17 C 1.50696 * 109.46817 * 185.24414 * 16 14 5 18 18 C 1.39873 * 125.89993 * 125.03125 * 17 16 14 19 19 C 1.35313 * 107.91840 * 179.97438 * 18 17 16 20 20 C 1.50700 * 126.12433 * 179.97438 * 19 18 17 21 21 N 1.34940 * 107.75087 * 359.97438 * 19 18 17 22 22 C 1.46499 * 126.04150 * 180.02562 * 21 19 18 23 23 N 1.30845 * 125.90020 * 305.02029 * 17 16 14 24 24 H 1.09003 * 109.47338 * 59.99687 * 1 2 3 25 25 H 1.09004 * 109.47666 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46954 * 299.99941 * 1 2 3 27 27 H 1.09000 * 109.46954 * 240.00059 * 2 1 3 28 28 H 1.08997 * 109.47133 * 120.00723 * 2 1 3 29 29 H 1.09000 * 109.47110 * 60.00154 * 3 2 1 30 30 H 1.08998 * 109.47095 * 299.99645 * 3 2 1 31 31 H 1.09000 * 109.47224 * 60.00074 * 4 3 2 32 32 H 1.09003 * 109.47363 * 300.00148 * 4 3 2 33 33 H 0.96994 * 120.00447 * 185.16822 * 9 8 6 34 34 H 1.09000 * 109.46556 * 65.24369 * 16 14 5 35 35 H 1.09002 * 109.46827 * 305.24023 * 16 14 5 36 36 H 1.07999 * 126.03698 * 359.97438 * 18 17 16 37 37 H 1.09005 * 109.47252 * 270.00145 * 20 19 18 38 38 H 1.08999 * 109.47451 * 29.99735 * 20 19 18 39 39 H 1.08997 * 109.47292 * 150.00063 * 20 19 18 40 40 H 1.09001 * 109.47397 * 270.00809 * 22 21 19 41 41 H 1.09005 * 109.47025 * 30.00345 * 22 21 19 42 42 H 1.08995 * 109.47467 * 150.00164 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2864 3.4706 -1.1871 7 1 4.0533 4.5207 -1.2832 8 6 4.8175 2.7752 -2.2665 9 7 5.4572 1.6443 -2.0691 10 14 4.6222 3.4477 -3.9982 11 1 5.7727 4.3301 -4.3192 12 1 4.5776 2.3211 -4.9646 13 1 3.3610 4.2266 -4.0874 14 6 4.2835 3.4583 1.1674 15 8 4.1770 2.8566 2.2152 16 6 4.6676 4.9155 1.1710 17 6 4.9858 5.3476 2.5792 18 6 6.1747 5.9500 3.0035 19 6 6.0717 6.1841 4.3322 20 6 7.1217 6.8202 5.2063 21 7 4.8605 5.7460 4.7345 22 6 4.3323 5.8050 6.0996 23 7 4.1975 5.2242 3.6162 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9329 0.9287 -0.8909 32 1 3.9337 0.9284 0.8891 33 1 5.8924 1.1972 -2.8117 34 1 3.8391 5.5105 0.7868 35 1 5.5438 5.0618 0.5394 36 1 7.0247 6.1864 2.3805 37 1 7.7746 6.0469 5.6113 38 1 7.7115 7.5204 4.6147 39 1 6.6386 7.3533 6.0251 40 1 4.6011 4.8932 6.6330 41 1 4.7559 6.6664 6.6162 42 1 3.2469 5.8995 6.0656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177890568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:41 Heat of formation + Delta-G solvation = 8.383290 kcal Electronic energy + Delta-G solvation = -21984.005103 eV Core-core repulsion = 18771.731561 eV Total energy + Delta-G solvation = -3212.273542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14883 -40.33663 -37.16916 -35.54641 -34.84681 -33.38002 -32.78744 -31.32349 -29.54084 -27.80419 -26.85330 -26.46114 -24.28340 -22.03309 -21.39136 -21.08258 -20.24319 -18.36907 -17.84734 -17.35680 -16.55000 -16.49685 -16.19412 -15.89736 -15.79401 -14.95945 -14.73386 -14.56191 -14.20919 -13.92599 -13.82330 -13.69379 -13.51904 -13.30998 -13.13883 -13.07973 -12.94424 -12.83184 -12.67168 -12.50975 -12.14491 -12.01358 -11.96391 -11.81403 -11.43389 -11.33795 -10.98856 -10.33951 -9.90734 -9.37189 -9.33667 -8.24409 -6.01450 1.01709 1.45369 1.52162 1.63411 1.75620 1.84349 2.09436 2.36747 3.01783 3.16554 3.65384 3.82808 4.05952 4.12567 4.16223 4.29255 4.33653 4.39285 4.47316 4.55762 4.62903 4.66417 4.68079 4.79792 4.82696 4.87738 4.91501 4.97546 4.98976 5.07681 5.10457 5.16690 5.34780 5.36048 5.42964 5.48915 5.60432 5.75680 6.10133 6.31008 6.48362 6.91287 7.17456 7.64574 8.09798 8.78837 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.005072 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.573172 B = 5519.594824 C = 6934.033864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.116 3.884 5 N -0.453 5.453 6 C -0.357 4.357 7 H 0.100 0.900 8 C 0.005 3.995 9 N -0.897 5.897 10 Si 0.985 3.015 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.462 3.538 15 O -0.626 6.626 16 C -0.034 4.034 17 C 0.074 3.926 18 C -0.296 4.296 19 C 0.080 3.920 20 C -0.082 4.082 21 N -0.386 5.386 22 C 0.094 3.906 23 N -0.317 5.317 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.272 0.728 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 8.466 8.475 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.008 4.008 5 N -0.171 5.171 6 C -0.484 4.484 7 H 0.118 0.882 8 C -0.198 4.198 9 N -0.534 5.534 10 Si 0.808 3.192 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.185 1.185 14 C 0.252 3.748 15 O -0.513 6.513 16 C -0.076 4.076 17 C -0.092 4.092 18 C -0.325 4.325 19 C -0.048 4.048 20 C -0.140 4.140 21 N -0.169 5.169 22 C -0.046 4.046 23 N -0.139 5.139 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.177 0.823 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.584 7.583 9.440 12.211 hybrid contribution 0.791 0.033 -1.197 1.435 sum -0.792 7.615 8.243 11.250 Atomic orbital electron populations 1.21706 0.94013 1.02396 1.01782 1.21408 0.97221 0.95114 1.01627 1.21758 0.95471 0.97746 1.00183 1.21353 0.93199 0.84890 1.01335 1.43668 1.56298 1.12330 1.04840 1.19783 1.43698 0.96726 0.88209 0.88201 1.26238 0.93660 0.96096 1.03810 1.69965 1.30749 1.18939 1.33759 0.85059 0.79383 0.77861 0.76878 1.19359 1.20909 1.18452 1.20878 0.79890 0.90374 0.83685 1.90511 1.58201 1.69383 1.33197 1.19754 1.04099 0.92949 0.90750 1.21964 0.94303 0.98274 0.94665 1.21418 1.00765 1.14641 0.95640 1.21766 0.88964 0.98894 0.95183 1.20577 0.94411 1.00756 0.98233 1.48880 1.12490 1.46764 1.08785 1.22119 1.01518 1.04675 0.76294 1.77378 1.22417 1.20683 0.93447 0.92410 0.90951 0.93138 0.91882 0.92741 0.94778 0.92451 0.88982 0.95603 0.91811 0.88014 0.86922 0.82301 0.89363 0.88139 0.88819 0.90560 0.85752 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.12 -4.10 5.93 30.59 0.18 -3.92 16 3 C -0.11 -4.96 5.54 30.59 0.17 -4.79 16 4 C 0.12 6.02 5.04 86.38 0.44 6.46 16 5 N -0.45 -24.36 2.52 -635.52 -1.60 -25.96 16 6 C -0.36 -18.36 8.53 84.04 0.72 -17.64 16 7 H 0.10 4.78 7.23 -2.91 -0.02 4.76 16 8 C 0.00 0.24 5.00 84.93 0.42 0.66 16 9 N -0.90 -48.51 11.36 21.66 0.25 -48.27 16 10 Si 0.98 39.30 29.60 68.60 2.03 41.33 16 11 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 12 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 14 C 0.46 24.93 7.61 87.66 0.67 25.60 16 15 O -0.63 -37.56 15.05 -3.06 -0.05 -37.61 16 16 C -0.03 -1.53 4.90 29.10 0.14 -1.39 16 17 C 0.07 3.20 6.07 43.10 0.26 3.47 16 18 C -0.30 -10.45 10.64 21.99 0.23 -10.22 16 19 C 0.08 2.34 6.93 41.41 0.29 2.62 16 20 C -0.08 -1.30 10.12 71.24 0.72 -0.58 16 21 N -0.39 -12.80 4.01 -356.04 -1.43 -14.22 16 22 C 0.09 1.97 11.27 127.77 1.44 3.42 16 23 N -0.32 -14.05 11.82 -47.38 -0.56 -14.61 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.09 5.01 5.46 -2.39 -0.01 5.00 16 32 H 0.03 1.43 7.35 -2.39 -0.02 1.41 16 33 H 0.27 13.81 8.32 -92.71 -0.77 13.04 16 34 H 0.10 4.22 8.03 -2.39 -0.02 4.20 16 35 H 0.11 4.74 7.84 -2.39 -0.02 4.73 16 36 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 39 H 0.09 0.99 7.08 -2.39 -0.02 0.97 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.12 1.47 7.05 -2.38 -0.02 1.45 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.58 349.15 6.02 -69.56 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.99 Total: 29.41 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.39 Total: 0.37 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -3.34 Total: -103.06 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.05 Total: -37.61 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -75.58 6.02 -69.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177890568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.943 kcal (2) G-P(sol) polarization free energy of solvation -75.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds