Wall clock time and date at job start Tue Mar 31 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47387 * 2 1 4 4 C 1.53008 * 109.47288 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47270 * 180.02562 * 4 3 2 6 6 C 1.36916 * 119.99948 * 270.00267 * 5 4 3 7 7 H 1.07995 * 120.00383 * 141.72050 * 6 5 4 8 8 C 1.39024 * 119.99426 * 321.71763 * 6 5 4 9 9 N 1.31384 * 119.99556 * 161.09122 * 8 6 5 10 10 Si 1.86795 * 120.00249 * 341.09070 * 8 6 5 11 11 H 1.48494 * 109.47500 * 92.81211 * 10 8 6 12 12 H 1.48499 * 109.46970 * 212.81455 * 10 8 6 13 13 H 1.48502 * 109.47338 * 332.81132 * 10 8 6 14 14 C 1.34778 * 120.00568 * 89.99794 * 5 4 3 15 15 O 1.21606 * 119.99322 * 355.29950 * 14 5 4 16 16 C 1.47607 * 120.00469 * 175.30176 * 14 5 4 17 17 C 1.41539 * 126.52294 * 173.82439 * 16 14 5 18 18 C 1.35350 * 105.50239 * 179.97438 * 17 16 14 19 19 N 1.35057 * 107.23982 * 0.26334 * 18 17 16 20 20 C 1.46501 * 124.87709 * 179.70296 * 19 18 17 21 21 C 1.52997 * 109.46817 * 123.02091 * 20 19 18 22 22 C 1.53008 * 109.46910 * 184.90466 * 21 20 19 23 23 N 1.28465 * 110.23946 * 359.54744 * 19 18 17 24 24 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47066 * 300.00192 * 1 2 3 26 26 H 1.08999 * 109.47199 * 60.00146 * 1 2 3 27 27 H 1.08999 * 109.47066 * 239.99808 * 2 1 3 28 28 H 1.09000 * 109.47021 * 120.00373 * 2 1 3 29 29 H 1.08999 * 109.47174 * 59.99874 * 3 2 1 30 30 H 1.09000 * 109.47345 * 300.00175 * 3 2 1 31 31 H 1.08999 * 109.47143 * 59.99821 * 4 3 2 32 32 H 1.08996 * 109.46755 * 299.99656 * 4 3 2 33 33 H 0.97004 * 119.99956 * 185.01648 * 9 8 6 34 34 H 1.07997 * 127.25311 * 359.94293 * 17 16 14 35 35 H 1.08005 * 126.38131 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.46834 * 243.01718 * 20 19 18 37 37 H 1.08996 * 109.47204 * 3.02046 * 20 19 18 38 38 H 1.09001 * 109.47704 * 304.90619 * 21 20 19 39 39 H 1.09004 * 109.47295 * 64.90693 * 21 20 19 40 40 H 1.09002 * 109.46959 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.46995 * 299.99851 * 22 21 20 42 42 H 1.08995 * 109.46926 * 60.00645 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2861 3.4697 -1.1855 7 1 4.0418 4.5169 -1.2853 8 6 4.8319 2.7775 -2.2606 9 7 4.7136 3.2565 -3.4783 10 14 5.7333 1.1668 -1.9739 11 1 4.7841 0.0348 -2.1240 12 1 6.8289 1.0292 -2.9669 13 1 6.3038 1.1559 -0.6029 14 6 4.2836 3.4583 1.1674 15 8 4.0010 2.9161 2.2186 16 6 4.8732 4.8115 1.1701 17 6 5.0549 5.6489 2.2966 18 6 5.6261 6.7792 1.8188 19 7 5.7688 6.6225 0.4849 20 6 6.3433 7.6219 -0.4192 21 6 7.5284 7.0099 -1.1687 22 6 8.2038 8.0865 -2.0208 23 7 5.3313 5.4700 0.1235 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9337 0.9285 0.8891 33 1 5.0297 2.7394 -4.2357 34 1 4.7925 5.4321 3.3215 35 1 5.9108 7.6465 2.3960 36 1 5.5864 7.9416 -1.1354 37 1 6.6833 8.4815 0.1583 38 1 8.2457 6.6115 -0.4512 39 1 7.1744 6.2054 -1.8134 40 1 9.0484 7.6506 -2.5545 41 1 7.4865 8.4848 -2.7384 42 1 8.5579 8.8909 -1.3762 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189820545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:13 Heat of formation + Delta-G solvation = 44.539561 kcal Electronic energy + Delta-G solvation = -22475.694957 eV Core-core repulsion = 19264.989268 eV Total energy + Delta-G solvation = -3210.705689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84505 -38.54207 -35.50740 -35.01493 -33.93396 -31.75355 -31.18023 -30.03480 -28.57787 -26.35936 -24.75615 -23.74041 -22.09439 -20.97302 -20.62074 -20.53810 -18.71132 -17.54943 -16.21396 -15.99584 -15.51662 -15.12307 -14.76820 -14.59974 -14.04377 -13.81170 -13.29505 -13.23399 -12.98096 -12.79598 -12.62097 -12.35892 -12.18338 -12.05641 -11.76286 -11.67355 -11.32246 -11.21401 -11.07220 -10.71768 -10.61630 -10.52969 -10.36013 -10.08309 -9.66618 -9.52898 -9.11144 -8.64593 -8.46194 -8.31858 -7.67050 -6.30730 -3.88015 2.55713 2.83168 3.08162 3.13556 3.27995 3.35662 4.19727 4.44473 4.47838 4.72365 4.95772 5.09826 5.19344 5.25654 5.40514 5.43115 5.48490 5.52133 5.58991 5.66511 5.75729 5.87546 6.01976 6.11594 6.17520 6.18486 6.23059 6.28374 6.30387 6.38970 6.41618 6.46369 6.52230 6.57143 6.86577 6.99925 7.18318 7.44922 7.47510 8.20071 8.54966 8.76713 9.13293 9.48589 9.77809 10.77648 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.006199 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.841914 B = 4515.793314 C = 5592.413592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.449 5.449 6 C -0.311 4.311 7 H 0.121 0.879 8 C 0.067 3.933 9 N -0.864 5.864 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.291 1.291 13 H -0.264 1.264 14 C 0.549 3.451 15 O -0.597 6.597 16 C 0.007 3.993 17 C -0.194 4.194 18 C -0.043 4.043 19 N -0.301 5.301 20 C 0.128 3.872 21 C -0.140 4.140 22 C -0.147 4.147 23 N -0.208 5.208 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.272 0.728 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 5.890 3.691 7.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.021 4.021 5 N -0.167 5.167 6 C -0.440 4.440 7 H 0.138 0.862 8 C -0.139 4.139 9 N -0.501 5.501 10 Si 0.702 3.298 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.189 1.189 14 C 0.339 3.661 15 O -0.481 6.481 16 C -0.153 4.153 17 C -0.223 4.223 18 C -0.185 4.185 19 N -0.090 5.090 20 C 0.008 3.992 21 C -0.178 4.178 22 C -0.204 4.204 23 N -0.041 5.041 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.161 5.652 2.759 6.650 hybrid contribution 0.497 -0.645 0.743 1.102 sum 2.657 5.007 3.502 6.663 Atomic orbital electron populations 1.21737 0.96190 1.00807 1.01769 1.21481 0.95573 0.97524 1.01562 1.21833 0.95806 0.95944 1.02756 1.21693 0.94296 0.84965 1.01103 1.43692 1.55509 1.11687 1.05854 1.19378 1.40081 0.98237 0.86262 0.86192 1.25316 0.95720 0.97831 0.95055 1.69648 1.44215 1.38275 0.97972 0.87031 0.80092 0.83700 0.78951 1.20124 1.21784 1.18852 1.17164 0.81282 0.84087 0.83616 1.90618 1.57997 1.67691 1.31837 1.21978 1.06403 0.97065 0.89891 1.21670 1.06903 0.93794 0.99932 1.22667 1.08481 1.01726 0.85608 1.45982 1.44196 1.12824 1.05966 1.21879 0.96512 0.88298 0.92553 1.21826 0.96236 0.99890 0.99835 1.21687 1.00757 0.98271 0.99734 1.74476 1.11827 0.92656 1.25182 0.93338 0.92898 0.92776 0.92323 0.92281 0.91811 0.91132 0.91667 0.91368 0.91753 0.83168 0.81528 0.89304 0.89027 0.91659 0.89184 0.92129 0.92241 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.04 5.93 -26.74 -0.16 -2.20 16 3 C -0.12 -2.53 5.54 -26.73 -0.15 -2.67 16 4 C 0.10 2.37 4.15 -4.04 -0.02 2.35 16 5 N -0.45 -11.54 2.17 -115.97 -0.25 -11.79 16 6 C -0.31 -8.44 8.26 -14.99 -0.12 -8.56 16 7 H 0.12 3.49 6.44 -52.49 -0.34 3.15 16 8 C 0.07 1.81 5.36 -17.45 -0.09 1.72 16 9 N -0.86 -24.13 13.95 55.50 0.77 -23.36 16 10 Si 0.87 21.28 24.94 -169.99 -4.24 17.04 16 11 H -0.27 -6.32 6.61 56.52 0.37 -5.94 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.55 14.18 7.63 -12.44 -0.09 14.08 16 15 O -0.60 -15.97 16.56 5.27 0.09 -15.88 16 16 C 0.01 0.17 6.82 -82.77 -0.56 -0.40 16 17 C -0.19 -3.75 10.81 -39.35 -0.43 -4.18 16 18 C -0.04 -0.69 11.40 -17.16 -0.20 -0.88 16 19 N -0.30 -5.32 3.39 -61.33 -0.21 -5.53 16 20 C 0.13 1.68 6.39 -4.04 -0.03 1.66 16 21 C -0.14 -1.90 6.05 -26.73 -0.16 -2.06 16 22 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 23 N -0.21 -4.67 8.72 33.41 0.29 -4.38 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.07 1.53 3.02 -51.93 -0.16 1.38 16 32 H 0.07 1.56 7.49 -51.93 -0.39 1.17 16 33 H 0.27 7.13 8.32 -40.82 -0.34 6.79 16 34 H 0.15 2.66 8.06 -52.49 -0.42 2.24 16 35 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -31.96 343.98 -6.44 -38.40 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.81 Total: 4.29 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.27 Total: -3.97 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.61 Total: -45.06 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.09 Total: -15.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.24 Total: 17.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.96 -6.44 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189820545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.940 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds