Wall clock time and date at job start Tue Mar 31 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 C 1.52996 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47043 * 180.02562 * 4 3 2 6 6 C 1.36909 * 120.00116 * 263.46652 * 5 4 3 7 7 H 1.07990 * 120.00359 * 137.59184 * 6 5 4 8 8 C 1.39024 * 119.99839 * 317.58927 * 6 5 4 9 9 N 1.31387 * 119.99963 * 347.23854 * 8 6 5 10 10 Si 1.86790 * 119.99888 * 167.23236 * 8 6 5 11 11 H 1.48494 * 109.47303 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46908 * 120.00347 * 10 8 6 13 13 H 1.48505 * 109.47575 * 240.00118 * 10 8 6 14 14 C 1.34776 * 119.99899 * 83.46100 * 5 4 3 15 15 O 1.21608 * 119.99755 * 5.80818 * 14 5 4 16 16 C 1.47603 * 119.99968 * 185.80192 * 14 5 4 17 17 C 1.41542 * 126.52353 * 174.52422 * 16 14 5 18 18 C 1.35351 * 105.50306 * 179.97438 * 17 16 14 19 19 C 1.50700 * 126.37898 * 179.97438 * 18 17 16 20 20 N 1.35048 * 107.24101 * 0.02562 * 18 17 16 21 21 C 1.46498 * 124.87718 * 180.26780 * 20 18 17 22 22 C 1.53009 * 109.46849 * 269.71244 * 21 20 18 23 23 N 1.28467 * 110.23978 * 359.97438 * 20 18 17 24 24 H 1.09008 * 109.46543 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46657 * 299.99248 * 1 2 3 26 26 H 1.08997 * 109.47592 * 59.99858 * 1 2 3 27 27 H 1.09008 * 109.47107 * 240.00649 * 2 1 3 28 28 H 1.08997 * 109.47592 * 120.00142 * 2 1 3 29 29 H 1.09000 * 109.46790 * 60.00031 * 3 2 1 30 30 H 1.08997 * 109.47002 * 300.00503 * 3 2 1 31 31 H 1.09000 * 109.47564 * 60.00110 * 4 3 2 32 32 H 1.08997 * 109.47249 * 299.99957 * 4 3 2 33 33 H 0.96999 * 120.00034 * 179.97438 * 9 8 6 34 34 H 1.07998 * 127.25269 * 359.96623 * 17 16 14 35 35 H 1.09002 * 109.47433 * 270.00517 * 19 18 17 36 36 H 1.08998 * 109.47030 * 30.00403 * 19 18 17 37 37 H 1.09002 * 109.46955 * 149.99990 * 19 18 17 38 38 H 1.08996 * 109.47450 * 29.71471 * 21 20 18 39 39 H 1.08999 * 109.47500 * 149.72019 * 21 20 18 40 40 H 1.08996 * 109.47280 * 300.00332 * 22 21 20 41 41 H 1.09003 * 109.46499 * 60.00646 * 22 21 20 42 42 H 1.08997 * 109.46691 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8239 0.0000 6 6 4.4131 3.4250 -1.1778 7 1 4.1247 4.4477 -1.3704 8 6 5.1449 2.7188 -2.1258 9 7 5.7094 1.5772 -1.8030 10 14 5.3253 3.3931 -3.8584 11 1 4.6008 4.6849 -3.9648 12 1 6.7638 3.6065 -4.1592 13 1 4.7552 2.4240 -4.8286 14 6 4.1580 3.5028 1.1600 15 8 3.9444 2.9378 2.2154 16 6 4.5267 4.9320 1.1492 17 6 4.5658 5.8003 2.2663 18 6 4.9551 7.0011 1.7777 19 6 5.1495 8.2680 2.5702 20 7 5.1357 6.8525 0.4477 21 6 5.5651 7.9164 -0.4634 22 6 4.3364 8.6435 -1.0135 23 7 4.8826 5.6428 0.0971 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 6.2196 1.0843 -2.4645 34 1 4.3336 5.5563 3.2924 35 1 4.2136 8.8260 2.5989 36 1 5.4546 8.0178 3.5863 37 1 5.9212 8.8766 2.0988 38 1 6.1951 8.6240 0.0756 39 1 6.1299 7.4823 -1.2884 40 1 3.7064 7.9359 -1.5524 41 1 3.7716 9.0777 -0.1885 42 1 4.6559 9.4347 -1.6917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190115508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:17 Heat of formation + Delta-G solvation = 14.962559 kcal Electronic energy + Delta-G solvation = -22544.953166 eV Core-core repulsion = 19332.964922 eV Total energy + Delta-G solvation = -3211.988244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.40852 -40.24592 -37.12916 -35.66518 -35.29109 -33.55031 -33.23371 -30.99885 -29.83179 -27.69816 -26.86571 -25.77944 -24.15050 -22.81027 -21.93743 -21.45716 -20.47785 -18.80104 -17.68182 -17.21284 -16.83030 -16.46663 -16.20716 -16.03059 -15.53714 -15.44794 -14.70916 -14.43105 -14.31124 -13.92527 -13.82803 -13.78895 -13.60042 -13.28297 -13.16197 -13.02589 -12.97754 -12.83414 -12.62890 -12.17108 -12.14183 -12.07018 -11.96692 -11.85047 -11.44609 -11.23189 -10.96932 -10.55977 -9.87378 -9.67570 -9.34273 -8.23872 -6.01625 0.90586 1.29939 1.42491 1.44917 1.57138 1.80644 2.32645 2.68545 2.96840 3.16506 3.66141 3.89254 4.05517 4.09631 4.12167 4.19521 4.27000 4.31230 4.41152 4.51297 4.68985 4.80999 4.82454 4.82999 4.84345 4.86189 4.93831 5.00062 5.07385 5.11903 5.16916 5.19362 5.24961 5.36219 5.41902 5.50358 5.54588 5.71888 6.08439 6.18560 6.58841 7.09063 7.29014 7.62083 8.00794 8.80725 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.006678 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.128092 B = 4192.157501 C = 5466.494981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.122 3.878 5 N -0.435 5.435 6 C -0.323 4.323 7 H 0.108 0.892 8 C -0.005 4.005 9 N -0.906 5.906 10 Si 0.985 3.015 11 H -0.258 1.258 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.527 3.473 15 O -0.634 6.634 16 C -0.024 4.024 17 C -0.225 4.225 18 C 0.016 3.984 19 C -0.073 4.073 20 N -0.292 5.292 21 C 0.103 3.897 22 C -0.161 4.161 23 N -0.253 5.253 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.269 0.731 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 13.669 0.164 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.001 4.001 5 N -0.152 5.152 6 C -0.451 4.451 7 H 0.125 0.875 8 C -0.206 4.206 9 N -0.545 5.545 10 Si 0.809 3.191 11 H -0.182 1.182 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.317 3.683 15 O -0.521 6.521 16 C -0.183 4.183 17 C -0.253 4.253 18 C -0.108 4.108 19 C -0.131 4.131 20 N -0.082 5.082 21 C -0.015 4.015 22 C -0.219 4.219 23 N -0.088 5.088 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.552 13.258 -0.697 13.519 hybrid contribution 0.256 -0.448 0.170 0.543 sum -2.296 12.810 -0.527 13.025 Atomic orbital electron populations 1.21708 0.93967 1.02454 1.01770 1.21403 0.97229 0.94731 1.01869 1.21798 0.95112 0.98193 1.00293 1.21378 0.93215 0.84016 1.01530 1.43625 1.53888 1.12107 1.05537 1.20113 1.32490 0.99710 0.92832 0.87520 1.26328 0.93943 0.96343 1.03986 1.70016 1.32082 1.16531 1.35824 0.84996 0.77867 0.78903 0.77358 1.18153 1.20678 1.20012 1.17864 0.80908 0.85746 0.83827 1.90535 1.58974 1.70428 1.32197 1.21881 1.09403 0.95089 0.91924 1.21614 1.11605 0.92535 0.99581 1.21939 1.04862 0.98885 0.85142 1.20474 1.04060 0.89650 0.98944 1.46362 1.46981 1.07794 1.07026 1.22329 0.99121 0.86694 0.93396 1.22121 0.96765 1.00712 1.02289 1.74181 1.16981 0.91932 1.25694 0.90844 0.93040 0.92541 0.91792 0.92378 0.94411 0.92672 0.89045 0.95211 0.92160 0.83092 0.88884 0.89058 0.88765 0.84599 0.88920 0.94360 0.91131 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.11 -4.03 5.93 30.59 0.18 -3.85 16 3 C -0.12 -5.13 5.49 30.59 0.17 -4.96 16 4 C 0.12 6.49 4.87 86.38 0.42 6.91 16 5 N -0.44 -24.95 2.50 -639.06 -1.60 -26.55 16 6 C -0.32 -18.05 8.00 84.09 0.67 -17.38 16 7 H 0.11 5.94 5.83 -2.92 -0.02 5.92 16 8 C -0.01 -0.28 5.07 84.95 0.43 0.16 16 9 N -0.91 -51.72 11.39 21.68 0.25 -51.47 16 10 Si 0.99 42.40 29.57 68.60 2.03 44.43 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 14 C 0.53 30.57 7.58 86.72 0.66 31.23 16 15 O -0.63 -38.83 16.59 -4.06 -0.07 -38.89 16 16 C -0.02 -1.23 6.87 42.43 0.29 -0.94 16 17 C -0.22 -9.29 10.73 22.42 0.24 -9.05 16 18 C 0.02 0.52 6.92 41.40 0.29 0.80 16 19 C -0.07 -1.27 10.10 71.24 0.72 -0.55 16 20 N -0.29 -9.96 3.30 -334.59 -1.10 -11.06 16 21 C 0.10 2.26 6.80 86.38 0.59 2.85 16 22 C -0.16 -2.96 10.24 71.99 0.74 -2.23 16 23 N -0.25 -11.67 8.74 -48.20 -0.42 -12.09 16 24 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 5.07 5.68 -2.39 -0.01 5.06 16 32 H 0.03 1.67 7.55 -2.39 -0.02 1.65 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.58 16 34 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.09 6.99 -2.39 -0.02 1.08 16 38 H 0.14 1.78 6.94 -2.39 -0.02 1.76 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -77.75 347.11 6.18 -71.57 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.99 Total: 24.33 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.11 Total: -0.26 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -2.88 Total: -101.18 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.07 Total: -38.89 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -77.75 6.18 -71.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190115508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.535 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds