Wall clock time and date at job start Tue Mar 31 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47517 * 2 1 4 4 C 1.52993 * 109.47492 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.46899 * 110.99596 * 66.04929 * 5 4 3 7 7 C 1.50698 * 109.46836 * 193.95420 * 6 5 4 8 8 H 1.08001 * 120.00364 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99678 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00425 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46926 * 59.99994 * 11 9 7 13 13 H 1.48501 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47087 * 300.00395 * 11 9 7 15 15 C 1.46894 * 111.00038 * 190.00024 * 5 4 3 16 16 C 1.50703 * 109.47222 * 170.00136 * 15 5 4 17 17 C 1.38592 * 120.73720 * 89.99635 * 16 15 5 18 18 N 1.32299 * 119.17228 * 179.72620 * 17 16 15 19 19 C 1.32316 * 120.76174 * 0.26202 * 18 17 16 20 20 O 1.35464 * 119.19757 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99909 * 179.97438 * 20 19 18 22 22 N 1.32319 * 121.60905 * 359.97438 * 19 18 17 23 23 C 1.32298 * 120.75820 * 0.02562 * 22 19 18 24 24 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.00131 * 1 2 3 26 26 H 1.09001 * 109.46470 * 60.00207 * 1 2 3 27 27 H 1.09005 * 109.47351 * 239.99426 * 2 1 3 28 28 H 1.09005 * 109.46930 * 119.99968 * 2 1 3 29 29 H 1.09005 * 109.46563 * 59.99597 * 3 2 1 30 30 H 1.08995 * 109.46974 * 300.00133 * 3 2 1 31 31 H 1.09005 * 109.47026 * 59.99641 * 4 3 2 32 32 H 1.09005 * 109.47280 * 300.00167 * 4 3 2 33 33 H 1.09000 * 109.47501 * 313.95147 * 6 5 4 34 34 H 1.09003 * 109.47745 * 73.95491 * 6 5 4 35 35 H 0.96996 * 120.00215 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47287 * 50.00259 * 15 5 4 37 37 H 1.08998 * 109.47626 * 290.00212 * 15 5 4 38 38 H 1.08002 * 120.41674 * 0.02562 * 17 16 15 39 39 H 1.08998 * 109.46622 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.46741 * 299.99786 * 21 20 19 41 41 H 1.08999 * 109.47281 * 60.00096 * 21 20 19 42 42 H 1.08005 * 120.41219 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.9135 4.9942 1.0900 8 1 4.2671 5.3909 0.1497 9 6 3.6474 5.8461 2.1410 10 7 3.2163 5.3632 3.2859 11 14 3.9005 7.6858 1.9394 12 1 3.0338 8.1875 0.8428 13 1 3.5454 8.3760 3.2055 14 1 5.3227 7.9566 1.6094 15 6 5.5086 2.8733 -0.2375 16 6 5.9337 4.2995 -0.4755 17 6 6.3206 5.1089 0.5808 18 7 6.6932 6.3545 0.3359 19 6 6.6941 6.8303 -0.8987 20 8 7.0812 8.1106 -1.1133 21 6 7.0648 8.5756 -2.4644 22 7 6.3263 6.0860 -1.9291 23 6 5.9422 4.8320 -1.7550 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9338 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 2.6660 3.3110 1.4958 34 1 4.3466 3.1420 2.0574 35 1 3.0288 5.9624 4.0252 36 1 5.7527 2.2707 -1.1124 37 1 6.0324 2.4786 0.6331 38 1 6.3226 4.7263 1.5908 39 1 7.3957 9.6136 -2.4954 40 1 7.7341 7.9623 -3.0678 41 1 6.0518 8.5056 -2.8606 42 1 5.6435 4.2294 -2.6000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206400778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:18 Heat of formation + Delta-G solvation = 21.441256 kcal Electronic energy + Delta-G solvation = -22607.916286 eV Core-core repulsion = 19396.208980 eV Total energy + Delta-G solvation = -3211.707306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56538 -38.13058 -37.01340 -34.50061 -33.10868 -32.54038 -31.36053 -28.46697 -27.78919 -26.86585 -24.64855 -23.64356 -23.03076 -22.00362 -20.70523 -19.84924 -18.17813 -17.23662 -16.80217 -15.78137 -15.24915 -14.88807 -14.59338 -14.43962 -14.25943 -13.99102 -13.57186 -13.29573 -13.14366 -12.70457 -12.52360 -12.41380 -12.05859 -11.87899 -11.65709 -11.16135 -11.07634 -11.01093 -10.83363 -10.70184 -10.60130 -10.57361 -10.24864 -10.08373 -9.88899 -9.55461 -9.36039 -8.58587 -8.28096 -7.78391 -7.38109 -6.20605 -4.14707 1.82752 1.97764 3.20236 3.39088 3.41078 3.62238 4.38581 4.50284 4.78755 4.90074 5.19639 5.22538 5.33230 5.40306 5.41332 5.48036 5.50316 5.52802 5.63214 5.66537 5.73228 5.80582 5.93340 5.98754 6.02663 6.11945 6.14923 6.21642 6.31331 6.36636 6.64722 6.67167 6.77506 6.98156 7.13579 7.19388 7.51036 7.64443 7.88783 7.97199 8.05168 8.39358 8.84860 8.91303 9.42324 10.86303 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.005987 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.151190 B = 4675.598010 C = 5721.561523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.059 3.941 5 N -0.537 5.537 6 C 0.186 3.814 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.070 3.930 10 N -0.879 5.879 11 Si 0.861 3.139 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.228 1.228 15 C 0.122 3.878 16 C -0.202 4.202 17 C 0.262 3.738 18 N -0.542 5.542 19 C 0.485 3.515 20 O -0.300 6.300 21 C 0.050 3.950 22 N -0.595 5.595 23 C 0.171 3.829 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.037 0.963 34 H -0.007 1.007 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.167 0.833 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -5.841 -8.280 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.069 4.069 5 N -0.261 5.261 6 C 0.061 3.939 7 C -0.539 4.539 8 H 0.088 0.912 9 C -0.136 4.136 10 N -0.516 5.516 11 Si 0.687 3.313 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.151 1.151 15 C -0.007 4.007 16 C -0.207 4.207 17 C 0.098 3.902 18 N -0.268 5.268 19 C 0.182 3.818 20 O -0.202 6.202 21 C -0.047 4.047 22 N -0.326 5.326 23 C 0.011 3.989 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.184 0.816 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.235 -4.343 -8.521 10.097 hybrid contribution -0.271 -0.183 0.649 0.726 sum 2.964 -4.526 -7.873 9.553 Atomic orbital electron populations 1.21755 0.96209 1.00877 1.01965 1.21493 0.95607 0.97551 1.01303 1.21618 0.95094 0.95441 1.03237 1.21996 0.95421 0.90357 0.99121 1.62203 1.11055 1.13158 1.39712 1.19862 0.96816 0.93381 0.83817 1.21513 1.42628 0.91356 0.98427 0.91235 1.24955 0.94375 0.99108 0.95117 1.69947 1.43028 1.35794 1.02863 0.87044 0.82142 0.84899 0.77251 1.20862 1.21474 1.15122 1.20536 0.89402 0.91302 0.99454 1.20974 1.05105 0.99442 0.95216 1.22620 0.82698 0.85860 0.99060 1.67707 1.23668 1.15580 1.19849 1.20614 0.89734 0.85330 0.86165 1.86025 1.81231 1.22716 1.30242 1.22801 1.02471 0.98841 0.80557 1.67869 1.21606 1.08422 1.34726 1.22335 0.91207 0.89187 0.96142 0.93335 0.92681 0.92858 0.92546 0.92476 0.91184 0.91570 0.92291 0.95964 0.94465 0.98894 0.92497 0.91555 0.94767 0.81560 0.88872 0.92465 0.92395 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.52 5.93 -26.73 -0.16 -1.68 16 3 C -0.12 -1.81 5.17 -26.74 -0.14 -1.95 16 4 C 0.06 0.96 4.96 -3.83 -0.02 0.94 16 5 N -0.54 -10.38 4.56 -237.52 -1.08 -11.47 16 6 C 0.19 4.39 4.54 -4.98 -0.02 4.37 16 7 C -0.50 -12.92 5.39 -34.44 -0.19 -13.10 16 8 H 0.07 1.85 4.79 -52.49 -0.25 1.60 16 9 C 0.07 1.90 5.44 -17.82 -0.10 1.80 16 10 N -0.88 -24.77 13.29 55.43 0.74 -24.04 16 11 Si 0.86 21.82 28.86 -169.99 -4.91 16.92 16 12 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.23 -5.83 6.03 56.52 0.34 -5.49 16 15 C 0.12 2.10 5.15 -4.98 -0.03 2.07 16 16 C -0.20 -3.83 3.49 -104.36 -0.36 -4.20 16 17 C 0.26 5.52 7.08 -17.22 -0.12 5.39 16 18 N -0.54 -12.22 8.76 -14.73 -0.13 -12.35 16 19 C 0.48 10.35 8.49 -91.25 -0.77 9.58 16 20 O -0.30 -5.92 10.56 -18.08 -0.19 -6.11 16 21 C 0.05 0.71 10.36 101.05 1.05 1.75 16 22 N -0.60 -11.71 9.23 -14.73 -0.14 -11.85 16 23 C 0.17 3.12 10.79 -17.22 -0.19 2.94 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.27 6.31 -51.93 -0.33 0.94 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 32 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.04 0.95 5.98 -51.93 -0.31 0.64 16 34 H -0.01 -0.17 7.99 -51.93 -0.41 -0.58 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 37 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 38 H 0.17 3.56 7.69 -52.49 -0.40 3.15 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.16 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -29.98 336.41 -8.10 -38.08 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.78 Total: -0.79 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -0.68 Total: 6.54 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.61 Total: -59.70 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.19 Total: -6.11 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.91 Total: 16.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.98 -8.10 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206400778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.519 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds