Wall clock time and date at job start Tue Mar 31 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47517 * 2 1 4 4 C 1.52993 * 109.47492 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47363 * 179.97438 * 4 3 2 6 6 C 1.46899 * 110.99596 * 66.04929 * 5 4 3 7 7 C 1.50698 * 109.46836 * 193.95420 * 6 5 4 8 8 H 1.08001 * 120.00364 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99678 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00425 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46926 * 59.99994 * 11 9 7 13 13 H 1.48501 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47087 * 300.00395 * 11 9 7 15 15 C 1.46894 * 111.00038 * 190.00024 * 5 4 3 16 16 C 1.50703 * 109.47222 * 170.00136 * 15 5 4 17 17 C 1.38592 * 120.73720 * 89.99635 * 16 15 5 18 18 N 1.32299 * 119.17228 * 179.72620 * 17 16 15 19 19 C 1.32316 * 120.76174 * 0.26202 * 18 17 16 20 20 O 1.35464 * 119.19757 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99909 * 179.97438 * 20 19 18 22 22 N 1.32319 * 121.60905 * 359.97438 * 19 18 17 23 23 C 1.32298 * 120.75820 * 0.02562 * 22 19 18 24 24 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47212 * 300.00131 * 1 2 3 26 26 H 1.09001 * 109.46470 * 60.00207 * 1 2 3 27 27 H 1.09005 * 109.47351 * 239.99426 * 2 1 3 28 28 H 1.09005 * 109.46930 * 119.99968 * 2 1 3 29 29 H 1.09005 * 109.46563 * 59.99597 * 3 2 1 30 30 H 1.08995 * 109.46974 * 300.00133 * 3 2 1 31 31 H 1.09005 * 109.47026 * 59.99641 * 4 3 2 32 32 H 1.09005 * 109.47280 * 300.00167 * 4 3 2 33 33 H 1.09000 * 109.47501 * 313.95147 * 6 5 4 34 34 H 1.09003 * 109.47745 * 73.95491 * 6 5 4 35 35 H 0.96996 * 120.00215 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47287 * 50.00259 * 15 5 4 37 37 H 1.08998 * 109.47626 * 290.00212 * 15 5 4 38 38 H 1.08002 * 120.41674 * 0.02562 * 17 16 15 39 39 H 1.08998 * 109.46622 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.46741 * 299.99786 * 21 20 19 41 41 H 1.08999 * 109.47281 * 60.00096 * 21 20 19 42 42 H 1.08005 * 120.41219 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.9135 4.9942 1.0900 8 1 4.2671 5.3909 0.1497 9 6 3.6474 5.8461 2.1410 10 7 3.2163 5.3632 3.2859 11 14 3.9005 7.6858 1.9394 12 1 3.0338 8.1875 0.8428 13 1 3.5454 8.3760 3.2055 14 1 5.3227 7.9566 1.6094 15 6 5.5086 2.8733 -0.2375 16 6 5.9337 4.2995 -0.4755 17 6 6.3206 5.1089 0.5808 18 7 6.6932 6.3545 0.3359 19 6 6.6941 6.8303 -0.8987 20 8 7.0812 8.1106 -1.1133 21 6 7.0648 8.5756 -2.4644 22 7 6.3263 6.0860 -1.9291 23 6 5.9422 4.8320 -1.7550 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9338 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 2.6660 3.3110 1.4958 34 1 4.3466 3.1420 2.0574 35 1 3.0288 5.9624 4.0252 36 1 5.7527 2.2707 -1.1124 37 1 6.0324 2.4786 0.6331 38 1 6.3226 4.7263 1.5908 39 1 7.3957 9.6136 -2.4954 40 1 7.7341 7.9623 -3.0678 41 1 6.0518 8.5056 -2.8606 42 1 5.6435 4.2294 -2.6000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206400778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:17 Heat of formation + Delta-G solvation = -0.351477 kcal Electronic energy + Delta-G solvation = -22608.861290 eV Core-core repulsion = 19396.208980 eV Total energy + Delta-G solvation = -3212.652310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13009 -39.60191 -38.46851 -35.76518 -34.82909 -34.35761 -32.78584 -29.95927 -29.32238 -28.20353 -26.11917 -25.18809 -24.75310 -23.36449 -21.95057 -21.31882 -19.65284 -18.86844 -18.66938 -17.27400 -16.81165 -16.27203 -16.13517 -16.05329 -15.75216 -15.40225 -15.06980 -14.69933 -14.36136 -14.23619 -14.00329 -13.89853 -13.71409 -13.28360 -13.02535 -12.83418 -12.57213 -12.52833 -12.35862 -12.17499 -12.11497 -11.87013 -11.65435 -11.55592 -11.31517 -11.25559 -11.17927 -10.62076 -9.90094 -9.38527 -8.95269 -8.28127 -6.24393 0.25919 0.41295 1.30715 1.33160 1.55488 1.81183 2.35185 2.90490 3.14102 3.32236 3.48886 3.96957 4.02100 4.07338 4.15785 4.19239 4.27299 4.38592 4.41380 4.44880 4.56059 4.67940 4.73003 4.77520 4.84896 4.91135 5.01710 5.07382 5.16031 5.18442 5.27972 5.33899 5.35651 5.45635 5.50403 5.57915 5.64012 5.97403 6.06789 6.36088 6.39704 6.68888 6.84150 7.32553 7.36677 8.79916 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.005987 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.151190 B = 4675.598010 C = 5721.561523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.060 3.940 5 N -0.543 5.543 6 C 0.204 3.796 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.034 3.966 10 N -0.913 5.913 11 Si 0.901 3.099 12 H -0.294 1.294 13 H -0.290 1.290 14 H -0.233 1.233 15 C 0.122 3.878 16 C -0.201 4.201 17 C 0.250 3.750 18 N -0.569 5.569 19 C 0.469 3.531 20 O -0.320 6.320 21 C 0.044 3.956 22 N -0.587 5.587 23 C 0.178 3.822 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.013 0.987 34 H -0.029 1.029 35 H 0.263 0.737 36 H 0.110 0.890 37 H 0.036 0.964 38 H 0.153 0.847 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -7.233 -10.997 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.150 4.150 4 C -0.068 4.068 5 N -0.267 5.267 6 C 0.078 3.922 7 C -0.531 4.531 8 H 0.082 0.918 9 C -0.167 4.167 10 N -0.553 5.553 11 Si 0.727 3.273 12 H -0.221 1.221 13 H -0.216 1.216 14 H -0.156 1.156 15 C -0.006 4.006 16 C -0.207 4.207 17 C 0.086 3.914 18 N -0.296 5.296 19 C 0.166 3.834 20 O -0.223 6.223 21 C -0.051 4.051 22 N -0.318 5.318 23 C 0.017 3.983 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.031 0.969 34 H -0.011 1.011 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.170 0.830 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.830 -5.726 -11.251 13.192 hybrid contribution -0.339 0.252 1.314 1.380 sum 3.491 -5.474 -9.937 11.870 Atomic orbital electron populations 1.21761 0.95684 1.02014 1.01395 1.21446 0.96071 0.95316 1.02414 1.21567 0.95036 0.97266 1.01130 1.22121 0.95491 0.88538 1.00650 1.62116 1.12689 1.15128 1.36809 1.19469 0.94852 0.92631 0.85266 1.21629 1.41457 0.92451 0.97557 0.91785 1.25356 0.95113 1.00889 0.95381 1.70008 1.45671 1.36156 1.03451 0.86456 0.81254 0.83098 0.76451 1.22065 1.21570 1.15600 1.20687 0.87883 0.90667 1.01409 1.21186 1.04315 1.00193 0.94956 1.22584 0.83454 0.86022 0.99371 1.67597 1.24312 1.16460 1.21236 1.20832 0.90240 0.86208 0.86120 1.86009 1.81013 1.21992 1.33286 1.23154 1.02725 1.00855 0.78382 1.67987 1.20913 1.08894 1.33976 1.23029 0.89391 0.88860 0.96999 0.91324 0.94070 0.92693 0.90354 0.92311 0.94747 0.92190 0.88747 0.96116 0.96945 1.01125 0.92823 0.87216 0.94630 0.82994 0.85414 0.91338 0.92764 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.11 -2.59 5.93 30.59 0.18 -2.41 16 3 C -0.11 -3.37 5.17 30.59 0.16 -3.21 16 4 C 0.06 1.77 4.96 86.30 0.43 2.20 16 5 N -0.54 -20.05 4.56 -905.38 -4.13 -24.18 16 6 C 0.20 9.75 4.54 85.56 0.39 10.14 16 7 C -0.49 -25.73 5.39 25.60 0.14 -25.59 16 8 H 0.06 3.39 4.79 -2.91 -0.01 3.37 16 9 C 0.03 1.88 5.44 84.66 0.46 2.34 16 10 N -0.91 -53.22 13.29 21.45 0.28 -52.93 16 11 Si 0.90 46.11 28.86 68.60 1.98 48.09 16 12 H -0.29 -15.41 7.11 99.48 0.71 -14.71 16 13 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 14 H -0.23 -11.99 6.03 99.48 0.60 -11.39 16 15 C 0.12 3.83 5.15 85.56 0.44 4.27 16 16 C -0.20 -7.24 3.49 -19.69 -0.07 -7.31 16 17 C 0.25 10.51 7.08 84.71 0.60 11.11 16 18 N -0.57 -25.67 8.76 -313.47 -2.75 -28.42 16 19 C 0.47 19.56 8.49 180.57 1.53 21.09 16 20 O -0.32 -12.30 10.56 -87.63 -0.92 -13.23 16 21 C 0.04 1.15 10.36 113.37 1.17 2.33 16 22 N -0.59 -21.72 9.23 -313.47 -2.89 -24.62 16 23 C 0.18 5.92 10.79 84.71 0.91 6.83 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.03 1.27 6.31 -2.38 -0.02 1.25 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 2.19 7.93 -2.38 -0.02 2.17 16 32 H 0.02 0.63 8.12 -2.38 -0.02 0.61 16 33 H 0.01 0.66 5.98 -2.39 -0.01 0.65 16 34 H -0.03 -1.49 7.99 -2.39 -0.02 -1.51 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.11 2.55 7.89 -2.38 -0.02 2.53 16 37 H 0.04 1.13 7.97 -2.39 -0.02 1.11 16 38 H 0.15 6.72 7.69 -2.91 -0.02 6.70 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 41 H 0.05 1.46 8.09 -2.39 -0.02 1.44 16 42 H 0.20 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -66.54 336.41 -0.48 -67.03 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.88 Total: 8.99 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.06 Total: 19.27 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -9.48 Total: -130.15 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.92 Total: -13.23 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.98 Total: 48.09 kcal Total: -66.54 -0.48 -67.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206400778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.676 kcal (2) G-P(sol) polarization free energy of solvation -66.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds