Wall clock time and date at job start Tue Mar 31 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46780 * 2 1 4 4 C 1.53008 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46892 * 109.47156 * 179.52125 * 4 3 2 6 6 C 1.46898 * 111.00348 * 288.06736 * 5 4 3 7 7 C 1.50696 * 109.47367 * 160.36165 * 6 5 4 8 8 H 1.08004 * 120.00246 * 4.90194 * 7 6 5 9 9 C 1.37878 * 120.00177 * 184.89632 * 7 6 5 10 10 N 1.31514 * 119.99842 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99846 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47160 * 89.99859 * 11 9 7 13 13 H 1.48501 * 109.47245 * 209.99697 * 11 9 7 14 14 H 1.48500 * 109.47498 * 329.99762 * 11 9 7 15 15 C 1.46904 * 110.99689 * 164.11061 * 5 4 3 16 16 C 1.50697 * 109.47242 * 293.95075 * 15 5 4 17 17 C 1.38237 * 119.92204 * 95.02320 * 16 15 5 18 18 N 1.32217 * 120.07872 * 180.02562 * 17 16 15 19 19 C 1.32529 * 119.93021 * 359.97438 * 18 17 16 20 20 O 1.35682 * 120.06656 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00175 * 359.97438 * 20 19 18 22 22 C 1.39061 * 119.86272 * 359.97438 * 19 18 17 23 23 N 1.32006 * 119.91920 * 0.04202 * 22 19 18 24 24 H 1.09003 * 109.46506 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47066 * 300.00419 * 1 2 3 26 26 H 1.09001 * 109.46771 * 60.00412 * 1 2 3 27 27 H 1.08994 * 109.47066 * 239.99581 * 2 1 3 28 28 H 1.09001 * 109.46771 * 119.99588 * 2 1 3 29 29 H 1.08994 * 109.47663 * 59.99947 * 3 2 1 30 30 H 1.09001 * 109.47132 * 299.99367 * 3 2 1 31 31 H 1.09006 * 109.46795 * 59.52050 * 4 3 2 32 32 H 1.08996 * 109.46687 * 299.52432 * 4 3 2 33 33 H 1.09004 * 109.46952 * 280.36267 * 6 5 4 34 34 H 1.08999 * 109.46931 * 40.35889 * 6 5 4 35 35 H 0.97001 * 119.99486 * 179.97438 * 10 9 7 36 36 H 1.09005 * 109.46928 * 173.95911 * 15 5 4 37 37 H 1.09000 * 109.47137 * 53.96036 * 15 5 4 38 38 H 1.07993 * 119.96296 * 0.02562 * 17 16 15 39 39 H 1.09004 * 109.47537 * 300.00171 * 21 20 19 40 40 H 1.09000 * 109.47492 * 60.00214 * 21 20 19 41 41 H 1.09004 * 109.47239 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.04299 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0597 2.8274 -0.0109 6 6 3.8347 3.4545 -1.3202 7 6 3.8861 4.9535 -1.1747 8 1 4.1458 5.3953 -0.2240 9 6 3.6018 5.7612 -2.2554 10 7 3.6462 7.0695 -2.1282 11 14 3.1535 4.9973 -3.9000 12 1 1.6827 4.8053 -3.9721 13 1 3.5898 5.8960 -4.9987 14 1 3.8314 3.6831 -4.0367 15 6 5.4786 2.8873 0.3647 16 6 5.6361 2.4634 1.8022 17 6 5.9519 1.1518 2.1037 18 7 6.0903 0.7764 3.3639 19 6 5.9263 1.6593 4.3387 20 8 6.0672 1.2770 5.6329 21 6 6.3924 -0.0936 5.8727 22 6 5.6097 2.9782 4.0323 23 7 5.4726 3.3467 2.7721 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9212 -0.8848 32 1 3.9330 0.9363 0.8951 33 1 4.6085 3.1302 -2.0161 34 1 2.8569 3.1597 -1.7010 35 1 3.4465 7.6376 -2.8886 36 1 5.8435 3.9074 0.2447 37 1 6.0527 2.2183 -0.2765 38 1 6.0858 0.4329 1.3091 39 1 5.6083 -0.7303 5.4630 40 1 7.3415 -0.3313 5.3923 41 1 6.4752 -0.2650 6.9460 42 1 5.4758 3.7002 4.8243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231937654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:13 Heat of formation + Delta-G solvation = 9.182814 kcal Electronic energy + Delta-G solvation = -21887.418333 eV Core-core repulsion = 18675.179461 eV Total energy + Delta-G solvation = -3212.238872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23801 -38.62239 -37.26999 -34.51053 -33.91478 -32.56856 -31.36809 -29.04307 -28.34082 -27.00391 -25.09293 -24.50600 -22.89636 -22.15992 -20.93227 -19.81917 -18.48750 -17.90739 -16.83233 -16.28826 -16.00012 -15.44490 -14.83366 -14.77311 -14.56608 -14.16954 -14.07337 -13.85639 -13.33662 -12.93496 -12.69302 -12.40910 -12.23675 -12.14088 -11.72580 -11.58980 -11.47570 -11.35452 -11.14820 -10.95693 -10.88585 -10.64489 -10.52045 -10.39759 -10.03528 -9.85904 -9.28379 -9.04275 -8.55945 -8.50622 -7.42772 -6.00985 -3.97752 0.90594 1.24413 2.88123 3.29032 3.36994 3.37586 3.73975 4.08337 4.32777 4.43945 4.56373 4.71161 5.02321 5.07242 5.10149 5.14939 5.25702 5.30563 5.32610 5.36446 5.42615 5.52505 5.58247 5.76470 5.91532 5.96527 5.98738 6.04869 6.09052 6.14717 6.29649 6.42977 6.55717 6.70527 6.81269 6.87936 6.98107 7.30336 7.62417 7.85802 7.90960 8.00395 8.68598 9.12470 9.60453 11.12334 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.004925 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.135614 B = 5684.099820 C = 7011.245517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.049 3.951 5 N -0.517 5.517 6 C 0.164 3.836 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.115 3.885 16 C 0.067 3.933 17 C 0.088 3.912 18 N -0.498 5.498 19 C 0.255 3.745 20 O -0.303 6.303 21 C 0.039 3.961 22 C 0.048 3.952 23 N -0.377 5.377 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.058 0.942 33 H -0.010 1.010 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.043 0.957 38 H 0.167 0.833 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 -16.202 10.233 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.080 4.080 5 N -0.241 5.241 6 C 0.038 3.962 7 C -0.544 4.544 8 H 0.102 0.898 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.014 4.014 16 C -0.072 4.072 17 C -0.071 4.071 18 N -0.227 5.227 19 C 0.073 3.927 20 O -0.209 6.209 21 C -0.057 4.057 22 C -0.116 4.116 23 N -0.092 5.092 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.007 0.993 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.061 0.939 38 H 0.184 0.816 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.490 -15.623 10.721 19.110 hybrid contribution 0.191 -1.098 -1.558 1.916 sum 2.681 -16.721 9.163 19.254 Atomic orbital electron populations 1.21754 0.96061 1.00947 1.02024 1.21500 0.95748 0.97469 1.01301 1.21587 0.94941 0.95448 1.03265 1.22188 0.95862 0.90733 0.99218 1.61905 1.14686 1.14473 1.33073 1.20232 0.95493 0.96213 0.84257 1.21067 1.46365 0.88099 0.98886 0.89776 1.24885 0.95301 0.94690 0.98361 1.69898 1.49798 1.03041 1.31090 0.86941 0.79201 0.79506 0.84551 1.20214 1.21245 1.19357 1.20813 0.90715 1.03484 0.86424 1.22265 0.97101 0.90432 0.97423 1.23315 0.95604 0.95727 0.92413 1.68000 1.17353 1.36300 1.01042 1.20986 0.94864 0.91920 0.84974 1.86260 1.84599 1.29985 1.20054 1.22868 1.01091 0.79879 1.01822 1.23014 1.00829 0.92633 0.95110 1.68458 1.06700 1.35460 0.98555 0.93263 0.92764 0.92671 0.92434 0.92604 0.91410 0.91381 0.95626 0.92362 0.99258 0.95278 0.92738 0.87304 0.93949 0.81607 0.92353 0.92377 0.88562 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.71 16 3 C -0.11 -1.83 5.29 -26.73 -0.14 -1.97 16 4 C 0.05 0.80 4.81 -3.82 -0.02 0.78 16 5 N -0.52 -10.44 4.37 -237.52 -1.04 -11.48 16 6 C 0.16 3.83 3.65 -4.98 -0.02 3.81 16 7 C -0.51 -14.17 9.17 -34.44 -0.32 -14.48 16 8 H 0.08 2.62 7.90 -52.48 -0.41 2.20 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 11 Si 0.87 21.19 27.37 -169.99 -4.65 16.53 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.25 6.69 56.52 0.38 -5.87 16 15 C 0.11 2.08 5.13 -4.98 -0.03 2.06 16 16 C 0.07 1.11 5.69 -82.43 -0.47 0.64 16 17 C 0.09 1.23 9.17 -17.39 -0.16 1.08 16 18 N -0.50 -7.00 9.40 -13.13 -0.12 -7.12 16 19 C 0.25 3.56 7.49 -16.95 -0.13 3.43 16 20 O -0.30 -3.69 10.49 -18.75 -0.20 -3.89 16 21 C 0.04 0.35 10.40 101.05 1.05 1.40 16 22 C 0.05 0.70 11.18 -17.17 -0.19 0.51 16 23 N -0.38 -6.60 10.41 -9.16 -0.10 -6.70 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.20 6.52 -51.93 -0.34 0.86 16 31 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 32 H 0.06 0.88 5.56 -51.93 -0.29 0.60 16 33 H -0.01 -0.24 7.40 -51.93 -0.38 -0.62 16 34 H 0.03 0.68 5.40 -51.93 -0.28 0.40 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.11 2.27 7.32 -51.93 -0.38 1.89 16 37 H 0.04 0.67 8.03 -51.93 -0.42 0.25 16 38 H 0.17 1.87 8.00 -52.49 -0.42 1.45 16 39 H 0.06 0.53 8.11 -51.93 -0.42 0.10 16 40 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -31.65 343.94 -7.18 -38.83 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.72 Total: -0.68 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.30 Total: -3.97 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.48 Total: -52.01 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.65 -7.18 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231937654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.013 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds