Wall clock time and date at job start Tue Mar 31 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46780 * 2 1 4 4 C 1.53008 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46892 * 109.47156 * 179.52125 * 4 3 2 6 6 C 1.46898 * 111.00348 * 288.06736 * 5 4 3 7 7 C 1.50696 * 109.47367 * 160.36165 * 6 5 4 8 8 H 1.08004 * 120.00246 * 4.90194 * 7 6 5 9 9 C 1.37878 * 120.00177 * 184.89632 * 7 6 5 10 10 N 1.31514 * 119.99842 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99846 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47160 * 89.99859 * 11 9 7 13 13 H 1.48501 * 109.47245 * 209.99697 * 11 9 7 14 14 H 1.48500 * 109.47498 * 329.99762 * 11 9 7 15 15 C 1.46904 * 110.99689 * 164.11061 * 5 4 3 16 16 C 1.50697 * 109.47242 * 293.95075 * 15 5 4 17 17 C 1.38237 * 119.92204 * 95.02320 * 16 15 5 18 18 N 1.32217 * 120.07872 * 180.02562 * 17 16 15 19 19 C 1.32529 * 119.93021 * 359.97438 * 18 17 16 20 20 O 1.35682 * 120.06656 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00175 * 359.97438 * 20 19 18 22 22 C 1.39061 * 119.86272 * 359.97438 * 19 18 17 23 23 N 1.32006 * 119.91920 * 0.04202 * 22 19 18 24 24 H 1.09003 * 109.46506 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47066 * 300.00419 * 1 2 3 26 26 H 1.09001 * 109.46771 * 60.00412 * 1 2 3 27 27 H 1.08994 * 109.47066 * 239.99581 * 2 1 3 28 28 H 1.09001 * 109.46771 * 119.99588 * 2 1 3 29 29 H 1.08994 * 109.47663 * 59.99947 * 3 2 1 30 30 H 1.09001 * 109.47132 * 299.99367 * 3 2 1 31 31 H 1.09006 * 109.46795 * 59.52050 * 4 3 2 32 32 H 1.08996 * 109.46687 * 299.52432 * 4 3 2 33 33 H 1.09004 * 109.46952 * 280.36267 * 6 5 4 34 34 H 1.08999 * 109.46931 * 40.35889 * 6 5 4 35 35 H 0.97001 * 119.99486 * 179.97438 * 10 9 7 36 36 H 1.09005 * 109.46928 * 173.95911 * 15 5 4 37 37 H 1.09000 * 109.47137 * 53.96036 * 15 5 4 38 38 H 1.07993 * 119.96296 * 0.02562 * 17 16 15 39 39 H 1.09004 * 109.47537 * 300.00171 * 21 20 19 40 40 H 1.09000 * 109.47492 * 60.00214 * 21 20 19 41 41 H 1.09004 * 109.47239 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.04299 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0597 2.8274 -0.0109 6 6 3.8347 3.4545 -1.3202 7 6 3.8861 4.9535 -1.1747 8 1 4.1458 5.3953 -0.2240 9 6 3.6018 5.7612 -2.2554 10 7 3.6462 7.0695 -2.1282 11 14 3.1535 4.9973 -3.9000 12 1 1.6827 4.8053 -3.9721 13 1 3.5898 5.8960 -4.9987 14 1 3.8314 3.6831 -4.0367 15 6 5.4786 2.8873 0.3647 16 6 5.6361 2.4634 1.8022 17 6 5.9519 1.1518 2.1037 18 7 6.0903 0.7764 3.3639 19 6 5.9263 1.6593 4.3387 20 8 6.0672 1.2770 5.6329 21 6 6.3924 -0.0936 5.8727 22 6 5.6097 2.9782 4.0323 23 7 5.4726 3.3467 2.7721 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9212 -0.8848 32 1 3.9330 0.9363 0.8951 33 1 4.6085 3.1302 -2.0161 34 1 2.8569 3.1597 -1.7010 35 1 3.4465 7.6376 -2.8886 36 1 5.8435 3.9074 0.2447 37 1 6.0527 2.2183 -0.2765 38 1 6.0858 0.4329 1.3091 39 1 5.6083 -0.7303 5.4630 40 1 7.3415 -0.3313 5.3923 41 1 6.4752 -0.2650 6.9460 42 1 5.4758 3.7002 4.8243 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231937654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:12 Heat of formation + Delta-G solvation = -14.873816 kcal Electronic energy + Delta-G solvation = -21888.461507 eV Core-core repulsion = 18675.179461 eV Total energy + Delta-G solvation = -3213.282046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36793 -39.70736 -38.65296 -35.70665 -35.10388 -34.59178 -32.67467 -30.50253 -29.59342 -28.22882 -26.39027 -25.62788 -24.30169 -23.64669 -22.08942 -21.33837 -19.48934 -19.08933 -18.88719 -17.34452 -17.24769 -16.85913 -16.10594 -15.94228 -15.85610 -15.73556 -15.26035 -14.97487 -14.71820 -14.36499 -14.15901 -13.85023 -13.40571 -13.29199 -13.23107 -12.93723 -12.62478 -12.51081 -12.43994 -12.36772 -12.13343 -12.04416 -11.86859 -11.74095 -11.66803 -11.40531 -11.30022 -10.72015 -10.21169 -9.66033 -8.96653 -8.22493 -6.25016 -0.22172 0.08051 1.37343 1.38563 1.49108 1.91796 2.38034 2.55804 3.06429 3.08930 3.15051 3.31279 3.50439 3.89723 4.02491 4.08097 4.17214 4.31540 4.41776 4.42667 4.45064 4.48028 4.53595 4.62587 4.70611 4.75967 4.81004 4.90880 4.98327 5.02394 5.05498 5.11147 5.13089 5.28212 5.41553 5.49489 5.62631 5.98073 6.03770 6.18386 6.38042 6.68946 6.80362 6.82949 7.37663 8.94890 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.004925 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.135614 B = 5684.099820 C = 7011.245517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.052 3.948 5 N -0.540 5.540 6 C 0.176 3.824 7 C -0.510 4.510 8 H 0.032 0.968 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.945 3.055 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.245 1.245 15 C 0.120 3.880 16 C 0.048 3.952 17 C 0.104 3.896 18 N -0.497 5.497 19 C 0.262 3.738 20 O -0.306 6.306 21 C 0.032 3.968 22 C 0.038 3.962 23 N -0.418 5.418 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.075 0.925 33 H -0.004 1.004 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.199 0.801 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -19.926 10.047 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.151 4.151 4 C -0.076 4.076 5 N -0.265 5.265 6 C 0.049 3.951 7 C -0.548 4.548 8 H 0.051 0.949 9 C -0.190 4.190 10 N -0.593 5.593 11 Si 0.769 3.231 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.168 1.168 15 C -0.009 4.009 16 C -0.092 4.092 17 C -0.055 4.055 18 N -0.226 5.226 19 C 0.079 3.921 20 O -0.211 6.211 21 C -0.062 4.062 22 C -0.125 4.125 23 N -0.134 5.134 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.014 0.986 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.216 0.784 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.146 0.854 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.506 -19.384 10.568 22.220 hybrid contribution 0.239 0.069 -1.276 1.300 sum 2.745 -19.315 9.292 21.609 Atomic orbital electron populations 1.21761 0.95409 1.02155 1.01516 1.21445 0.96304 0.94994 1.02467 1.21577 0.94762 0.97523 1.01269 1.22253 0.95976 0.88612 1.00762 1.61725 1.16405 1.17125 1.31221 1.19940 0.95726 0.93163 0.86247 1.21287 1.45596 0.91079 0.96871 0.94940 1.25850 0.95214 0.95003 1.02975 1.70076 1.51620 1.04981 1.32598 0.85747 0.79353 0.79399 0.78631 1.19281 1.20994 1.16844 1.20664 0.89854 1.01843 0.88518 1.22043 0.99290 0.91620 0.96200 1.23615 0.93737 0.94923 0.93183 1.68128 1.17543 1.36013 1.00963 1.21050 0.93569 0.91680 0.85757 1.86270 1.84108 1.31995 1.18771 1.23177 1.01088 0.77995 1.03974 1.23259 1.00958 0.93750 0.94554 1.68336 1.07915 1.37114 0.99989 0.91166 0.93288 0.93271 0.91143 0.91432 0.93461 0.93355 0.93849 0.90664 0.98618 0.94831 0.92626 0.91495 0.91154 0.78434 0.92289 0.92158 0.85416 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.11 -2.59 5.93 30.60 0.18 -2.40 16 3 C -0.11 -3.49 5.29 30.60 0.16 -3.32 16 4 C 0.05 1.60 4.81 86.31 0.42 2.02 16 5 N -0.54 -21.85 4.37 -905.37 -3.96 -25.81 16 6 C 0.18 8.23 3.65 85.56 0.31 8.55 16 7 C -0.51 -29.79 9.17 25.60 0.23 -29.56 16 8 H 0.03 2.17 7.90 -2.91 -0.02 2.15 16 9 C 0.01 0.36 5.47 84.66 0.46 0.83 16 10 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 11 Si 0.95 43.85 27.37 68.60 1.88 45.73 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.25 -10.35 6.69 99.48 0.67 -9.68 16 15 C 0.12 4.40 5.13 85.56 0.44 4.84 16 16 C 0.05 1.56 5.69 42.50 0.24 1.80 16 17 C 0.10 2.68 9.17 84.63 0.78 3.45 16 18 N -0.50 -12.81 9.40 -308.18 -2.90 -15.70 16 19 C 0.26 6.92 7.49 84.79 0.64 7.55 16 20 O -0.31 -6.81 10.49 -90.01 -0.94 -7.75 16 21 C 0.03 0.48 10.40 113.37 1.18 1.66 16 22 C 0.04 1.12 11.18 84.86 0.95 2.07 16 23 N -0.42 -15.04 10.41 -182.90 -1.90 -16.94 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.66 6.52 -2.39 -0.02 1.64 16 31 H 0.04 1.22 8.05 -2.38 -0.02 1.20 16 32 H 0.08 2.08 5.56 -2.39 -0.01 2.07 16 33 H 0.00 -0.17 7.40 -2.38 -0.02 -0.19 16 34 H 0.03 1.55 5.40 -2.39 -0.01 1.54 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.07 2.98 7.32 -2.38 -0.02 2.96 16 37 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 38 H 0.20 3.69 8.00 -2.91 -0.02 3.67 16 39 H 0.06 0.90 8.11 -2.38 -0.02 0.88 16 40 H 0.06 0.89 8.11 -2.39 -0.02 0.88 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.19 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -72.02 343.94 0.12 -71.89 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.95 Total: 13.85 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 6.70 Total: -4.98 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -8.46 Total: -118.74 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.94 Total: -7.75 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -72.02 0.12 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231937654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.017 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds