Wall clock time and date at job start Tue Mar 31 2020 03:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 H 1.08998 * 109.46910 * 177.96392 * 3 2 1 5 5 C 1.50696 * 109.46794 * 57.96383 * 3 2 1 6 6 H 1.08003 * 119.99970 * 239.99955 * 5 3 2 7 7 C 1.37882 * 120.00486 * 60.00106 * 5 3 2 8 8 N 1.31516 * 119.99513 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00366 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46911 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46737 * 119.99500 * 9 7 5 12 12 H 1.48493 * 109.47066 * 240.00037 * 9 7 5 13 13 N 1.46899 * 109.47397 * 297.96249 * 3 2 1 14 14 C 1.46895 * 110.99953 * 273.75094 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.90272 * 14 13 3 16 16 C 1.38619 * 120.41407 * 94.99725 * 15 14 13 17 17 C 1.38566 * 118.51967 * 179.97438 * 16 15 14 18 18 N 1.32309 * 119.17993 * 0.02562 * 17 16 15 19 19 C 1.32300 * 120.75896 * 0.02562 * 18 17 16 20 20 O 1.35464 * 119.19680 * 180.02562 * 19 18 17 21 21 C 1.42897 * 116.99925 * 359.97438 * 20 19 18 22 22 C 1.52998 * 109.46959 * 89.99660 * 21 20 19 23 23 C 1.52993 * 109.47142 * 210.00157 * 21 20 19 24 24 N 1.32284 * 120.41302 * 274.71536 * 15 14 13 25 25 H 1.09006 * 109.47337 * 54.44577 * 1 2 3 26 26 H 1.09000 * 109.47171 * 294.44879 * 1 2 3 27 27 H 1.09000 * 109.47410 * 174.44611 * 1 2 3 28 28 H 1.09003 * 109.47002 * 120.00293 * 2 1 3 29 29 H 1.09003 * 109.46808 * 239.99908 * 2 1 3 30 30 H 0.96992 * 119.99750 * 180.02562 * 8 7 5 31 31 H 1.00894 * 111.00070 * 149.79209 * 13 3 2 32 32 H 1.09002 * 109.47243 * 294.90044 * 14 13 3 33 33 H 1.09001 * 109.47481 * 54.90013 * 14 13 3 34 34 H 1.08004 * 120.73827 * 0.02562 * 16 15 14 35 35 H 1.08009 * 120.40979 * 179.97438 * 17 16 15 36 36 H 1.09008 * 109.47156 * 330.00079 * 21 20 19 37 37 H 1.08996 * 109.47443 * 300.00213 * 22 21 20 38 38 H 1.09004 * 109.47262 * 60.00452 * 22 21 20 39 39 H 1.09007 * 109.47293 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47545 * 59.99808 * 23 21 20 41 41 H 1.09007 * 109.47067 * 180.02562 * 23 21 20 42 42 H 1.08995 * 109.47064 * 299.99753 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0365 5 6 1.4969 2.1672 1.2044 6 1 0.8798 3.0440 1.0742 7 6 1.7877 1.7111 2.4727 8 7 2.5387 0.6432 2.6313 9 14 1.1150 2.6100 3.9657 10 1 0.3041 3.7716 3.5203 11 1 0.2629 1.6864 4.7570 12 1 2.2426 3.0860 4.8064 13 7 1.5910 2.1207 -1.2233 14 6 2.5283 1.8857 -2.3297 15 6 1.9738 2.4891 -3.5944 16 6 2.3502 3.7641 -3.9873 17 6 1.8167 4.2803 -5.1574 18 7 0.9694 3.5455 -5.8592 19 6 0.6304 2.3322 -5.4552 20 8 -0.2394 1.6071 -6.1986 21 6 -0.7396 2.2169 -7.3902 22 6 0.1837 1.8786 -8.5623 23 6 -2.1464 1.6905 -7.6807 24 7 1.1262 1.8066 -4.3465 25 1 -0.3634 0.5976 -0.8361 26 1 -0.3633 0.4253 0.9355 27 1 -0.3634 -1.0228 -0.0995 28 1 1.8933 -0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 2.7430 0.3221 3.5234 31 1 1.4617 3.1083 -1.0625 32 1 3.4879 2.3474 -2.0972 33 1 2.6652 0.8133 -2.4685 34 1 3.0443 4.3419 -3.3950 35 1 2.0886 5.2707 -5.4918 36 1 -0.7765 3.2982 -7.2571 37 1 1.1860 2.2536 -8.3554 38 1 0.2207 0.7973 -8.6955 39 1 -0.1980 2.3433 -9.4715 40 1 -2.8042 1.9314 -6.8456 41 1 -2.5278 2.1553 -8.5899 42 1 -2.1095 0.6093 -7.8138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:07 Heat of formation + Delta-G solvation = 8.132033 kcal Electronic energy + Delta-G solvation = -21694.152682 eV Core-core repulsion = 18481.868244 eV Total energy + Delta-G solvation = -3212.284438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14207 -38.75873 -36.42328 -34.06259 -33.58171 -32.32259 -31.15559 -30.17804 -27.50193 -27.13956 -25.15566 -23.99557 -23.16934 -22.75808 -20.93938 -19.03525 -18.50938 -17.62747 -16.51042 -16.04536 -15.62751 -15.01858 -14.84574 -14.56823 -14.22914 -13.93629 -13.59188 -13.55666 -13.27749 -12.68837 -12.52678 -12.51924 -12.18149 -12.09338 -11.81009 -11.41249 -11.14957 -11.09937 -10.95427 -10.85370 -10.81585 -10.50708 -10.33717 -10.04972 -9.76434 -9.32587 -8.99070 -8.88794 -8.76451 -8.49062 -7.32368 -6.03385 -4.08778 1.12545 1.18018 2.56241 3.27782 3.36375 3.39854 3.86643 4.05363 4.38940 4.54982 4.64895 4.69935 4.76634 5.01767 5.19690 5.24518 5.27709 5.32077 5.43835 5.51878 5.56139 5.61021 5.75035 5.89411 5.96356 6.00586 6.10125 6.32218 6.58154 6.77722 6.90654 6.94021 7.25522 7.27415 7.32653 7.51097 7.75097 7.78759 7.84153 8.22081 8.26429 8.33455 8.59927 8.98995 9.55880 11.02666 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.003543 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.653307 B = 7902.104748 C = 8250.192419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.674 5.674 14 C 0.103 3.897 15 C 0.237 3.763 16 C -0.267 4.267 17 C 0.180 3.820 18 N -0.579 5.579 19 C 0.499 3.501 20 O -0.285 6.285 21 C 0.086 3.914 22 C -0.168 4.168 23 C -0.151 4.151 24 N -0.505 5.505 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.086 0.914 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 5.655 -18.601 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.306 5.306 14 C -0.027 4.027 15 C 0.090 3.910 16 C -0.290 4.290 17 C 0.016 3.984 18 N -0.310 5.310 19 C 0.196 3.804 20 O -0.187 6.187 21 C 0.029 3.971 22 C -0.225 4.225 23 C -0.208 4.208 24 N -0.230 5.230 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.104 0.896 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.229 4.183 -19.218 19.931 hybrid contribution 0.999 1.649 1.493 2.438 sum -2.230 5.832 -17.725 18.792 Atomic orbital electron populations 1.21425 0.97440 0.97275 1.01457 1.21422 0.95242 0.97950 0.99413 1.19169 0.93433 0.91784 0.84499 0.97880 1.21187 1.31720 1.12020 0.90231 0.92228 1.24873 0.95056 0.95008 0.98845 1.69896 1.37355 1.23011 1.22339 0.86514 0.78723 0.79781 0.82843 1.19788 1.20986 1.21147 1.60637 1.46719 1.16306 1.06906 1.20919 0.93489 1.01414 0.86893 1.21805 0.86640 0.89373 0.93197 1.22644 1.06899 0.98645 1.00803 1.22827 0.88174 0.98029 0.89368 1.67919 1.19293 1.07358 1.36399 1.20712 0.87860 0.84736 0.87063 1.86163 1.55315 1.41478 1.35730 1.22425 0.93689 0.99251 0.81760 1.22224 1.00209 1.02519 0.97597 1.21909 0.93980 1.02565 1.02322 1.67500 1.12743 1.38207 1.04580 0.93331 0.93126 0.96820 0.89620 0.96900 0.92970 0.85126 0.93542 0.89226 0.83405 0.81482 0.89077 0.92064 0.91848 0.90969 0.91578 0.90351 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.46 37.16 0.35 -2.43 16 2 C -0.10 -2.49 5.57 -26.73 -0.15 -2.64 16 3 C 0.22 5.31 2.30 -68.87 -0.16 5.15 16 4 H 0.00 0.09 7.84 -51.93 -0.41 -0.31 16 5 C -0.51 -13.50 7.33 -34.44 -0.25 -13.75 16 6 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.74 11.34 55.43 0.63 -24.11 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -14.01 5.50 -109.22 -0.60 -14.61 16 14 C 0.10 1.83 5.81 -4.98 -0.03 1.80 16 15 C 0.24 3.90 6.38 -82.26 -0.52 3.38 16 16 C -0.27 -3.45 9.83 -39.32 -0.39 -3.84 16 17 C 0.18 2.13 11.30 -17.22 -0.19 1.94 16 18 N -0.58 -8.16 8.66 -14.73 -0.13 -8.28 16 19 C 0.50 8.24 8.45 -91.25 -0.77 7.47 16 20 O -0.28 -4.42 9.84 -18.09 -0.18 -4.60 16 21 C 0.09 0.96 3.09 -26.74 -0.08 0.88 16 22 C -0.17 -1.59 9.53 37.16 0.35 -1.23 16 23 C -0.15 -1.33 9.56 37.15 0.36 -0.97 16 24 N -0.50 -9.26 10.40 -10.94 -0.11 -9.37 16 25 H 0.05 1.13 7.50 -51.93 -0.39 0.74 16 26 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 2.31 6.13 -51.93 -0.32 1.99 16 29 H 0.01 0.29 7.43 -51.93 -0.39 -0.10 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.33 6.68 8.24 -39.29 -0.32 6.35 16 32 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.09 1.70 7.40 -51.93 -0.38 1.31 16 34 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.09 1.03 6.96 -51.92 -0.36 0.67 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.07 346.47 -8.48 -38.56 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.71 Total: 3.93 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.58 Total: -2.63 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.21 Total: -56.37 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.18 Total: -4.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.07 -8.48 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.687 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds