Wall clock time and date at job start Tue Mar 31 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47457 * 2 1 4 4 H 1.08996 * 109.47318 * 54.86003 * 3 2 1 5 5 C 1.50701 * 109.47353 * 174.86130 * 3 2 1 6 6 H 1.08002 * 119.99713 * 119.99941 * 5 3 2 7 7 C 1.37875 * 120.00000 * 300.00179 * 5 3 2 8 8 N 1.31511 * 119.99927 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00100 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47681 * 89.99498 * 9 7 5 11 11 H 1.48498 * 109.47113 * 209.99948 * 9 7 5 12 12 H 1.48507 * 109.47240 * 329.99485 * 9 7 5 13 13 N 1.46907 * 109.46789 * 294.86095 * 3 2 1 14 14 C 1.46900 * 110.99898 * 153.68054 * 13 3 2 15 15 C 1.50697 * 109.47143 * 176.10250 * 14 13 3 16 16 C 1.38238 * 120.40786 * 95.00349 * 15 14 13 17 17 C 1.39378 * 118.34923 * 180.02562 * 16 15 14 18 18 O 1.35519 * 120.50817 * 179.97438 * 17 16 15 19 19 C 1.42897 * 116.99705 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47474 * 209.99782 * 19 18 17 21 21 C 1.53005 * 109.47184 * 89.99677 * 19 18 17 22 22 N 1.32820 * 118.97871 * 0.24833 * 17 16 15 23 23 C 1.31773 * 120.71634 * 359.49293 * 22 17 16 24 24 N 1.31790 * 121.81262 * 0.52209 * 23 22 17 25 25 H 1.09005 * 109.47081 * 306.14636 * 1 2 3 26 26 H 1.09003 * 109.46963 * 66.14149 * 1 2 3 27 27 H 1.08996 * 109.47571 * 186.14513 * 1 2 3 28 28 H 1.08991 * 109.47203 * 239.99288 * 2 1 3 29 29 H 1.09001 * 109.46993 * 119.99870 * 2 1 3 30 30 H 0.97002 * 120.00387 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99907 * 29.73375 * 13 3 2 32 32 H 1.09009 * 109.46851 * 56.10514 * 14 13 3 33 33 H 1.08999 * 109.47252 * 296.11201 * 14 13 3 34 34 H 1.07997 * 120.82517 * 0.04302 * 16 15 14 35 35 H 1.09004 * 109.47600 * 330.00272 * 19 18 17 36 36 H 1.09006 * 109.47075 * 300.00247 * 20 19 18 37 37 H 1.09003 * 109.47013 * 59.99543 * 20 19 18 38 38 H 1.08998 * 109.47562 * 180.02562 * 20 19 18 39 39 H 1.09006 * 109.46827 * 60.00083 * 21 19 18 40 40 H 1.08998 * 109.47298 * 179.97438 * 21 19 18 41 41 H 1.08996 * 109.47488 * 300.00202 * 21 19 18 42 42 H 1.07994 * 119.09124 * 180.24017 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8403 5 6 3.5417 1.4443 0.1273 6 1 4.1487 1.8883 -0.6479 7 6 4.1405 0.8793 1.2332 8 7 3.4012 0.3391 2.1772 9 14 6.0017 0.8822 1.3913 10 1 6.4370 2.1157 2.0944 11 1 6.4346 -0.3082 2.1663 12 1 6.6135 0.8414 0.0387 13 7 1.6543 2.0982 -1.2567 14 6 1.5447 3.5523 -1.0797 15 6 1.2423 4.1986 -2.4070 16 6 -0.0625 4.4788 -2.7677 17 6 -0.2932 5.0765 -4.0055 18 8 -1.5550 5.3698 -4.4034 19 6 -1.7050 5.9821 -5.6858 20 6 -2.9417 6.8828 -5.6796 21 6 -1.8692 4.8976 -6.7527 22 7 0.7423 5.3491 -4.7914 23 6 1.9712 5.0697 -4.4067 24 7 2.2234 4.5048 -3.2430 25 1 -0.3633 0.6062 0.8299 26 1 -0.3633 0.4157 -0.9399 27 1 -0.3634 -1.0217 0.1100 28 1 1.8933 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 3.8225 -0.0581 2.9555 31 1 0.7945 1.7120 -1.6170 32 1 2.4853 3.9430 -0.6913 33 1 0.7417 3.7733 -0.3765 34 1 -0.8827 4.2408 -2.1067 35 1 -0.8212 6.5799 -5.9087 36 1 -3.8255 6.2849 -5.4568 37 1 -2.8247 7.6553 -4.9195 38 1 -3.0563 7.3494 -6.6579 39 1 -2.7531 4.2998 -6.5299 40 1 -1.9841 5.3646 -7.7308 41 1 -0.9882 4.2559 -6.7572 42 1 2.7941 5.3062 -5.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:22 Heat of formation + Delta-G solvation = 0.265930 kcal Electronic energy + Delta-G solvation = -21569.370201 eV Core-core repulsion = 18356.744664 eV Total energy + Delta-G solvation = -3212.625537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13166 -38.90267 -36.49222 -33.96276 -33.57927 -32.08217 -31.36219 -30.49932 -27.55301 -27.11557 -25.37082 -24.18086 -23.06888 -22.30648 -21.02714 -19.60807 -18.39444 -17.42893 -16.28371 -15.97202 -15.36455 -15.30110 -14.93933 -14.87927 -14.33252 -14.21954 -13.86159 -13.51686 -13.15351 -12.76020 -12.62633 -12.56838 -12.37725 -12.21182 -11.92254 -11.42450 -11.29840 -11.16447 -11.08494 -10.80633 -10.61412 -10.55538 -10.11528 -9.94211 -9.72556 -9.64281 -9.15298 -9.08653 -8.99659 -8.33239 -7.30708 -5.95013 -3.98579 1.06194 1.29663 2.76165 3.35794 3.42164 3.48277 3.90176 4.06632 4.29479 4.48501 4.58166 4.69632 4.81727 4.96969 5.20524 5.25571 5.29907 5.34008 5.42940 5.46825 5.53759 5.60062 5.67142 5.82461 5.92663 5.98739 6.13030 6.14450 6.29697 6.40378 6.47899 6.82136 6.97235 7.04741 7.14535 7.23585 7.42847 7.75891 7.93638 8.20823 8.28603 8.37143 8.70108 9.10400 9.66456 11.10554 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.003569 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.404062 B = 7842.503493 C = 8507.831657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.492 4.492 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.111 3.889 15 C 0.224 3.776 16 C -0.246 4.246 17 C 0.360 3.640 18 O -0.299 6.299 19 C 0.079 3.921 20 C -0.150 4.150 21 C -0.168 4.168 22 N -0.586 5.586 23 C 0.329 3.671 24 N -0.517 5.517 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.317 0.683 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 10.381 -13.419 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.531 4.531 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.019 4.019 15 C 0.081 3.919 16 C -0.270 4.270 17 C 0.174 3.826 18 O -0.204 6.204 19 C 0.023 3.977 20 C -0.208 4.208 21 C -0.226 4.226 22 N -0.317 5.317 23 C 0.041 3.959 24 N -0.235 5.235 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.165 0.835 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.961 10.483 -13.933 20.081 hybrid contribution -0.500 -0.125 0.907 1.043 sum -10.461 10.358 -13.026 19.657 Atomic orbital electron populations 1.21893 0.99589 0.99861 0.99496 1.21777 0.91209 1.00185 1.03261 1.19205 0.95732 0.89945 0.83729 0.97728 1.21240 0.91076 1.36300 1.04509 0.91702 1.24952 0.98200 0.95597 0.95805 1.69867 1.34772 1.39518 1.09652 0.86527 0.85728 0.77264 0.78078 1.20875 1.21466 1.19823 1.60664 1.36309 0.99914 1.33751 1.20829 1.02277 0.90881 0.87918 1.21848 0.86985 0.87725 0.95380 1.21845 0.99733 1.07992 0.97421 1.20000 0.84649 0.88506 0.89462 1.86292 1.22194 1.74854 1.37045 1.22392 0.99989 0.94472 0.80809 1.21910 0.96910 0.99146 1.02797 1.22216 1.02872 0.99216 0.98295 1.67996 1.00928 1.26274 1.36504 1.24731 0.91487 0.88611 0.91051 1.68367 1.36868 1.13978 1.04311 0.93800 0.94683 0.94291 0.93948 0.88049 0.93101 0.86532 0.88123 0.94238 0.83502 0.89161 0.91575 0.91804 0.90445 0.91953 0.91056 0.91849 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.50 16 2 C -0.13 -2.92 5.35 -26.73 -0.14 -3.06 16 3 C 0.22 5.38 2.03 -68.86 -0.14 5.24 16 4 H 0.01 0.13 7.83 -51.93 -0.41 -0.27 16 5 C -0.49 -13.50 8.62 -34.44 -0.30 -13.80 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.29 11.29 55.43 0.63 -24.66 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.67 -14.20 6.27 -109.22 -0.68 -14.89 16 14 C 0.11 2.07 5.80 -4.98 -0.03 2.04 16 15 C 0.22 3.78 6.36 -82.31 -0.52 3.26 16 16 C -0.25 -3.67 9.79 -39.16 -0.38 -4.05 16 17 C 0.36 5.18 7.49 -16.70 -0.13 5.05 16 18 O -0.30 -3.86 9.78 -18.25 -0.18 -4.03 16 19 C 0.08 0.80 3.12 -26.73 -0.08 0.71 16 20 C -0.15 -1.12 9.56 37.15 0.36 -0.77 16 21 C -0.17 -1.52 9.53 37.16 0.35 -1.17 16 22 N -0.59 -8.20 8.81 -14.64 -0.13 -8.33 16 23 C 0.33 4.64 12.28 -92.18 -1.13 3.51 16 24 N -0.52 -8.83 10.37 -10.86 -0.11 -8.94 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.59 6.65 -51.93 -0.35 0.25 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.32 6.15 6.60 -39.29 -0.26 5.89 16 32 H 0.10 2.07 7.99 -51.92 -0.41 1.66 16 33 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.09 0.95 7.02 -51.93 -0.36 0.59 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.20 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -29.63 347.85 -8.85 -38.48 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.71 Total: 4.70 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.88 Total: -4.12 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.30 Total: -56.82 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.63 -8.85 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.751 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds