Wall clock time and date at job start Tue Mar 31 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47457 * 2 1 4 4 H 1.08996 * 109.47318 * 54.86003 * 3 2 1 5 5 C 1.50701 * 109.47353 * 174.86130 * 3 2 1 6 6 H 1.08002 * 119.99713 * 119.99941 * 5 3 2 7 7 C 1.37875 * 120.00000 * 300.00179 * 5 3 2 8 8 N 1.31511 * 119.99927 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00100 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47681 * 89.99498 * 9 7 5 11 11 H 1.48498 * 109.47113 * 209.99948 * 9 7 5 12 12 H 1.48507 * 109.47240 * 329.99485 * 9 7 5 13 13 N 1.46907 * 109.46789 * 294.86095 * 3 2 1 14 14 C 1.46900 * 110.99898 * 153.68054 * 13 3 2 15 15 C 1.50697 * 109.47143 * 176.10250 * 14 13 3 16 16 C 1.38238 * 120.40786 * 95.00349 * 15 14 13 17 17 C 1.39378 * 118.34923 * 180.02562 * 16 15 14 18 18 O 1.35519 * 120.50817 * 179.97438 * 17 16 15 19 19 C 1.42897 * 116.99705 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47474 * 209.99782 * 19 18 17 21 21 C 1.53005 * 109.47184 * 89.99677 * 19 18 17 22 22 N 1.32820 * 118.97871 * 0.24833 * 17 16 15 23 23 C 1.31773 * 120.71634 * 359.49293 * 22 17 16 24 24 N 1.31790 * 121.81262 * 0.52209 * 23 22 17 25 25 H 1.09005 * 109.47081 * 306.14636 * 1 2 3 26 26 H 1.09003 * 109.46963 * 66.14149 * 1 2 3 27 27 H 1.08996 * 109.47571 * 186.14513 * 1 2 3 28 28 H 1.08991 * 109.47203 * 239.99288 * 2 1 3 29 29 H 1.09001 * 109.46993 * 119.99870 * 2 1 3 30 30 H 0.97002 * 120.00387 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99907 * 29.73375 * 13 3 2 32 32 H 1.09009 * 109.46851 * 56.10514 * 14 13 3 33 33 H 1.08999 * 109.47252 * 296.11201 * 14 13 3 34 34 H 1.07997 * 120.82517 * 0.04302 * 16 15 14 35 35 H 1.09004 * 109.47600 * 330.00272 * 19 18 17 36 36 H 1.09006 * 109.47075 * 300.00247 * 20 19 18 37 37 H 1.09003 * 109.47013 * 59.99543 * 20 19 18 38 38 H 1.08998 * 109.47562 * 180.02562 * 20 19 18 39 39 H 1.09006 * 109.46827 * 60.00083 * 21 19 18 40 40 H 1.08998 * 109.47298 * 179.97438 * 21 19 18 41 41 H 1.08996 * 109.47488 * 300.00202 * 21 19 18 42 42 H 1.07994 * 119.09124 * 180.24017 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8403 5 6 3.5417 1.4443 0.1273 6 1 4.1487 1.8883 -0.6479 7 6 4.1405 0.8793 1.2332 8 7 3.4012 0.3391 2.1772 9 14 6.0017 0.8822 1.3913 10 1 6.4370 2.1157 2.0944 11 1 6.4346 -0.3082 2.1663 12 1 6.6135 0.8414 0.0387 13 7 1.6543 2.0982 -1.2567 14 6 1.5447 3.5523 -1.0797 15 6 1.2423 4.1986 -2.4070 16 6 -0.0625 4.4788 -2.7677 17 6 -0.2932 5.0765 -4.0055 18 8 -1.5550 5.3698 -4.4034 19 6 -1.7050 5.9821 -5.6858 20 6 -2.9417 6.8828 -5.6796 21 6 -1.8692 4.8976 -6.7527 22 7 0.7423 5.3491 -4.7914 23 6 1.9712 5.0697 -4.4067 24 7 2.2234 4.5048 -3.2430 25 1 -0.3633 0.6062 0.8299 26 1 -0.3633 0.4157 -0.9399 27 1 -0.3634 -1.0217 0.1100 28 1 1.8933 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 3.8225 -0.0581 2.9555 31 1 0.7945 1.7120 -1.6170 32 1 2.4853 3.9430 -0.6913 33 1 0.7417 3.7733 -0.3765 34 1 -0.8827 4.2408 -2.1067 35 1 -0.8212 6.5799 -5.9087 36 1 -3.8255 6.2849 -5.4568 37 1 -2.8247 7.6553 -4.9195 38 1 -3.0563 7.3494 -6.6579 39 1 -2.7531 4.2998 -6.5299 40 1 -1.9841 5.3646 -7.7308 41 1 -0.9882 4.2559 -6.7572 42 1 2.7941 5.3062 -5.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:21 Heat of formation + Delta-G solvation = -18.824688 kcal Electronic energy + Delta-G solvation = -21570.198032 eV Core-core repulsion = 18356.744664 eV Total energy + Delta-G solvation = -3213.453369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25930 -39.92186 -38.22183 -35.35325 -34.54130 -33.88181 -32.72519 -31.87646 -28.88659 -28.19606 -27.00286 -25.32195 -24.64468 -23.65666 -22.04625 -21.47287 -19.42421 -18.63622 -18.31968 -17.03394 -16.74575 -16.49304 -16.37039 -16.23341 -15.78374 -15.48331 -15.19364 -14.76548 -14.48123 -14.22797 -13.90979 -13.56076 -13.38906 -13.28255 -13.14490 -12.99414 -12.89188 -12.70816 -12.52247 -12.13750 -12.01863 -11.96613 -11.64594 -11.58550 -11.49444 -11.18217 -10.97694 -10.41344 -10.34229 -10.13152 -9.06475 -8.04938 -6.15805 -0.10802 0.12192 1.43135 1.44450 1.55532 1.78670 2.46499 2.72266 2.98970 3.14250 3.20876 3.61573 3.84385 3.92052 3.99565 4.03554 4.19566 4.24358 4.48564 4.54260 4.57199 4.58176 4.68443 4.71504 4.78770 4.82770 4.85208 4.87415 5.10077 5.17697 5.23906 5.24638 5.30026 5.37137 5.58187 5.76630 5.87663 5.90059 6.16852 6.34060 6.45757 6.91527 6.96707 7.12576 7.52701 8.98270 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.003569 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.404062 B = 7842.503493 C = 8507.831657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.228 3.772 4 H -0.020 1.020 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.117 3.883 15 C 0.212 3.788 16 C -0.245 4.245 17 C 0.360 3.640 18 O -0.304 6.304 19 C 0.070 3.930 20 C -0.145 4.145 21 C -0.164 4.164 22 N -0.581 5.581 23 C 0.330 3.670 24 N -0.550 5.550 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 11.115 -14.983 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.120 3.880 4 H -0.003 1.003 5 C -0.550 4.550 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.013 4.013 15 C 0.069 3.931 16 C -0.268 4.268 17 C 0.173 3.827 18 O -0.209 6.209 19 C 0.015 3.985 20 C -0.202 4.202 21 C -0.222 4.222 22 N -0.312 5.312 23 C 0.043 3.957 24 N -0.269 5.269 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.180 0.820 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.086 11.229 -15.514 22.128 hybrid contribution -0.209 -0.282 1.299 1.345 sum -11.295 10.947 -14.215 21.201 Atomic orbital electron populations 1.21757 0.96088 1.01272 1.00601 1.21597 0.94348 0.98757 1.01265 1.18961 0.94097 0.90706 0.84236 1.00257 1.21462 0.92819 1.36405 1.04292 0.93432 1.25619 1.02106 0.95327 0.95570 1.69981 1.36152 1.39835 1.09903 0.85629 0.81072 0.77468 0.77876 1.20340 1.20797 1.19908 1.60483 1.37231 1.01358 1.32019 1.20671 1.01458 0.89421 0.89733 1.21489 0.87973 0.88902 0.94763 1.21882 0.99215 1.07709 0.98022 1.20120 0.85322 0.87934 0.89310 1.86300 1.21221 1.74788 1.38582 1.22721 1.01037 0.94958 0.79781 1.21927 0.95549 0.98582 1.04183 1.22198 1.01970 0.98781 0.99218 1.68105 1.00856 1.25979 1.36229 1.25352 0.92441 0.87458 0.90452 1.68316 1.37617 1.15372 1.05560 0.93977 0.92516 0.92451 0.94738 0.91124 0.93040 0.85274 0.90850 0.92729 0.81977 0.89694 0.91318 0.92037 0.88039 0.91731 0.88685 0.93812 0.75521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.63 71.98 0.69 -4.42 16 2 C -0.12 -5.66 5.35 30.59 0.16 -5.50 16 3 C 0.23 11.34 2.03 44.17 0.09 11.43 16 4 H -0.02 -1.09 7.83 -2.39 -0.02 -1.10 16 5 C -0.51 -28.75 8.62 25.60 0.22 -28.53 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.35 16 9 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.68 -28.81 6.27 -499.45 -3.13 -31.94 16 14 C 0.12 4.44 5.80 85.56 0.50 4.93 16 15 C 0.21 7.09 6.36 42.46 0.27 7.37 16 16 C -0.24 -7.01 9.79 22.54 0.22 -6.79 16 17 C 0.36 9.84 7.49 84.82 0.64 10.48 16 18 O -0.30 -7.32 9.78 -88.22 -0.86 -8.18 16 19 C 0.07 1.26 3.12 30.59 0.10 1.36 16 20 C -0.15 -1.79 9.56 71.98 0.69 -1.10 16 21 C -0.16 -2.61 9.53 71.98 0.69 -1.93 16 22 N -0.58 -15.38 8.81 -312.89 -2.76 -18.14 16 23 C 0.33 8.90 12.28 180.89 2.22 11.12 16 24 N -0.55 -18.60 10.37 -188.28 -1.95 -20.55 16 25 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.06 1.81 6.65 -2.39 -0.02 1.80 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.33 12.51 6.60 -89.70 -0.59 11.92 16 32 H 0.07 3.16 7.99 -2.38 -0.02 3.14 16 33 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 34 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.08 1.62 7.02 -2.38 -0.02 1.61 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.23 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -64.44 347.85 0.91 -63.54 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.41 Total: 21.26 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.93 Total: -0.46 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -7.60 Total: -122.98 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.86 Total: -8.18 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.44 0.91 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.711 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds