Wall clock time and date at job start Tue Mar 31 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 H 1.08995 * 109.46878 * 56.55637 * 3 2 1 5 5 C 1.50696 * 109.47155 * 176.55432 * 3 2 1 6 6 H 1.08004 * 119.99609 * 120.00181 * 5 3 2 7 7 C 1.37870 * 120.00460 * 300.00694 * 5 3 2 8 8 N 1.31516 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00218 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47252 * 89.99615 * 9 7 5 11 11 H 1.48509 * 109.47368 * 209.99524 * 9 7 5 12 12 H 1.48497 * 109.47560 * 329.99705 * 9 7 5 13 13 N 1.46899 * 109.47177 * 296.55974 * 3 2 1 14 14 C 1.46846 * 110.99841 * 298.85724 * 13 3 2 15 15 C 1.53037 * 109.52441 * 174.16104 * 14 13 3 16 16 C 1.53118 * 109.27994 * 59.18018 * 15 14 13 17 17 C 1.50699 * 109.52941 * 182.44280 * 16 15 14 18 18 N 1.30279 * 126.28102 * 60.02051 * 17 16 15 19 19 N 1.28668 * 109.37937 * 179.97438 * 18 17 16 20 20 C 1.30276 * 109.38115 * 0.02562 * 19 18 17 21 21 C 1.50696 * 126.28252 * 180.02562 * 20 19 18 22 22 O 1.34360 * 107.43545 * 359.75675 * 20 19 18 23 23 C 1.53121 * 109.15833 * 302.34935 * 16 15 14 24 24 C 1.46850 * 111.00055 * 174.65296 * 13 3 2 25 25 H 1.09001 * 109.47391 * 65.06403 * 1 2 3 26 26 H 1.09004 * 109.47004 * 185.06731 * 1 2 3 27 27 H 1.08999 * 109.46723 * 305.06390 * 1 2 3 28 28 H 1.09004 * 109.46803 * 240.00723 * 2 1 3 29 29 H 1.08993 * 109.47518 * 120.00775 * 2 1 3 30 30 H 0.97002 * 119.99906 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46235 * 54.15040 * 14 13 3 32 32 H 1.09002 * 109.46804 * 294.17972 * 14 13 3 33 33 H 1.08994 * 109.50790 * 179.12532 * 15 14 13 34 34 H 1.09009 * 109.50378 * 299.20476 * 15 14 13 35 35 H 1.08997 * 109.52206 * 62.24935 * 16 15 14 36 36 H 1.09000 * 109.47350 * 89.96763 * 21 20 19 37 37 H 1.08995 * 109.47237 * 209.97446 * 21 20 19 38 38 H 1.09005 * 109.47043 * 329.97264 * 21 20 19 39 39 H 1.09007 * 109.50136 * 177.59267 * 23 16 15 40 40 H 1.09000 * 109.50681 * 297.70757 * 23 16 15 41 41 H 1.08998 * 109.46563 * 65.81921 * 24 13 3 42 42 H 1.09003 * 109.45720 * 305.85413 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6272 1.9738 0.8575 5 6 3.5445 1.4433 0.0854 6 1 4.1298 1.8950 -0.7020 7 6 4.1739 0.8675 1.1685 8 7 3.4612 0.3178 2.1274 9 14 6.0389 0.8692 1.2746 10 1 6.4936 2.0958 1.9775 11 1 6.4931 -0.3288 2.0255 12 1 6.6127 0.8420 -0.0948 13 7 1.6194 2.1106 -1.2388 14 6 2.1804 1.4367 -2.4167 15 6 1.6071 2.0670 -3.6880 16 6 1.9564 3.5575 -3.7151 17 6 1.3436 4.1965 -4.9346 18 7 0.0742 4.2454 -5.2238 19 7 -0.0860 4.8668 -6.3389 20 6 1.0757 5.2351 -6.7994 21 6 1.3295 5.9888 -8.0794 22 8 2.0056 4.8247 -5.9207 23 6 1.4025 4.2264 -2.4540 24 6 1.9818 3.5336 -1.2185 25 1 -0.3634 0.4333 -0.9319 26 1 -0.3633 -1.0237 0.0908 27 1 -0.3633 0.5904 0.8412 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 3.9040 -0.0870 2.8896 31 1 1.9211 0.3783 -2.3874 32 1 3.2650 1.5449 -2.4150 33 1 2.0354 1.5769 -4.5623 34 1 0.5238 1.9463 -3.6974 35 1 3.0394 3.6774 -3.7452 36 1 1.3094 7.0603 -7.8803 37 1 2.3057 5.7114 -8.4770 38 1 0.5568 5.7400 -8.8069 39 1 1.6848 5.2793 -2.4466 40 1 0.3160 4.1404 -2.4436 41 1 3.0673 3.6320 -1.2223 42 1 1.5783 3.9982 -0.3188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:13 Heat of formation + Delta-G solvation = 27.451134 kcal Electronic energy + Delta-G solvation = -22462.620927 eV Core-core repulsion = 19251.174229 eV Total energy + Delta-G solvation = -3211.446699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.21177 -38.72270 -36.14040 -35.33248 -33.01961 -31.90797 -30.96109 -30.23061 -28.18962 -26.52540 -24.68505 -23.05558 -22.75361 -22.48691 -21.72483 -19.64087 -18.90987 -17.37378 -17.17193 -16.38382 -15.66874 -14.92994 -14.84756 -14.31278 -14.08620 -13.69339 -13.44905 -13.31011 -13.13571 -13.03284 -12.73880 -12.37827 -12.15046 -11.83179 -11.70751 -11.49582 -11.21231 -11.17314 -10.89083 -10.77560 -10.69057 -10.52967 -10.47199 -10.31749 -9.82321 -9.67402 -9.43712 -9.26996 -9.08971 -8.38357 -7.15205 -6.01196 -4.15114 1.14777 2.22333 2.40263 3.23836 3.31839 3.33596 3.78217 4.36156 4.36937 4.67128 4.92269 4.96258 5.01008 5.10069 5.16794 5.22874 5.27138 5.39931 5.61391 5.69307 5.70103 5.92131 5.99054 6.02366 6.13533 6.29151 6.33053 6.46893 6.50613 6.59160 6.69964 6.71626 6.81977 7.11328 7.20343 7.32880 7.59653 7.74674 7.95264 8.13301 8.29553 8.33683 8.44126 8.94855 9.52715 10.97779 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.004225 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.247340 B = 6625.733677 C = 7291.067292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.063 3.937 15 C -0.106 4.106 16 C 0.009 3.991 17 C 0.183 3.817 18 N -0.284 5.284 19 N -0.290 5.290 20 C 0.144 3.856 21 C -0.055 4.055 22 O -0.229 6.229 23 C -0.105 4.105 24 C 0.067 3.933 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.261 0.739 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 7.915 -14.826 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.066 4.066 15 C -0.144 4.144 16 C -0.012 4.012 17 C -0.027 4.027 18 N -0.130 5.130 19 N -0.137 5.137 20 C -0.067 4.067 21 C -0.112 4.112 22 O -0.108 6.108 23 C -0.143 4.143 24 C -0.062 4.062 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.761 7.619 -14.584 16.879 hybrid contribution 3.293 0.252 0.032 3.302 sum -0.468 7.871 -14.552 16.551 Atomic orbital electron populations 1.21702 0.98727 0.98386 1.00682 1.21629 0.92312 0.99124 1.02001 1.19283 0.92756 0.91080 0.86030 0.94215 1.21728 0.92771 1.37799 1.06073 0.92613 1.24898 0.97809 0.95013 0.95619 1.69874 1.34910 1.37799 1.09640 0.86702 0.86307 0.77564 0.78045 1.20751 1.21190 1.20096 1.62427 1.58442 1.00947 1.03905 1.21907 0.97253 0.98734 0.88685 1.21745 1.02985 0.90804 0.98891 1.20034 0.99970 0.95862 0.85305 1.28439 0.87873 0.94542 0.91873 1.74394 1.14897 1.15899 1.07761 1.74384 1.22190 1.12165 1.05010 1.27937 0.83015 1.00111 0.95663 1.20284 1.04819 0.98797 0.87339 1.84797 1.40484 1.56615 1.28952 1.21725 1.02246 0.98028 0.92330 1.21815 0.98364 0.90361 0.95683 0.93434 0.95646 0.94128 0.94784 0.88997 0.92871 0.90237 0.94215 0.92207 0.90139 0.88620 0.88586 0.89108 0.87761 0.92159 0.90084 0.94256 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.72 37.16 0.36 -2.38 16 2 C -0.11 -2.56 5.02 -26.73 -0.13 -2.70 16 3 C 0.21 5.03 1.76 -68.87 -0.12 4.91 16 4 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 5 C -0.54 -13.86 7.19 -34.45 -0.25 -14.11 16 6 H 0.06 1.42 5.84 -52.48 -0.31 1.11 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -24.18 11.30 55.43 0.63 -23.55 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.53 -10.53 4.12 -228.08 -0.94 -11.47 16 14 C 0.06 1.14 4.80 -3.83 -0.02 1.12 16 15 C -0.11 -1.62 5.36 -26.65 -0.14 -1.76 16 16 C 0.01 0.12 2.73 -91.65 -0.25 -0.13 16 17 C 0.18 2.76 7.00 -12.94 -0.09 2.67 16 18 N -0.28 -4.73 12.22 32.55 0.40 -4.33 16 19 N -0.29 -4.45 12.22 32.55 0.40 -4.05 16 20 C 0.14 1.76 8.48 -12.94 -0.11 1.65 16 21 C -0.05 -0.34 10.51 36.00 0.38 0.04 16 22 O -0.23 -3.16 10.87 5.40 0.06 -3.10 16 23 C -0.10 -1.59 5.36 -26.65 -0.14 -1.73 16 24 C 0.07 1.20 5.12 -3.83 -0.02 1.18 16 25 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.76 6.13 -51.93 -0.32 0.44 16 29 H 0.09 2.37 5.99 -51.93 -0.31 2.05 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.08 1.49 5.97 -51.93 -0.31 1.18 16 32 H 0.04 0.77 6.61 -51.93 -0.34 0.43 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.75 6.99 -51.93 -0.36 0.39 16 42 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.01 331.20 -6.68 -35.69 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.56 Total: -0.14 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.63 Total: -9.52 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.48 Total: -43.41 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.06 Total: -3.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.01 -6.68 -35.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.139 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds