Wall clock time and date at job start Tue Mar 31 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 H 1.08995 * 109.46878 * 56.55637 * 3 2 1 5 5 C 1.50696 * 109.47155 * 176.55432 * 3 2 1 6 6 H 1.08004 * 119.99609 * 120.00181 * 5 3 2 7 7 C 1.37870 * 120.00460 * 300.00694 * 5 3 2 8 8 N 1.31516 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00218 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47252 * 89.99615 * 9 7 5 11 11 H 1.48509 * 109.47368 * 209.99524 * 9 7 5 12 12 H 1.48497 * 109.47560 * 329.99705 * 9 7 5 13 13 N 1.46899 * 109.47177 * 296.55974 * 3 2 1 14 14 C 1.46846 * 110.99841 * 298.85724 * 13 3 2 15 15 C 1.53037 * 109.52441 * 174.16104 * 14 13 3 16 16 C 1.53118 * 109.27994 * 59.18018 * 15 14 13 17 17 C 1.50699 * 109.52941 * 182.44280 * 16 15 14 18 18 N 1.30279 * 126.28102 * 60.02051 * 17 16 15 19 19 N 1.28668 * 109.37937 * 179.97438 * 18 17 16 20 20 C 1.30276 * 109.38115 * 0.02562 * 19 18 17 21 21 C 1.50696 * 126.28252 * 180.02562 * 20 19 18 22 22 O 1.34360 * 107.43545 * 359.75675 * 20 19 18 23 23 C 1.53121 * 109.15833 * 302.34935 * 16 15 14 24 24 C 1.46850 * 111.00055 * 174.65296 * 13 3 2 25 25 H 1.09001 * 109.47391 * 65.06403 * 1 2 3 26 26 H 1.09004 * 109.47004 * 185.06731 * 1 2 3 27 27 H 1.08999 * 109.46723 * 305.06390 * 1 2 3 28 28 H 1.09004 * 109.46803 * 240.00723 * 2 1 3 29 29 H 1.08993 * 109.47518 * 120.00775 * 2 1 3 30 30 H 0.97002 * 119.99906 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46235 * 54.15040 * 14 13 3 32 32 H 1.09002 * 109.46804 * 294.17972 * 14 13 3 33 33 H 1.08994 * 109.50790 * 179.12532 * 15 14 13 34 34 H 1.09009 * 109.50378 * 299.20476 * 15 14 13 35 35 H 1.08997 * 109.52206 * 62.24935 * 16 15 14 36 36 H 1.09000 * 109.47350 * 89.96763 * 21 20 19 37 37 H 1.08995 * 109.47237 * 209.97446 * 21 20 19 38 38 H 1.09005 * 109.47043 * 329.97264 * 21 20 19 39 39 H 1.09007 * 109.50136 * 177.59267 * 23 16 15 40 40 H 1.09000 * 109.50681 * 297.70757 * 23 16 15 41 41 H 1.08998 * 109.46563 * 65.81921 * 24 13 3 42 42 H 1.09003 * 109.45720 * 305.85413 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6272 1.9738 0.8575 5 6 3.5445 1.4433 0.0854 6 1 4.1298 1.8950 -0.7020 7 6 4.1739 0.8675 1.1685 8 7 3.4612 0.3178 2.1274 9 14 6.0389 0.8692 1.2746 10 1 6.4936 2.0958 1.9775 11 1 6.4931 -0.3288 2.0255 12 1 6.6127 0.8420 -0.0948 13 7 1.6194 2.1106 -1.2388 14 6 2.1804 1.4367 -2.4167 15 6 1.6071 2.0670 -3.6880 16 6 1.9564 3.5575 -3.7151 17 6 1.3436 4.1965 -4.9346 18 7 0.0742 4.2454 -5.2238 19 7 -0.0860 4.8668 -6.3389 20 6 1.0757 5.2351 -6.7994 21 6 1.3295 5.9888 -8.0794 22 8 2.0056 4.8247 -5.9207 23 6 1.4025 4.2264 -2.4540 24 6 1.9818 3.5336 -1.2185 25 1 -0.3634 0.4333 -0.9319 26 1 -0.3633 -1.0237 0.0908 27 1 -0.3633 0.5904 0.8412 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 3.9040 -0.0870 2.8896 31 1 1.9211 0.3783 -2.3874 32 1 3.2650 1.5449 -2.4150 33 1 2.0354 1.5769 -4.5623 34 1 0.5238 1.9463 -3.6974 35 1 3.0394 3.6774 -3.7452 36 1 1.3094 7.0603 -7.8803 37 1 2.3057 5.7114 -8.4770 38 1 0.5568 5.7400 -8.8069 39 1 1.6848 5.2793 -2.4466 40 1 0.3160 4.1404 -2.4436 41 1 3.0673 3.6320 -1.2223 42 1 1.5783 3.9982 -0.3188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:12 Heat of formation + Delta-G solvation = 6.197886 kcal Electronic energy + Delta-G solvation = -22463.542537 eV Core-core repulsion = 19251.174229 eV Total energy + Delta-G solvation = -3212.368309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.27155 -40.21371 -37.22448 -36.88621 -34.39541 -33.45960 -32.37506 -31.64026 -29.33075 -28.15306 -26.14660 -24.64696 -24.11016 -23.57089 -23.05547 -21.18471 -20.54713 -18.43603 -18.24923 -18.24478 -17.22972 -16.44083 -15.92265 -15.77760 -15.50263 -15.05932 -14.84706 -14.64565 -14.43567 -13.97257 -13.74904 -13.53798 -13.47634 -13.27431 -13.19220 -12.93876 -12.91797 -12.75112 -12.52802 -12.28829 -12.16643 -12.07284 -11.90069 -11.73073 -11.54203 -11.41656 -11.07139 -10.93380 -10.43626 -10.36704 -8.87053 -7.98820 -6.21769 0.13311 1.23596 1.32303 1.39211 1.42079 1.49581 2.42719 2.83798 3.19374 3.39469 3.42565 3.71922 3.76709 3.93931 4.17898 4.32781 4.38337 4.49857 4.55420 4.58019 4.59789 4.64296 4.73417 4.75340 4.78993 4.86741 4.92472 4.96941 5.04577 5.06420 5.13526 5.24981 5.33223 5.41025 5.46947 5.54675 5.67548 5.84213 6.10564 6.24077 6.43178 6.72193 6.99773 7.27105 7.49387 8.95604 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.004225 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.247340 B = 6625.733677 C = 7291.067292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.533 5.533 14 C 0.067 3.933 15 C -0.094 4.094 16 C 0.014 3.986 17 C 0.178 3.822 18 N -0.310 5.310 19 N -0.330 5.330 20 C 0.163 3.837 21 C -0.056 4.056 22 O -0.232 6.232 23 C -0.092 4.092 24 C 0.068 3.932 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 8.950 -17.204 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.257 5.257 14 C -0.061 4.061 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.033 4.033 18 N -0.155 5.155 19 N -0.176 5.176 20 C -0.048 4.048 21 C -0.113 4.113 22 O -0.112 6.112 23 C -0.130 4.130 24 C -0.060 4.060 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.092 8.667 -16.987 19.319 hybrid contribution 3.068 -0.004 0.689 3.144 sum -0.024 8.663 -16.298 18.458 Atomic orbital electron populations 1.21563 0.96475 0.99494 1.00754 1.21475 0.94283 0.98304 1.00502 1.19034 0.91645 0.91343 0.86581 0.97754 1.21989 0.93941 1.37068 1.05784 0.92769 1.25587 1.01619 0.95029 0.95547 1.70008 1.36304 1.38675 1.10102 0.85783 0.81768 0.77345 0.78067 1.20560 1.21213 1.19493 1.62361 1.58450 1.01796 1.03097 1.21870 0.96512 0.98511 0.89195 1.21591 1.02323 0.91486 0.97810 1.19899 1.00544 0.95086 0.85039 1.28209 0.87597 0.95234 0.92305 1.74326 1.15805 1.16666 1.08723 1.74338 1.23830 1.14069 1.05358 1.29123 0.81914 0.97786 0.95949 1.20713 1.06624 0.99250 0.84718 1.84814 1.40710 1.56673 1.29006 1.21562 1.01448 0.98777 0.91224 1.21810 0.97771 0.89445 0.96996 0.92565 0.93835 0.94901 0.94590 0.92037 0.93054 0.90995 0.95461 0.90322 0.90898 0.87439 0.86315 0.86808 0.86226 0.90257 0.90908 0.95335 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.72 71.98 0.70 -4.29 16 2 C -0.11 -4.98 5.02 30.59 0.15 -4.82 16 3 C 0.22 10.61 1.76 44.17 0.08 10.69 16 4 H 0.00 0.25 8.07 -2.39 -0.02 0.23 16 5 C -0.55 -28.33 7.19 25.60 0.18 -28.15 16 6 H 0.05 2.77 5.84 -2.91 -0.02 2.75 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -51.04 11.30 21.44 0.24 -50.79 16 9 Si 0.94 42.32 29.54 68.60 2.03 44.35 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.53 -21.22 4.12 -875.51 -3.61 -24.83 16 14 C 0.07 2.42 4.80 86.33 0.41 2.83 16 15 C -0.09 -2.74 5.36 30.65 0.16 -2.58 16 16 C 0.01 0.40 2.73 -11.46 -0.03 0.37 16 17 C 0.18 5.07 7.00 88.34 0.62 5.69 16 18 N -0.31 -9.98 12.22 -165.50 -2.02 -12.00 16 19 N -0.33 -9.61 12.22 -165.51 -2.02 -11.64 16 20 C 0.16 3.57 8.48 88.34 0.75 4.32 16 21 C -0.06 -0.48 10.51 71.23 0.75 0.27 16 22 O -0.23 -5.84 10.87 -3.60 -0.04 -5.88 16 23 C -0.09 -2.68 5.36 30.65 0.16 -2.52 16 24 C 0.07 2.46 5.12 86.32 0.44 2.90 16 25 H 0.06 2.12 7.85 -2.39 -0.02 2.10 16 26 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.62 6.13 -2.38 -0.01 1.60 16 29 H 0.06 3.25 5.99 -2.39 -0.01 3.24 16 30 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.07 2.67 5.97 -2.39 -0.01 2.66 16 32 H 0.03 1.05 6.61 -2.39 -0.02 1.03 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.03 1.09 6.99 -2.39 -0.02 1.07 16 42 H 0.06 2.36 8.07 -2.39 -0.02 2.34 16 Total: -1.00 -63.57 331.20 0.42 -63.15 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.01 Total: 11.31 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 4.83 Total: -13.67 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -7.41 Total: -99.26 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.04 Total: -5.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -63.57 0.42 -63.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.348 kcal (2) G-P(sol) polarization free energy of solvation -63.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds