Wall clock time and date at job start Tue Mar 31 2020 01:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 C 1.50700 * 109.47026 * 239.99302 * 2 1 3 5 5 N 1.30854 * 125.42158 * 264.69420 * 4 2 1 6 6 C 1.33322 * 109.68302 * 179.86487 * 5 4 2 7 7 C 1.36659 * 107.78553 * 0.40095 * 6 5 4 8 8 C 1.46771 * 126.84136 * 179.76400 * 7 6 5 9 9 O 1.21677 * 120.00148 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99747 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99743 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46650 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46873 * 299.99135 * 12 11 10 14 14 C 1.52997 * 109.47444 * 59.99793 * 12 11 10 15 15 C 1.50704 * 109.46917 * 179.97438 * 12 11 10 16 16 H 1.08008 * 120.00146 * 1.33674 * 15 12 11 17 17 C 1.37870 * 120.00107 * 181.34794 * 15 12 11 18 18 N 1.31516 * 120.00103 * 193.97487 * 17 15 12 19 19 Si 1.86800 * 120.00272 * 13.96998 * 17 15 12 20 20 H 1.48500 * 109.47276 * 84.54924 * 19 17 15 21 21 H 1.48504 * 109.47399 * 204.55423 * 19 17 15 22 22 H 1.48508 * 109.46861 * 324.54980 * 19 17 15 23 23 N 1.34500 * 125.41182 * 85.00620 * 4 2 1 24 24 H 0.97001 * 126.47585 * 359.97438 * 23 4 2 25 25 H 1.08999 * 109.46863 * 60.00616 * 1 2 3 26 26 H 1.08997 * 109.47274 * 300.00454 * 1 2 3 27 27 H 1.09008 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46996 * 119.99921 * 2 1 3 29 29 H 1.08997 * 109.47318 * 59.99574 * 3 2 1 30 30 H 1.08998 * 109.47235 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47022 * 299.99905 * 3 2 1 32 32 H 1.08006 * 126.10439 * 180.17557 * 6 5 4 33 33 H 0.97001 * 119.99961 * 359.97438 * 10 8 7 34 34 H 1.09007 * 109.46605 * 299.99240 * 11 10 8 35 35 H 1.08994 * 109.47366 * 59.99521 * 11 10 8 36 36 H 1.09002 * 109.47127 * 69.37778 * 13 12 11 37 37 H 1.09000 * 109.47255 * 189.37200 * 13 12 11 38 38 H 1.09005 * 109.47560 * 309.37194 * 13 12 11 39 39 H 1.08996 * 109.47335 * 59.99768 * 14 12 11 40 40 H 1.09006 * 109.46806 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.46647 * 299.99445 * 14 12 11 42 42 H 0.97004 * 120.00221 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 7 2.3781 -1.9712 -1.2901 6 6 2.7715 -2.2707 -2.5283 7 6 2.6754 -1.1355 -3.2829 8 6 3.0086 -0.9934 -4.7052 9 8 3.4189 -1.9518 -5.3327 10 7 2.8600 0.1987 -5.3163 11 6 3.1920 0.3404 -6.7362 12 6 2.9358 1.7825 -7.1783 13 6 1.4610 2.1276 -6.9626 14 6 3.8076 2.7314 -6.3535 15 6 3.2779 1.9285 -8.6387 16 1 3.6212 1.0727 -9.2011 17 6 3.1530 3.1545 -9.2568 18 7 3.1811 3.2352 -10.5692 19 14 2.9438 4.7011 -8.2303 20 1 4.2775 5.1990 -7.8076 21 1 2.2598 5.7427 -9.0381 22 1 2.1275 4.3912 -7.0290 23 7 2.2021 -0.1483 -2.4404 24 1 2.0256 0.7758 -2.6767 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1096 -3.2371 -2.8724 33 1 2.5325 0.9626 -4.8162 34 1 4.2429 0.0949 -6.8897 35 1 2.5713 -0.3360 -7.3237 36 1 1.2537 2.1848 -5.8940 37 1 1.2410 3.0888 -7.4273 38 1 0.8374 1.3552 -7.4129 39 1 4.8583 2.4856 -6.5071 40 1 3.6247 3.7589 -6.6682 41 1 3.5605 2.6260 -5.2971 42 1 3.0928 4.0978 -11.0041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325207916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:41 Heat of formation + Delta-G solvation = -6.319830 kcal Electronic energy + Delta-G solvation = -22106.335830 eV Core-core repulsion = 18893.424712 eV Total energy + Delta-G solvation = -3212.911117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.37094 -40.63593 -38.44287 -36.32563 -35.22111 -33.93184 -33.23545 -30.44547 -28.09114 -28.04978 -27.72282 -26.99373 -24.72630 -22.99079 -21.73059 -21.36961 -20.85802 -19.62514 -18.11611 -17.38683 -16.86949 -16.80910 -16.74630 -16.03300 -15.69811 -15.21874 -15.11109 -14.95056 -14.71223 -14.60751 -14.40642 -14.05396 -13.80624 -13.79236 -13.04516 -12.99280 -12.49163 -12.42036 -12.21748 -12.12604 -11.99250 -11.97212 -11.81336 -11.57019 -11.25224 -11.19023 -11.03223 -10.64360 -10.42906 -10.23356 -9.56905 -8.31379 -6.33875 0.19855 1.34138 1.36772 1.50094 1.72974 1.75867 2.12475 2.24595 2.33372 3.04517 3.18948 3.72948 3.87056 4.01774 4.13840 4.15230 4.27748 4.32975 4.35727 4.50633 4.65027 4.71468 4.75883 4.77680 4.79872 4.89861 4.92747 4.95690 5.00456 5.08901 5.14489 5.29787 5.31871 5.36035 5.43575 5.47264 5.67955 5.75776 6.19947 6.27157 6.42891 6.70671 6.84482 7.05886 7.31094 8.85817 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.022860 B = 0.004310 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.541233 B = 6495.168799 C = 7358.275670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.154 4.154 4 C 0.258 3.742 5 N -0.522 5.522 6 C 0.058 3.942 7 C -0.094 4.094 8 C 0.590 3.410 9 O -0.572 6.572 10 N -0.705 5.705 11 C 0.156 3.844 12 C 0.027 3.973 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.520 4.520 16 H 0.028 0.972 17 C 0.017 3.983 18 N -0.946 5.946 19 Si 0.945 3.055 20 H -0.282 1.282 21 H -0.316 1.316 22 H -0.201 1.201 23 N -0.535 5.535 24 H 0.434 0.566 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.183 0.817 33 H 0.406 0.594 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 0.225 25.471 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.212 4.212 4 C -0.007 4.007 5 N -0.241 5.241 6 C -0.095 4.095 7 C -0.211 4.211 8 C 0.378 3.622 9 O -0.451 6.451 10 N -0.357 5.357 11 C 0.033 3.967 12 C 0.026 3.974 13 C -0.199 4.199 14 C -0.204 4.204 15 C -0.558 4.558 16 H 0.046 0.954 17 C -0.181 4.181 18 N -0.585 5.585 19 Si 0.774 3.226 20 H -0.209 1.209 21 H -0.245 1.245 22 H -0.125 1.125 23 N -0.141 5.141 24 H 0.276 0.724 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.243 0.757 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.772 -0.909 25.456 26.118 hybrid contribution 0.198 1.630 -1.525 2.240 sum -5.574 0.721 23.932 24.583 Atomic orbital electron populations 1.21858 0.92105 1.02507 1.03658 1.19929 0.96974 0.95831 0.90581 1.21959 1.01566 0.93323 1.04326 1.24072 0.98913 0.89618 0.88100 1.70205 1.19542 1.13418 1.20945 1.22789 0.99740 0.98374 0.88643 1.20841 1.16195 0.92111 0.91927 1.17123 0.77445 0.83041 0.84626 1.90826 1.48397 1.39913 1.65996 1.45893 1.66535 1.11228 1.12004 1.21143 0.99119 0.97509 0.78944 1.18665 0.93879 0.91111 0.93719 1.22232 0.96417 1.01009 1.00232 1.22303 1.00333 0.98462 0.99335 1.21011 1.45173 0.95564 0.94068 0.95391 1.25878 0.93927 1.02737 0.95549 1.70116 1.51537 1.26134 1.10712 0.86334 0.78945 0.77521 0.79802 1.20896 1.24519 1.12472 1.43088 1.49335 1.12621 1.09092 0.72427 0.92380 0.89039 0.93017 0.87175 0.88883 0.92376 0.91739 0.80004 0.75704 0.93369 0.93569 0.91591 0.93396 0.94033 0.93409 0.94456 0.90878 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 71.98 0.66 -0.63 16 2 C -0.01 -0.14 3.39 -11.54 -0.04 -0.18 16 3 C -0.15 -1.04 8.93 71.98 0.64 -0.40 16 4 C 0.26 4.80 6.85 138.20 0.95 5.74 16 5 N -0.52 -13.03 11.20 -187.39 -2.10 -15.12 16 6 C 0.06 1.58 11.66 84.10 0.98 2.56 16 7 C -0.09 -2.46 7.08 40.01 0.28 -2.17 16 8 C 0.59 18.96 7.79 86.47 0.67 19.63 16 9 O -0.57 -23.26 16.90 -4.27 -0.07 -23.33 16 10 N -0.71 -20.85 5.00 -466.98 -2.33 -23.18 16 11 C 0.16 6.03 4.49 86.38 0.39 6.42 16 12 C 0.03 1.11 0.50 -52.93 -0.03 1.08 16 13 C -0.14 -5.04 7.53 71.98 0.54 -4.50 16 14 C -0.15 -5.18 7.52 71.98 0.54 -4.64 16 15 C -0.52 -28.03 8.62 25.60 0.22 -27.81 16 16 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 17 C 0.02 0.92 5.32 84.65 0.45 1.37 16 18 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 19 Si 0.94 41.14 22.79 68.60 1.56 42.70 16 20 H -0.28 -12.04 7.10 99.48 0.71 -11.34 16 21 H -0.32 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.20 -7.17 4.65 99.48 0.46 -6.71 16 23 N -0.54 -9.66 5.83 -176.11 -1.03 -10.68 16 24 H 0.43 5.08 7.48 -92.71 -0.69 4.39 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.33 7.40 -2.39 -0.02 0.32 16 32 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.41 9.09 5.50 -92.71 -0.51 8.58 16 34 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.72 7.13 -2.39 -0.02 1.70 16 37 H 0.05 1.81 4.30 -2.39 -0.01 1.80 16 38 H 0.04 1.53 8.12 -2.38 -0.02 1.51 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.37 2.25 -2.38 -0.01 1.36 16 41 H 0.07 1.87 6.86 -2.39 -0.02 1.85 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.00 330.05 2.19 -70.82 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.41 Total: 19.90 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 6.26 Total: -3.52 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -5.16 Total: -106.57 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.07 Total: -23.33 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.56 Total: 42.70 kcal Total: -73.00 2.19 -70.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325207916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.497 kcal (2) G-P(sol) polarization free energy of solvation -73.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds