Wall clock time and date at job start Tue Mar 31 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.08999 * 109.47268 * 305.00074 * 3 2 1 5 5 C 1.52999 * 109.46973 * 65.00226 * 3 2 1 6 6 N 1.46497 * 109.46689 * 184.99957 * 3 2 1 7 7 N 1.28442 * 125.19500 * 294.89774 * 6 3 2 8 8 C 1.30866 * 110.92834 * 180.31341 * 7 6 3 9 9 C 1.39677 * 107.86189 * 359.71431 * 8 7 6 10 10 C 1.36607 * 125.18613 * 114.72695 * 6 3 2 11 11 C 1.47157 * 126.88585 * 359.96436 * 10 6 3 12 12 O 1.21630 * 119.99770 * 348.78277 * 11 10 6 13 13 N 1.34775 * 120.00196 * 168.78912 * 11 10 6 14 14 C 1.46502 * 119.99966 * 0.34913 * 13 11 10 15 15 C 1.46498 * 120.00191 * 180.34865 * 13 11 10 16 16 H 1.08998 * 109.47179 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47278 * 119.99974 * 15 13 11 18 18 C 1.50707 * 109.47000 * 239.99949 * 15 13 11 19 19 H 1.07993 * 119.99898 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99372 * 179.97438 * 18 15 13 21 21 N 1.31507 * 120.00392 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99261 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47473 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47077 * 120.00257 * 22 20 18 25 25 H 1.48506 * 109.47280 * 239.99945 * 22 20 18 26 26 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47074 * 300.00263 * 1 2 3 28 28 H 1.09004 * 109.47519 * 59.99346 * 1 2 3 29 29 H 1.08999 * 109.46862 * 240.00487 * 2 1 3 30 30 H 1.08992 * 109.46982 * 120.00261 * 2 1 3 31 31 H 1.08999 * 109.47248 * 59.99836 * 5 3 2 32 32 H 1.08999 * 109.47062 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47156 * 299.99914 * 5 3 2 34 34 H 1.08000 * 126.07143 * 179.67573 * 8 7 6 35 35 H 1.07997 * 127.32086 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47408 * 83.24037 * 14 13 11 37 37 H 1.08999 * 109.46924 * 203.24537 * 14 13 11 38 38 H 1.09004 * 109.47033 * 323.23872 * 14 13 11 39 39 H 1.08997 * 109.46807 * 59.99852 * 17 15 13 40 40 H 1.08995 * 109.46890 * 180.02562 * 17 15 13 41 41 H 1.09003 * 109.46879 * 300.00138 * 17 15 13 42 42 H 0.97000 * 119.99471 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3155 0.9757 0.7544 8 6 5.5558 1.1273 0.3657 9 6 5.5399 1.7491 -0.8849 10 6 4.2018 1.9414 -1.1817 11 6 3.6466 2.5626 -2.3947 12 8 2.4537 2.4928 -2.6222 13 7 4.4597 3.2086 -3.2537 14 6 5.8976 3.2859 -2.9837 15 6 3.9059 3.8336 -4.4573 16 1 2.8283 3.6725 -4.4874 17 6 4.1970 5.3355 -4.4323 18 6 4.5393 3.2194 -5.6791 19 1 5.2800 2.4411 -5.5699 20 6 4.1724 3.6505 -6.9363 21 7 3.2701 4.5979 -7.0693 22 14 4.9581 2.8897 -8.4507 23 1 5.9360 1.8530 -8.0332 24 1 3.9064 2.2664 -9.2938 25 1 5.6560 3.9443 -9.2291 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0699 1.5875 2.1492 32 1 1.9990 3.1540 1.3076 33 1 0.5489 2.1252 1.3970 34 1 6.4357 0.8258 0.9147 35 1 6.3909 2.0223 -1.4912 36 1 6.3822 2.3737 -3.3317 37 1 6.3198 4.1440 -3.5066 38 1 6.0605 3.3976 -1.9117 39 1 5.2747 5.4961 -4.4025 40 1 3.7846 5.8005 -5.3276 41 1 3.7389 5.7797 -3.5486 42 1 3.0123 4.9013 -7.9538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338413992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:24 Heat of formation + Delta-G solvation = 51.991285 kcal Electronic energy + Delta-G solvation = -22729.804362 eV Core-core repulsion = 19519.421804 eV Total energy + Delta-G solvation = -3210.382558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.34631 -38.83843 -36.53203 -35.38557 -33.11851 -31.45000 -30.91778 -29.00878 -28.80671 -26.54478 -25.26823 -24.83212 -23.08509 -22.07827 -21.03048 -19.67662 -18.70937 -16.87063 -16.36967 -15.98824 -15.67199 -15.26399 -15.09262 -14.54200 -14.25910 -14.07653 -13.66481 -13.44973 -12.83378 -12.74891 -12.46917 -12.44071 -12.30486 -11.84694 -11.75513 -11.60557 -11.31469 -11.08602 -10.98974 -10.88668 -10.80272 -10.71361 -10.29269 -10.25561 -10.18022 -9.25577 -9.14701 -8.93178 -8.70298 -8.47565 -7.69917 -6.11602 -4.19581 1.67495 2.62480 2.86440 3.24140 3.32391 3.35609 3.76468 3.85226 4.36889 4.54412 4.79777 4.93996 4.98615 5.15237 5.20241 5.32796 5.33974 5.39446 5.49143 5.69589 5.71240 5.74637 5.84725 5.88434 5.96223 5.99090 6.03430 6.19146 6.23685 6.27802 6.70662 6.73000 6.77933 6.98450 7.02624 7.33291 7.42984 7.66273 7.94931 8.11941 8.30297 8.41879 8.74443 8.91603 9.47021 10.93869 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.004889 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.130356 B = 5725.784173 C = 6219.334509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.132 3.868 4 H 0.136 0.864 5 C -0.158 4.158 6 N -0.254 5.254 7 N -0.286 5.286 8 C -0.014 4.014 9 C -0.215 4.215 10 C -0.021 4.021 11 C 0.573 3.427 12 O -0.554 6.554 13 N -0.569 5.569 14 C 0.066 3.934 15 C 0.258 3.742 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.526 4.526 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.096 0.904 41 H 0.012 0.988 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -4.545 14.038 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.032 3.968 4 H 0.154 0.846 5 C -0.216 4.216 6 N -0.042 5.042 7 N -0.118 5.118 8 C -0.190 4.190 9 C -0.243 4.243 10 C -0.149 4.149 11 C 0.359 3.641 12 O -0.435 6.435 13 N -0.299 5.299 14 C -0.078 4.078 15 C 0.159 3.841 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.047 -4.850 14.618 15.402 hybrid contribution 1.170 -0.128 -1.554 1.950 sum 1.123 -4.978 13.064 14.025 Atomic orbital electron populations 1.21778 0.94242 1.02219 1.02513 1.21795 0.96837 0.94727 1.03105 1.22099 0.73282 0.99149 1.02272 0.84647 1.22132 1.02300 1.00853 0.96294 1.45904 1.07240 1.39890 1.11171 1.73026 1.01475 1.18852 1.18479 1.23535 0.94327 1.04385 0.96739 1.23053 0.95857 1.06435 0.98937 1.21799 0.92222 1.07285 0.93617 1.16973 0.86135 0.79274 0.81726 1.90675 1.15066 1.61756 1.76007 1.47991 1.07165 1.51446 1.23287 1.22294 0.82168 1.02491 1.00817 1.19061 0.96625 0.89209 0.79234 0.91650 1.22110 0.99165 0.98250 1.01060 1.21340 1.24068 1.20851 0.90160 0.92085 1.24886 0.94942 0.94943 0.98962 1.69882 1.30950 1.28321 1.23425 0.86421 0.79181 0.79107 0.82581 1.19760 1.20906 1.20884 0.92162 0.92236 0.91815 0.91321 0.91040 0.91272 0.92154 0.90268 0.80241 0.80637 0.92728 0.90426 0.90886 0.94897 0.88596 0.96879 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.13 -1.63 5.66 -26.73 -0.15 -1.79 16 3 C 0.13 1.95 2.97 -67.93 -0.20 1.75 16 4 H 0.14 2.33 5.49 -51.93 -0.28 2.04 16 5 C -0.16 -1.90 9.06 37.16 0.34 -1.56 16 6 N -0.25 -4.22 3.09 -50.69 -0.16 -4.38 16 7 N -0.29 -4.46 11.52 30.59 0.35 -4.10 16 8 C -0.01 -0.19 12.03 -17.43 -0.21 -0.40 16 9 C -0.21 -3.20 8.85 -38.98 -0.34 -3.55 16 10 C -0.02 -0.37 6.78 -82.06 -0.56 -0.93 16 11 C 0.57 12.28 7.64 -12.64 -0.10 12.18 16 12 O -0.55 -13.32 13.81 5.25 0.07 -13.24 16 13 N -0.57 -12.18 2.75 -176.63 -0.49 -12.67 16 14 C 0.07 1.10 7.93 59.85 0.47 1.57 16 15 C 0.26 6.49 2.62 -69.08 -0.18 6.31 16 16 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 17 C -0.15 -3.45 8.96 37.16 0.33 -3.12 16 18 C -0.53 -13.99 8.37 -34.44 -0.29 -14.28 16 19 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -24.68 11.32 55.43 0.63 -24.06 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.77 6.56 -51.93 -0.34 0.43 16 34 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.18 2.22 4.67 -52.49 -0.25 1.98 16 36 H 0.05 0.86 7.61 -51.93 -0.40 0.46 16 37 H 0.08 1.30 6.45 -51.93 -0.33 0.96 16 38 H 0.07 1.03 4.96 -51.93 -0.26 0.77 16 39 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 40 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -30.64 332.10 -6.36 -37.00 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.13 Total: 4.04 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.62 Total: -3.36 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.34 Total: -45.21 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.64 -6.36 -37.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338413992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.989 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds