Wall clock time and date at job start Tue Mar 31 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.08999 * 109.47268 * 305.00074 * 3 2 1 5 5 C 1.52999 * 109.46973 * 65.00226 * 3 2 1 6 6 N 1.46497 * 109.46689 * 184.99957 * 3 2 1 7 7 N 1.28442 * 125.19500 * 294.89774 * 6 3 2 8 8 C 1.30866 * 110.92834 * 180.31341 * 7 6 3 9 9 C 1.39677 * 107.86189 * 359.71431 * 8 7 6 10 10 C 1.36607 * 125.18613 * 114.72695 * 6 3 2 11 11 C 1.47157 * 126.88585 * 359.96436 * 10 6 3 12 12 O 1.21630 * 119.99770 * 348.78277 * 11 10 6 13 13 N 1.34775 * 120.00196 * 168.78912 * 11 10 6 14 14 C 1.46502 * 119.99966 * 0.34913 * 13 11 10 15 15 C 1.46498 * 120.00191 * 180.34865 * 13 11 10 16 16 H 1.08998 * 109.47179 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47278 * 119.99974 * 15 13 11 18 18 C 1.50707 * 109.47000 * 239.99949 * 15 13 11 19 19 H 1.07993 * 119.99898 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99372 * 179.97438 * 18 15 13 21 21 N 1.31507 * 120.00392 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99261 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47473 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47077 * 120.00257 * 22 20 18 25 25 H 1.48506 * 109.47280 * 239.99945 * 22 20 18 26 26 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47074 * 300.00263 * 1 2 3 28 28 H 1.09004 * 109.47519 * 59.99346 * 1 2 3 29 29 H 1.08999 * 109.46862 * 240.00487 * 2 1 3 30 30 H 1.08992 * 109.46982 * 120.00261 * 2 1 3 31 31 H 1.08999 * 109.47248 * 59.99836 * 5 3 2 32 32 H 1.08999 * 109.47062 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47156 * 299.99914 * 5 3 2 34 34 H 1.08000 * 126.07143 * 179.67573 * 8 7 6 35 35 H 1.07997 * 127.32086 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47408 * 83.24037 * 14 13 11 37 37 H 1.08999 * 109.46924 * 203.24537 * 14 13 11 38 38 H 1.09004 * 109.47033 * 323.23872 * 14 13 11 39 39 H 1.08997 * 109.46807 * 59.99852 * 17 15 13 40 40 H 1.08995 * 109.46890 * 180.02562 * 17 15 13 41 41 H 1.09003 * 109.46879 * 300.00138 * 17 15 13 42 42 H 0.97000 * 119.99471 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3155 0.9757 0.7544 8 6 5.5558 1.1273 0.3657 9 6 5.5399 1.7491 -0.8849 10 6 4.2018 1.9414 -1.1817 11 6 3.6466 2.5626 -2.3947 12 8 2.4537 2.4928 -2.6222 13 7 4.4597 3.2086 -3.2537 14 6 5.8976 3.2859 -2.9837 15 6 3.9059 3.8336 -4.4573 16 1 2.8283 3.6725 -4.4874 17 6 4.1970 5.3355 -4.4323 18 6 4.5393 3.2194 -5.6791 19 1 5.2800 2.4411 -5.5699 20 6 4.1724 3.6505 -6.9363 21 7 3.2701 4.5979 -7.0693 22 14 4.9581 2.8897 -8.4507 23 1 5.9360 1.8530 -8.0332 24 1 3.9064 2.2664 -9.2938 25 1 5.6560 3.9443 -9.2291 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0699 1.5875 2.1492 32 1 1.9990 3.1540 1.3076 33 1 0.5489 2.1252 1.3970 34 1 6.4357 0.8258 0.9147 35 1 6.3909 2.0223 -1.4912 36 1 6.3822 2.3737 -3.3317 37 1 6.3198 4.1440 -3.5066 38 1 6.0605 3.3976 -1.9117 39 1 5.2747 5.4961 -4.4025 40 1 3.7846 5.8005 -5.3276 41 1 3.7389 5.7797 -3.5486 42 1 3.0123 4.9013 -7.9538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338413992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:23 Heat of formation + Delta-G solvation = 33.572668 kcal Electronic energy + Delta-G solvation = -22730.603053 eV Core-core repulsion = 19519.421804 eV Total energy + Delta-G solvation = -3211.181249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.56843 -40.49784 -37.73394 -37.03139 -34.98597 -32.68013 -32.39239 -30.54180 -29.96343 -28.00310 -27.31253 -25.87640 -24.64452 -23.20140 -22.42499 -21.23779 -20.02716 -18.58834 -18.02170 -17.61146 -17.01094 -16.88146 -16.19601 -16.11542 -15.81063 -15.30970 -15.03119 -14.65168 -14.48731 -14.08410 -13.98967 -13.64940 -13.52074 -13.24015 -13.03615 -12.90328 -12.80339 -12.74803 -12.69329 -12.41395 -12.19474 -12.13559 -12.03952 -11.83820 -11.44214 -11.19994 -10.83000 -10.52942 -10.18499 -9.92006 -9.41370 -8.16083 -6.32377 0.31378 1.39490 1.41330 1.44178 1.54773 1.73666 2.21494 2.28744 2.46627 3.12573 3.44923 3.51058 3.75330 3.95378 4.10349 4.22491 4.35398 4.36331 4.39413 4.51711 4.56161 4.69275 4.72750 4.76107 4.86799 4.87634 4.89632 4.92938 5.00426 5.01322 5.03926 5.19279 5.29708 5.43034 5.54694 5.63289 5.64039 5.84825 5.98908 6.12567 6.65594 6.74004 7.11424 7.20742 7.40479 8.88756 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.004889 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.130356 B = 5725.784173 C = 6219.334509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.124 3.876 4 H 0.104 0.896 5 C -0.148 4.148 6 N -0.261 5.261 7 N -0.290 5.290 8 C -0.006 4.006 9 C -0.197 4.197 10 C -0.057 4.057 11 C 0.565 3.435 12 O -0.596 6.596 13 N -0.577 5.577 14 C 0.062 3.938 15 C 0.263 3.737 16 H 0.013 0.987 17 C -0.133 4.133 18 C -0.538 4.538 19 H 0.061 0.939 20 C 0.017 3.983 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.224 0.776 35 H 0.201 0.799 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -5.538 15.568 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.122 0.878 5 C -0.205 4.205 6 N -0.049 5.049 7 N -0.123 5.123 8 C -0.181 4.181 9 C -0.226 4.226 10 C -0.185 4.185 11 C 0.353 3.647 12 O -0.480 6.480 13 N -0.306 5.306 14 C -0.080 4.080 15 C 0.162 3.838 16 H 0.031 0.969 17 C -0.192 4.192 18 C -0.576 4.576 19 H 0.079 0.921 20 C -0.183 4.183 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.240 0.760 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.102 -5.841 16.169 17.320 hybrid contribution 0.511 0.155 -1.969 2.040 sum 2.614 -5.687 14.199 15.518 Atomic orbital electron populations 1.21774 0.92437 1.03339 1.02767 1.21745 0.98363 0.93344 1.02223 1.22173 0.72896 1.00114 1.02458 0.87841 1.22087 1.03805 0.99860 0.94793 1.46085 1.07829 1.40008 1.10966 1.73041 1.02284 1.18670 1.18256 1.24258 0.94846 1.02811 0.96200 1.23392 0.94943 1.04848 0.99370 1.21508 0.93775 1.09828 0.93362 1.17476 0.85689 0.78891 0.82688 1.90649 1.16958 1.63206 1.77152 1.47941 1.09136 1.51289 1.22240 1.22575 0.79238 1.03220 1.02923 1.18662 0.93870 0.90496 0.80789 0.96884 1.21898 1.00198 0.96911 1.00146 1.21567 1.24092 1.20954 0.90990 0.92060 1.25707 0.95367 0.95329 1.01864 1.70018 1.32012 1.29389 1.24119 0.85400 0.78227 0.78512 0.78825 1.18941 1.21256 1.19844 0.90610 0.90117 0.93397 0.93914 0.89953 0.90452 0.93180 0.87978 0.75951 0.78281 0.91390 0.90343 0.87815 0.92975 0.91057 0.96129 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 71.98 0.70 -2.28 16 2 C -0.12 -3.06 5.66 30.60 0.17 -2.89 16 3 C 0.12 3.71 2.97 44.99 0.13 3.84 16 4 H 0.10 3.81 5.49 -2.39 -0.01 3.79 16 5 C -0.15 -3.41 9.06 71.98 0.65 -2.76 16 6 N -0.26 -8.52 3.09 -314.29 -0.97 -9.49 16 7 N -0.29 -8.38 11.52 -57.14 -0.66 -9.04 16 8 C -0.01 -0.13 12.03 85.18 1.02 0.89 16 9 C -0.20 -5.33 8.85 22.66 0.20 -5.13 16 10 C -0.06 -2.03 6.78 40.78 0.28 -1.75 16 11 C 0.56 24.99 7.64 86.59 0.66 25.65 16 12 O -0.60 -30.65 13.81 -4.13 -0.06 -30.71 16 13 N -0.58 -25.02 2.75 -830.97 -2.29 -27.31 16 14 C 0.06 1.96 7.93 127.77 1.01 2.97 16 15 C 0.26 13.69 2.62 44.25 0.12 13.80 16 16 H 0.01 0.82 6.90 -2.39 -0.02 0.80 16 17 C -0.13 -6.35 8.96 71.98 0.65 -5.71 16 18 C -0.54 -29.03 8.37 25.60 0.21 -28.81 16 19 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 20 C 0.02 0.93 5.30 84.66 0.45 1.38 16 21 N -0.92 -52.27 11.32 21.45 0.24 -52.02 16 22 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.30 6.56 -2.39 -0.02 1.28 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.83 6.56 -2.39 -0.02 1.81 16 34 H 0.22 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.20 4.26 4.67 -2.91 -0.01 4.25 16 36 H 0.07 1.97 7.61 -2.39 -0.02 1.95 16 37 H 0.08 2.47 6.45 -2.39 -0.02 2.45 16 38 H 0.10 2.62 4.96 -2.38 -0.01 2.61 16 39 H 0.05 2.23 6.67 -2.39 -0.02 2.21 16 40 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -69.61 332.10 5.57 -64.04 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.02 Total: 20.58 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.26 Total: -0.79 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -3.67 Total: -97.86 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.06 Total: -30.71 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -69.61 5.57 -64.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338413992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.613 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds