Wall clock time and date at job start Tue Mar 31 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99856 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00413 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47033 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47033 * 299.99720 * 13 12 11 15 15 C 1.52994 * 109.47483 * 60.00018 * 13 12 11 16 16 C 1.50706 * 109.46905 * 180.02562 * 13 12 11 17 17 H 1.08001 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00321 * 179.97438 * 16 13 12 19 19 N 1.31519 * 119.99727 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00434 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46985 * 59.99882 * 20 18 16 22 22 H 1.48499 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46924 * 299.99693 * 20 18 16 24 24 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 25 25 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 26 26 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 27 27 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 28 28 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 29 29 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 30 30 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 31 31 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 32 32 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 33 33 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.46998 * 300.00241 * 12 11 9 35 35 H 1.09004 * 109.47124 * 60.00004 * 12 11 9 36 36 H 1.09000 * 109.46632 * 60.00322 * 14 13 12 37 37 H 1.09000 * 109.46647 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.47185 * 300.00293 * 14 13 12 39 39 H 1.09002 * 109.47033 * 59.99721 * 15 13 12 40 40 H 1.09000 * 109.47401 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47207 * 300.00305 * 15 13 12 42 42 H 0.96993 * 120.00286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 8 1.0255 -5.0332 0.3901 11 7 1.1905 -5.1574 2.5989 12 6 0.7408 -6.5516 2.5990 13 6 0.7048 -7.0758 4.0359 14 6 2.1061 -6.9919 4.6447 15 6 -0.2626 -6.2280 4.8641 16 6 0.2429 -8.5103 4.0359 17 1 -0.0011 -8.9990 3.1042 18 6 0.1316 -9.1988 5.2252 19 7 0.4292 -8.6039 6.3597 20 14 -0.4417 -10.9766 5.2252 21 1 0.4970 -11.7994 4.4208 22 1 -0.4753 -11.4859 6.6197 23 1 -1.8019 -11.0580 4.6351 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4053 1.3713 0.0112 28 1 4.4212 -1.2961 -0.0013 29 1 0.7995 -2.5863 -0.4346 30 1 2.4874 -3.1293 -0.5903 31 1 2.7594 -2.9894 1.8704 32 1 1.0715 -2.4464 2.0262 33 1 1.4092 -4.7183 3.4358 34 1 -0.2576 -6.6114 2.1656 35 1 1.4299 -7.1557 2.0086 36 1 2.4406 -5.9545 4.6446 37 1 2.0804 -7.3658 5.6682 38 1 2.7953 -7.5960 4.0546 39 1 -1.2609 -6.2878 4.4304 40 1 -0.2886 -6.6017 5.8877 41 1 0.0719 -5.1906 4.8640 42 1 0.3513 -9.0883 7.1964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535410944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:56 Heat of formation + Delta-G solvation = 23.040543 kcal Electronic energy + Delta-G solvation = -21486.513824 eV Core-core repulsion = 18274.875868 eV Total energy + Delta-G solvation = -3211.637956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.38867 -39.36472 -36.48259 -34.16388 -33.31934 -33.09318 -30.95528 -29.40330 -26.90505 -25.98541 -25.76409 -25.25910 -23.71990 -21.28886 -20.14758 -19.71457 -18.80782 -17.32369 -16.45031 -15.84124 -15.60706 -15.55899 -15.04784 -14.67886 -14.47501 -14.08049 -13.60212 -13.35145 -13.06448 -12.89764 -12.64811 -12.61241 -12.36292 -12.20437 -12.07349 -11.42810 -11.24330 -11.21581 -10.87211 -10.76017 -10.74609 -10.42000 -10.23562 -9.67159 -9.66953 -9.44290 -9.25270 -8.83063 -8.64763 -8.49220 -8.34987 -6.04927 -4.15334 1.69746 2.35825 2.69004 2.98326 3.27967 3.32516 3.35651 3.67851 4.36835 4.38849 4.50153 4.81279 4.84321 4.95343 4.99981 5.18908 5.21786 5.24170 5.38856 5.51147 5.61902 5.67181 5.90295 6.08554 6.19589 6.28823 6.47022 6.50968 6.73581 6.78588 6.84362 6.89259 6.97906 6.98820 7.31612 7.52050 7.56049 7.66308 7.97581 8.00171 8.11621 8.35177 8.63880 8.85286 9.50710 10.96458 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.002926 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.279291 B = 9568.347055 C = 9634.130176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.304 5.304 4 C 0.045 3.955 5 C -0.274 4.274 6 C 0.091 3.909 7 C -0.041 4.041 8 C -0.135 4.135 9 C 0.504 3.496 10 O -0.555 6.555 11 N -0.716 5.716 12 C 0.131 3.869 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.182 0.818 28 H 0.148 0.852 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 15.312 -8.085 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.155 5.155 3 N -0.125 5.125 4 C -0.140 4.140 5 C -0.303 4.303 6 C -0.037 4.037 7 C -0.081 4.081 8 C -0.176 4.176 9 C 0.289 3.711 10 O -0.434 6.434 11 N -0.366 5.366 12 C 0.009 3.991 13 C 0.056 3.944 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.199 0.801 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.234 0.766 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.097 15.874 -8.618 18.183 hybrid contribution 0.341 -1.413 0.532 1.548 sum 2.438 14.461 -8.086 16.747 Atomic orbital electron populations 1.21887 0.74450 1.04535 1.03599 1.48517 1.06544 1.03447 1.56971 1.77349 1.01914 1.08011 1.25218 1.23824 0.95185 0.95141 0.99861 1.21284 0.96375 0.95001 1.17654 1.21172 0.91338 0.90439 1.00724 1.19985 1.03562 0.87582 0.96942 1.21609 1.03947 0.94152 0.97866 1.20453 0.78206 0.88124 0.84272 1.90676 1.50899 1.70265 1.31535 1.46337 1.66838 1.15100 1.08353 1.21724 0.98236 0.78561 1.00606 1.18349 0.93168 0.95016 0.87915 1.21836 0.96779 0.96044 1.04226 1.21832 0.97788 0.94971 1.04264 1.20953 1.44957 0.95637 0.93088 0.92493 1.24877 0.95011 0.98080 0.95505 1.69789 1.48568 1.36472 0.97645 0.86628 0.79354 0.84916 0.76940 1.20261 1.21309 1.20279 0.90575 0.89328 0.89257 0.80106 0.83467 0.89936 0.88264 0.88445 0.89312 0.76649 0.92756 0.92685 0.97486 0.89583 0.95425 0.95476 0.89588 0.97520 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.27 59.85 0.67 1.43 16 2 N -0.37 -4.18 4.01 -63.89 -0.26 -4.43 16 3 N -0.30 -3.78 12.58 30.63 0.39 -3.40 16 4 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 5 C -0.27 -2.89 10.72 -40.01 -0.43 -3.32 16 6 C 0.09 1.00 6.19 -82.27 -0.51 0.49 16 7 C -0.04 -0.44 4.79 -27.88 -0.13 -0.58 16 8 C -0.13 -1.49 5.68 -27.88 -0.16 -1.65 16 9 C 0.50 7.88 7.83 -10.99 -0.09 7.79 16 10 O -0.55 -10.63 15.98 5.56 0.09 -10.54 16 11 N -0.72 -11.95 4.96 -60.29 -0.30 -12.25 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.68 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 14 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 15 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 16 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.33 9.35 55.43 0.52 -22.81 16 20 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.58 6.98 -51.92 -0.36 0.22 16 27 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 30 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 6.00 6.16 -40.82 -0.25 5.75 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 37 H 0.09 2.11 6.07 -51.93 -0.31 1.79 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -30.29 341.87 -6.65 -36.94 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.50 Total: 4.48 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.71 Total: -8.61 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.35 Total: -42.90 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.29 -6.65 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535410944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.986 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds