Wall clock time and date at job start Tue Mar 31 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99856 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00413 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47033 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47033 * 299.99720 * 13 12 11 15 15 C 1.52994 * 109.47483 * 60.00018 * 13 12 11 16 16 C 1.50706 * 109.46905 * 180.02562 * 13 12 11 17 17 H 1.08001 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00321 * 179.97438 * 16 13 12 19 19 N 1.31519 * 119.99727 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00434 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46985 * 59.99882 * 20 18 16 22 22 H 1.48499 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46924 * 299.99693 * 20 18 16 24 24 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 25 25 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 26 26 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 27 27 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 28 28 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 29 29 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 30 30 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 31 31 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 32 32 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 33 33 H 0.97005 * 119.99960 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.46998 * 300.00241 * 12 11 9 35 35 H 1.09004 * 109.47124 * 60.00004 * 12 11 9 36 36 H 1.09000 * 109.46632 * 60.00322 * 14 13 12 37 37 H 1.09000 * 109.46647 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.47185 * 300.00293 * 14 13 12 39 39 H 1.09002 * 109.47033 * 59.99721 * 15 13 12 40 40 H 1.09000 * 109.47401 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47207 * 300.00305 * 15 13 12 42 42 H 0.96993 * 120.00286 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 8 1.0255 -5.0332 0.3901 11 7 1.1905 -5.1574 2.5989 12 6 0.7408 -6.5516 2.5990 13 6 0.7048 -7.0758 4.0359 14 6 2.1061 -6.9919 4.6447 15 6 -0.2626 -6.2280 4.8641 16 6 0.2429 -8.5103 4.0359 17 1 -0.0011 -8.9990 3.1042 18 6 0.1316 -9.1988 5.2252 19 7 0.4292 -8.6039 6.3597 20 14 -0.4417 -10.9766 5.2252 21 1 0.4970 -11.7994 4.4208 22 1 -0.4753 -11.4859 6.6197 23 1 -1.8019 -11.0580 4.6351 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 4.4053 1.3713 0.0112 28 1 4.4212 -1.2961 -0.0013 29 1 0.7995 -2.5863 -0.4346 30 1 2.4874 -3.1293 -0.5903 31 1 2.7594 -2.9894 1.8704 32 1 1.0715 -2.4464 2.0262 33 1 1.4092 -4.7183 3.4358 34 1 -0.2576 -6.6114 2.1656 35 1 1.4299 -7.1557 2.0086 36 1 2.4406 -5.9545 4.6446 37 1 2.0804 -7.3658 5.6682 38 1 2.7953 -7.5960 4.0546 39 1 -1.2609 -6.2878 4.4304 40 1 -0.2886 -6.6017 5.8877 41 1 0.0719 -5.1906 4.8640 42 1 0.3513 -9.0883 7.1964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535410944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:55 Heat of formation + Delta-G solvation = 4.691120 kcal Electronic energy + Delta-G solvation = -21487.309515 eV Core-core repulsion = 18274.875868 eV Total energy + Delta-G solvation = -3212.433647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17335 -40.70866 -38.15899 -35.07584 -34.95503 -33.85354 -32.71219 -30.34779 -27.61078 -27.54816 -27.49949 -27.00076 -24.93936 -22.05350 -21.43064 -20.62459 -20.46741 -18.49506 -17.74230 -17.32452 -16.72728 -16.67232 -16.50423 -16.12450 -15.38825 -15.17526 -14.80940 -14.62088 -14.58117 -14.01744 -13.89306 -13.68302 -13.32424 -13.19774 -13.13400 -13.09664 -12.94074 -12.65448 -12.61953 -12.24113 -12.13092 -12.09802 -11.55342 -11.46725 -11.26089 -10.85174 -10.67516 -10.38893 -10.20330 -9.89525 -9.44026 -8.01863 -6.17717 0.89849 1.44119 1.45644 1.51850 1.66035 1.73844 1.91325 2.36945 2.52603 3.21786 3.56897 3.74793 3.93541 4.00459 4.20090 4.37543 4.39594 4.47903 4.52881 4.58482 4.65610 4.68963 4.74065 4.85795 4.92662 5.02723 5.07432 5.07636 5.13219 5.21257 5.31023 5.39739 5.62884 5.67818 5.68700 5.78284 6.11081 6.17047 6.23518 6.44513 6.71459 6.78147 6.87065 7.36680 7.50228 8.96662 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.002926 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.279291 B = 9568.347055 C = 9634.130176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.380 5.380 3 N -0.336 5.336 4 C 0.041 3.959 5 C -0.282 4.282 6 C 0.085 3.915 7 C -0.034 4.034 8 C -0.121 4.121 9 C 0.506 3.494 10 O -0.591 6.591 11 N -0.712 5.712 12 C 0.148 3.852 13 C 0.051 3.949 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.531 4.531 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.943 3.057 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.277 1.277 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.208 0.792 28 H 0.163 0.837 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.409 0.591 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 16.560 -8.067 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.162 5.162 3 N -0.158 5.158 4 C -0.143 4.143 5 C -0.311 4.311 6 C -0.043 4.043 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.294 3.706 10 O -0.473 6.473 11 N -0.363 5.363 12 C 0.024 3.976 13 C 0.051 3.949 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.569 4.569 17 H 0.063 0.937 18 C -0.171 4.171 19 N -0.538 5.538 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.203 1.203 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.225 0.775 28 H 0.180 0.820 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.619 17.147 -8.590 19.356 hybrid contribution 0.183 -1.780 0.486 1.854 sum 2.802 15.368 -8.104 17.598 Atomic orbital electron populations 1.22129 0.73081 1.05460 1.04573 1.48787 1.07516 1.03160 1.56784 1.77308 1.02908 1.09086 1.26513 1.24334 0.95495 0.95689 0.98796 1.21592 0.96840 0.95327 1.17328 1.21219 0.91691 0.90344 1.01094 1.19875 1.03378 0.87446 0.96602 1.21561 1.05307 0.90589 0.98626 1.21199 0.76836 0.89567 0.83039 1.90668 1.52311 1.71493 1.32794 1.46173 1.67057 1.13614 1.09505 1.21237 0.97040 0.80638 0.98727 1.18347 0.93568 0.93764 0.89263 1.21679 0.96229 0.97776 1.02245 1.21672 0.97291 0.96619 1.02300 1.21283 1.45331 0.97622 0.92697 0.93749 1.25440 0.95292 1.00992 0.95394 1.69898 1.48861 1.37285 0.97753 0.85848 0.78772 0.81476 0.76902 1.20273 1.20880 1.20261 0.89545 0.88665 0.88177 0.77516 0.81961 0.90125 0.88781 0.86389 0.87287 0.75373 0.94389 0.94397 0.94226 0.92040 0.96340 0.96338 0.92057 0.94252 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 11.27 127.77 1.44 2.66 16 2 N -0.38 -7.83 4.01 -356.04 -1.43 -9.26 16 3 N -0.34 -7.86 12.58 -57.02 -0.72 -8.57 16 4 C 0.04 0.79 12.03 85.23 1.02 1.82 16 5 C -0.28 -5.30 10.72 21.99 0.24 -5.07 16 6 C 0.08 1.68 6.19 41.41 0.26 1.93 16 7 C -0.03 -0.65 4.79 29.85 0.14 -0.50 16 8 C -0.12 -2.30 5.68 29.85 0.17 -2.13 16 9 C 0.51 14.82 7.83 87.66 0.69 15.50 16 10 O -0.59 -22.15 15.98 -3.04 -0.05 -22.20 16 11 N -0.71 -22.37 4.96 -463.06 -2.30 -24.66 16 12 C 0.15 6.00 4.50 86.38 0.39 6.39 16 13 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 14 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 15 C -0.12 -5.20 8.08 71.98 0.58 -4.61 16 16 C -0.53 -27.64 8.01 25.60 0.21 -27.43 16 17 H 0.04 2.36 7.74 -2.91 -0.02 2.33 16 18 C 0.03 1.49 5.15 84.65 0.44 1.93 16 19 N -0.90 -47.41 9.35 21.45 0.20 -47.21 16 20 Si 0.94 42.10 29.54 68.60 2.03 44.13 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.13 6.98 -2.38 -0.02 1.12 16 27 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.08 1.58 6.90 -2.39 -0.02 1.57 16 30 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 11.04 6.16 -92.70 -0.57 10.47 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 37 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 41 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 42 H 0.26 13.27 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -64.94 341.87 4.30 -60.64 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.44 Total: 19.04 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.12 Total: -11.90 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -4.24 Total: -89.70 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.94 4.30 -60.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535410944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.329 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds