Wall clock time and date at job start Tue Mar 31 2020 03:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21277 * 119.99443 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00029 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46666 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46711 * 55.00390 * 17 16 14 19 19 C 1.52995 * 109.47248 * 295.00174 * 17 16 14 20 20 C 1.50697 * 109.46667 * 174.99842 * 17 16 14 21 21 C 1.39873 * 126.03785 * 59.69589 * 20 17 16 22 22 N 1.30839 * 108.20146 * 179.81545 * 21 20 17 23 23 N 1.40081 * 108.20564 * 0.43544 * 22 21 20 24 24 C 1.46500 * 126.03879 * 179.73796 * 23 22 21 25 25 C 1.34949 * 107.92609 * 359.72418 * 23 22 21 26 26 H 1.08998 * 109.46690 * 299.99440 * 1 2 3 27 27 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47747 * 59.99615 * 1 2 3 29 29 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 30 30 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 31 31 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 33 33 H 1.09000 * 109.47346 * 300.00371 * 16 14 13 34 34 H 1.08993 * 109.47151 * 60.00582 * 16 14 13 35 35 H 1.08998 * 109.47208 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47077 * 300.00089 * 19 17 16 37 37 H 1.08996 * 109.47538 * 60.00102 * 19 17 16 38 38 H 1.08006 * 125.89816 * 359.97438 * 21 20 17 39 39 H 1.09000 * 109.47207 * 269.97825 * 24 23 22 40 40 H 1.09001 * 109.47000 * 29.98143 * 24 23 22 41 41 H 1.08998 * 109.46871 * 149.97823 * 24 23 22 42 42 H 1.08006 * 126.12947 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3902 15 8 -0.3344 2.6301 0.4665 16 6 0.0668 3.3267 2.6854 17 6 -1.3539 3.8831 2.5704 18 1 -2.0340 3.0843 2.2750 19 6 -1.3832 4.9933 1.5181 20 6 -1.7837 4.4419 3.9023 21 6 -1.1522 5.4738 4.6043 22 7 -1.8166 5.6808 5.7122 23 7 -2.8878 4.7790 5.7551 24 6 -3.8791 4.6686 6.8281 25 6 -2.8454 4.0301 4.6333 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8251 1.5986 -2.3975 32 1 2.2947 2.1150 1.9978 33 1 0.1071 2.5987 3.4956 34 1 0.7605 4.1411 2.8938 35 1 -2.3952 5.3900 1.4365 36 1 -0.7029 5.7921 1.8136 37 1 -1.0723 4.5892 0.5548 38 1 -0.2700 6.0092 4.2855 39 1 -3.5288 3.9555 7.5744 40 1 -4.0194 5.6436 7.2948 41 1 -4.8265 4.3246 6.4134 42 1 -3.5355 3.2433 4.3664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638057100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:06 Heat of formation + Delta-G solvation = 22.874742 kcal Electronic energy + Delta-G solvation = -21912.994374 eV Core-core repulsion = 18701.349228 eV Total energy + Delta-G solvation = -3211.645146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33138 -39.22090 -35.79098 -34.59823 -32.81881 -32.31800 -31.45668 -29.69410 -28.10262 -26.75488 -26.62361 -22.98484 -22.47420 -21.21989 -20.44228 -19.50507 -19.31005 -17.27194 -16.79698 -15.87234 -15.59011 -15.42610 -15.19287 -14.45789 -14.26830 -13.86741 -13.46115 -13.37030 -13.09049 -12.89288 -12.76435 -12.62556 -12.31281 -12.02237 -11.86556 -11.73690 -11.34641 -10.99299 -10.90570 -10.83838 -10.62492 -10.58491 -10.33955 -9.93705 -9.81664 -9.51895 -9.17641 -8.93861 -8.66857 -8.40294 -7.90236 -6.21212 -4.24387 1.78379 2.39700 2.74099 3.28000 3.35993 3.41860 3.43507 4.11437 4.34761 4.37476 4.72338 4.85273 4.96356 5.06339 5.09806 5.16867 5.32111 5.38245 5.63280 5.66772 5.79528 5.82427 5.90783 6.08305 6.11767 6.13249 6.26568 6.32625 6.49646 6.56829 6.68037 6.73909 6.81924 6.88627 7.03157 7.05154 7.32800 7.42381 7.59918 7.64719 8.19413 8.65613 8.80616 9.10812 9.41737 10.90670 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031059 B = 0.003649 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.288754 B = 7670.692417 C = 7810.554562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.553 6.553 16 C -0.134 4.134 17 C 0.007 3.993 18 H 0.080 0.920 19 C -0.146 4.146 20 C -0.221 4.221 21 C 0.056 3.944 22 N -0.302 5.302 23 N -0.382 5.382 24 C 0.104 3.896 25 C 0.051 3.949 26 H 0.051 0.949 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.392 0.608 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.181 0.819 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 4.530 13.377 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.286 3.714 15 O -0.433 6.433 16 C -0.175 4.175 17 C -0.013 4.013 18 H 0.098 0.902 19 C -0.203 4.203 20 C -0.232 4.232 21 C -0.130 4.130 22 N -0.123 5.123 23 N -0.165 5.165 24 C -0.038 4.038 25 C -0.094 4.094 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.198 0.802 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -17.063 5.176 13.770 22.529 hybrid contribution -0.013 -0.349 -1.085 1.140 sum -17.076 4.827 12.685 21.813 Atomic orbital electron populations 1.21897 0.97415 0.98677 1.02092 1.22068 0.93680 0.99602 1.01057 1.19125 0.95330 0.89024 0.83099 0.93172 1.21041 0.88851 1.51536 0.95382 0.90444 1.24947 0.94857 0.93746 0.98821 1.69886 1.09796 1.48543 1.24459 0.86897 0.81271 0.79617 0.82177 1.19880 1.21329 1.18332 1.46619 1.14701 1.56044 1.18043 1.20527 0.82513 0.78990 0.89368 1.90608 1.50832 1.60045 1.41790 1.21749 0.97971 1.01112 0.96630 1.19113 0.95058 0.97582 0.89562 0.90171 1.21919 1.00845 0.97373 1.00202 1.20202 0.99596 1.03001 1.00438 1.23776 0.99805 0.97525 0.91920 1.77330 0.99599 1.13558 1.21839 1.48416 1.23315 1.27830 1.16956 1.21800 0.89365 1.03923 0.88689 1.22346 1.00551 0.98349 0.88138 0.93040 0.95314 0.93116 0.93149 0.92284 0.92294 0.77497 0.89723 0.89433 0.93533 0.93493 0.90057 0.80169 0.90927 0.89514 0.89664 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.53 37.16 0.32 -2.49 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.83 16 3 C 0.24 5.50 1.89 -69.09 -0.13 5.37 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 5 C -0.53 -14.12 9.05 -34.44 -0.31 -14.43 16 6 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 9 Si 0.87 21.53 26.99 -169.99 -4.59 16.94 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.27 6.82 56.52 0.39 -5.88 16 13 N -0.71 -13.68 5.03 -54.94 -0.28 -13.95 16 14 C 0.50 8.91 6.15 -10.98 -0.07 8.84 16 15 O -0.55 -11.34 11.11 5.56 0.06 -11.27 16 16 C -0.13 -1.79 5.03 -27.88 -0.14 -1.93 16 17 C 0.01 0.09 2.40 -91.77 -0.22 -0.13 16 18 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 19 C -0.15 -1.97 8.83 37.15 0.33 -1.64 16 20 C -0.22 -2.57 4.80 -105.05 -0.50 -3.08 16 21 C 0.06 0.67 11.54 -17.36 -0.20 0.47 16 22 N -0.30 -3.86 12.58 30.63 0.39 -3.47 16 23 N -0.38 -3.99 4.01 -68.16 -0.27 -4.26 16 24 C 0.10 0.61 11.47 59.85 0.69 1.30 16 25 C 0.05 0.53 11.38 -17.22 -0.20 0.33 16 26 H 0.05 0.99 5.63 -51.93 -0.29 0.69 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.39 6.80 8.59 -40.82 -0.35 6.45 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.58 8.03 -51.93 -0.42 0.17 16 37 H 0.08 1.32 5.95 -51.93 -0.31 1.01 16 38 H 0.18 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -32.55 341.32 -6.12 -38.67 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.66 Total: 5.74 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.69 Total: -8.09 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.61 Total: -47.13 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.06 Total: -11.27 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.55 -6.12 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638057100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.542 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds