Wall clock time and date at job start Tue Mar 31 2020 03:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21277 * 119.99443 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00029 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46666 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46711 * 55.00390 * 17 16 14 19 19 C 1.52995 * 109.47248 * 295.00174 * 17 16 14 20 20 C 1.50697 * 109.46667 * 174.99842 * 17 16 14 21 21 C 1.39873 * 126.03785 * 59.69589 * 20 17 16 22 22 N 1.30839 * 108.20146 * 179.81545 * 21 20 17 23 23 N 1.40081 * 108.20564 * 0.43544 * 22 21 20 24 24 C 1.46500 * 126.03879 * 179.73796 * 23 22 21 25 25 C 1.34949 * 107.92609 * 359.72418 * 23 22 21 26 26 H 1.08998 * 109.46690 * 299.99440 * 1 2 3 27 27 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47747 * 59.99615 * 1 2 3 29 29 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 30 30 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 31 31 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 33 33 H 1.09000 * 109.47346 * 300.00371 * 16 14 13 34 34 H 1.08993 * 109.47151 * 60.00582 * 16 14 13 35 35 H 1.08998 * 109.47208 * 180.02562 * 19 17 16 36 36 H 1.09002 * 109.47077 * 300.00089 * 19 17 16 37 37 H 1.08996 * 109.47538 * 60.00102 * 19 17 16 38 38 H 1.08006 * 125.89816 * 359.97438 * 21 20 17 39 39 H 1.09000 * 109.47207 * 269.97825 * 24 23 22 40 40 H 1.09001 * 109.47000 * 29.98143 * 24 23 22 41 41 H 1.08998 * 109.46871 * 149.97823 * 24 23 22 42 42 H 1.08006 * 126.12947 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3902 15 8 -0.3344 2.6301 0.4665 16 6 0.0668 3.3267 2.6854 17 6 -1.3539 3.8831 2.5704 18 1 -2.0340 3.0843 2.2750 19 6 -1.3832 4.9933 1.5181 20 6 -1.7837 4.4419 3.9023 21 6 -1.1522 5.4738 4.6043 22 7 -1.8166 5.6808 5.7122 23 7 -2.8878 4.7790 5.7551 24 6 -3.8791 4.6686 6.8281 25 6 -2.8454 4.0301 4.6333 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8251 1.5986 -2.3975 32 1 2.2947 2.1150 1.9978 33 1 0.1071 2.5987 3.4956 34 1 0.7605 4.1411 2.8938 35 1 -2.3952 5.3900 1.4365 36 1 -0.7029 5.7921 1.8136 37 1 -1.0723 4.5892 0.5548 38 1 -0.2700 6.0092 4.2855 39 1 -3.5288 3.9555 7.5744 40 1 -4.0194 5.6436 7.2948 41 1 -4.8265 4.3246 6.4134 42 1 -3.5355 3.2433 4.3664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638057100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:05 Heat of formation + Delta-G solvation = 1.353071 kcal Electronic energy + Delta-G solvation = -21913.927624 eV Core-core repulsion = 18701.349228 eV Total energy + Delta-G solvation = -3212.578395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14158 -40.69144 -37.26049 -35.87020 -34.33769 -33.60388 -33.04809 -30.56923 -29.67740 -28.20868 -27.30306 -24.69864 -23.65438 -22.12524 -21.74547 -21.10552 -20.36050 -19.09471 -17.77391 -17.39989 -17.03449 -16.51589 -16.26369 -15.97804 -15.26495 -15.16576 -14.81943 -14.75696 -14.41550 -13.88764 -13.74576 -13.71919 -13.60447 -13.54520 -13.27026 -13.06427 -12.89050 -12.55217 -12.35174 -12.23522 -11.98829 -11.85718 -11.83774 -11.57691 -11.27376 -11.15685 -10.80726 -10.40168 -10.30421 -9.54285 -9.23526 -8.36613 -6.41608 1.01023 1.30786 1.34991 1.45899 1.75901 1.87944 1.99858 2.29144 2.65923 3.08168 3.69066 3.97120 4.07826 4.22441 4.34130 4.37468 4.41062 4.47771 4.47784 4.54696 4.65022 4.72550 4.76502 4.84181 4.86649 4.90625 4.91354 5.12330 5.16420 5.27870 5.32919 5.35356 5.47418 5.51543 5.57094 5.62007 5.77568 5.91616 6.19043 6.20646 6.64367 6.79503 7.07734 7.25087 7.66400 8.78723 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.031059 B = 0.003649 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.288754 B = 7670.692417 C = 7810.554562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.030 0.970 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.254 1.254 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.578 6.578 16 C -0.123 4.123 17 C 0.018 3.982 18 H 0.074 0.926 19 C -0.142 4.142 20 C -0.238 4.238 21 C 0.048 3.952 22 N -0.336 5.336 23 N -0.383 5.383 24 C 0.094 3.906 25 C 0.060 3.940 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.269 0.731 32 H 0.402 0.598 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.190 0.810 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 4.337 14.676 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.048 0.952 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.752 3.248 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.178 1.178 13 N -0.359 5.359 14 C 0.288 3.712 15 O -0.459 6.459 16 C -0.163 4.163 17 C -0.002 4.002 18 H 0.093 0.907 19 C -0.200 4.200 20 C -0.249 4.249 21 C -0.138 4.138 22 N -0.158 5.158 23 N -0.165 5.165 24 C -0.046 4.046 25 C -0.087 4.087 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.207 0.793 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -19.373 4.996 15.110 25.072 hybrid contribution 0.640 -0.284 -1.372 1.540 sum -18.733 4.712 13.738 23.704 Atomic orbital electron populations 1.21757 0.95561 1.00159 1.01405 1.21980 0.95243 0.98126 1.00897 1.18838 0.92846 0.90231 0.84282 0.95219 1.21276 0.90657 1.50012 0.94390 0.92820 1.25618 0.95728 0.94091 1.01459 1.69989 1.11324 1.50730 1.25192 0.86052 0.79971 0.79271 0.79549 1.20015 1.20622 1.17790 1.46409 1.15883 1.56549 1.17052 1.21249 0.81323 0.78079 0.90599 1.90607 1.51411 1.60698 1.43190 1.21733 0.98742 1.01586 0.94193 1.18939 0.94358 0.96949 0.89991 0.90719 1.21851 1.01302 0.97845 0.98971 1.20065 1.00785 1.03820 1.00230 1.23996 1.00192 0.97707 0.91860 1.77279 1.00907 1.15072 1.22543 1.48777 1.23106 1.26964 1.17700 1.22156 0.89612 1.04598 0.88238 1.22813 1.00181 0.98180 0.87512 0.92678 0.92714 0.94792 0.92214 0.93575 0.92162 0.76331 0.87715 0.87956 0.92910 0.92803 0.93074 0.79304 0.89738 0.89340 0.86882 0.78193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.53 71.98 0.61 -4.29 16 2 C -0.12 -5.17 5.59 30.59 0.17 -5.00 16 3 C 0.24 11.16 1.89 44.24 0.08 11.24 16 4 H 0.03 1.51 4.73 -2.39 -0.01 1.50 16 5 C -0.53 -28.29 9.05 25.60 0.23 -28.06 16 6 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 7 C 0.03 1.75 5.47 84.66 0.46 2.21 16 8 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 9 Si 0.93 44.84 26.99 68.60 1.85 46.69 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.25 -11.96 6.82 99.48 0.68 -11.28 16 13 N -0.71 -26.82 5.03 -446.10 -2.24 -29.06 16 14 C 0.50 17.09 6.15 87.66 0.54 17.63 16 15 O -0.58 -23.18 11.11 -3.02 -0.03 -23.21 16 16 C -0.12 -2.99 5.03 29.85 0.15 -2.84 16 17 C 0.02 0.42 2.40 -11.54 -0.03 0.39 16 18 H 0.07 1.83 7.92 -2.39 -0.02 1.82 16 19 C -0.14 -3.68 8.83 71.98 0.64 -3.04 16 20 C -0.24 -4.96 4.80 -20.14 -0.10 -5.06 16 21 C 0.05 1.05 11.54 85.24 0.98 2.04 16 22 N -0.34 -8.01 12.58 -57.02 -0.72 -8.73 16 23 N -0.38 -6.98 4.01 -369.56 -1.48 -8.46 16 24 C 0.09 0.84 11.47 127.77 1.47 2.30 16 25 C 0.06 1.04 11.38 83.54 0.95 1.99 16 26 H 0.05 2.00 5.63 -2.39 -0.01 1.98 16 27 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.03 1.36 7.89 -2.39 -0.02 1.34 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.40 13.55 8.59 -92.71 -0.80 12.75 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.28 8.03 -2.39 -0.02 1.26 16 37 H 0.05 1.64 5.95 -2.39 -0.01 1.63 16 38 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.52 341.32 4.02 -66.49 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.18 Total: 22.49 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 6.16 Total: -10.48 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -4.14 Total: -101.98 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.03 Total: -23.21 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -70.52 4.02 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638057100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.848 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds