Wall clock time and date at job start Tue Mar 31 2020 03:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53009 * 109.46954 * 2 1 4 4 H 1.08996 * 109.46835 * 304.99972 * 3 2 1 5 5 C 1.50694 * 109.46846 * 185.00027 * 3 2 1 6 6 H 1.08008 * 119.99730 * 239.99749 * 5 3 2 7 7 C 1.37871 * 120.00479 * 59.99612 * 5 3 2 8 8 N 1.31516 * 119.99796 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00418 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46621 * 90.00268 * 9 7 5 11 11 H 1.48497 * 109.47209 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.46728 * 330.00874 * 9 7 5 13 13 N 1.46497 * 109.47104 * 64.99909 * 3 2 1 14 14 C 1.34775 * 120.00271 * 275.00059 * 13 3 2 15 15 O 1.21287 * 119.99882 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00503 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47300 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.47119 * 305.00111 * 17 16 14 19 19 C 1.53007 * 109.47094 * 64.99889 * 17 16 14 20 20 C 1.50696 * 109.47051 * 184.99563 * 17 16 14 21 21 C 1.39867 * 126.04245 * 299.99947 * 20 17 16 22 22 N 1.30834 * 108.20347 * 179.97438 * 21 20 17 23 23 N 1.40082 * 108.20758 * 0.02562 * 22 21 20 24 24 C 1.46500 * 126.04008 * 180.02562 * 23 22 21 25 25 C 1.34954 * 107.92310 * 0.02562 * 23 22 21 26 26 H 1.09001 * 109.47254 * 300.00171 * 1 2 3 27 27 H 1.08995 * 109.46669 * 60.00047 * 1 2 3 28 28 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47332 * 239.99682 * 2 1 3 30 30 H 1.09004 * 109.46938 * 119.99417 * 2 1 3 31 31 H 0.96999 * 120.00013 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00072 * 94.99921 * 13 3 2 33 33 H 1.08996 * 109.46980 * 59.99630 * 16 14 13 34 34 H 1.08999 * 109.46832 * 299.99479 * 16 14 13 35 35 H 1.09002 * 109.46643 * 299.99731 * 19 17 16 36 36 H 1.08997 * 109.47169 * 59.99738 * 19 17 16 37 37 H 1.09000 * 109.46782 * 180.02562 * 19 17 16 38 38 H 1.08000 * 125.89932 * 0.02562 * 21 20 17 39 39 H 1.08993 * 109.47474 * 269.97369 * 24 23 22 40 40 H 1.08995 * 109.46967 * 29.97700 * 24 23 22 41 41 H 1.09009 * 109.47150 * 149.97348 * 24 23 22 42 42 H 1.08001 * 126.12517 * 179.73977 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0050 0.8813 -1.3817 10 1 6.5549 -0.3502 -0.7600 11 1 6.3831 0.9223 -2.8171 12 1 6.5570 2.0738 -0.6900 13 7 1.6525 2.0976 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3393 2.6327 0.4341 16 6 0.0366 3.3387 2.6544 17 6 -1.3823 3.8954 2.5207 18 1 -1.4347 4.5517 1.6520 19 6 -2.3694 2.7393 2.3467 20 6 -1.7351 4.6747 3.7612 21 6 -1.7765 4.1712 5.0655 22 7 -2.1212 5.1447 5.8687 23 7 -2.3108 6.3002 5.0998 24 6 -2.7028 7.6178 5.6062 25 6 -2.0687 5.9852 3.8101 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8293 -0.0604 -2.9501 32 1 2.2719 2.1232 1.9977 33 1 0.7280 4.1542 2.8666 34 1 0.0679 2.6146 3.4685 35 1 -2.1142 2.1756 1.4494 36 1 -2.3170 2.0830 3.2153 37 1 -3.3801 3.1360 2.2510 38 1 -1.5604 3.1546 5.3589 39 1 -3.7897 7.6987 5.6057 40 1 -2.3297 7.7420 6.6228 41 1 -2.2804 8.3932 4.9669 42 1 -2.1331 6.6578 2.9675 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638057103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:24 Heat of formation + Delta-G solvation = 23.440578 kcal Electronic energy + Delta-G solvation = -21845.650445 eV Core-core repulsion = 18634.029836 eV Total energy + Delta-G solvation = -3211.620609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29971 -39.07283 -35.64676 -34.52301 -32.77995 -32.31584 -30.95003 -29.65629 -27.79980 -26.59388 -26.42458 -23.18518 -22.38125 -21.17422 -20.31738 -19.42058 -19.13425 -17.03525 -16.72771 -15.61683 -15.55716 -15.31492 -14.87532 -14.46463 -14.26045 -13.96159 -13.46539 -13.12809 -13.03873 -12.69858 -12.66315 -12.49341 -12.41821 -11.71872 -11.50622 -11.25827 -11.20493 -10.97812 -10.84862 -10.83402 -10.68113 -10.32107 -10.28007 -10.09201 -9.57555 -9.49143 -8.99780 -8.79107 -8.45896 -8.36050 -7.71827 -6.09194 -4.18228 1.81337 2.42461 2.77223 3.25748 3.32795 3.34892 3.54971 4.18888 4.35835 4.49062 4.76730 4.87553 4.99771 5.11989 5.13697 5.22020 5.37182 5.43662 5.67554 5.72165 5.84241 5.89703 5.94146 6.17905 6.35362 6.44270 6.50375 6.53649 6.61797 6.70098 6.79665 6.91730 7.10505 7.25757 7.43355 7.55607 7.62526 7.66983 7.79815 7.96159 8.23557 8.77076 8.83751 9.25845 9.50012 10.96030 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.029615 B = 0.003449 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.227101 B = 8115.505127 C = 8660.027311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.548 6.548 16 C -0.134 4.134 17 C 0.007 3.993 18 H 0.081 0.919 19 C -0.146 4.146 20 C -0.220 4.220 21 C 0.055 3.945 22 N -0.303 5.303 23 N -0.383 5.383 24 C 0.104 3.896 25 C 0.052 3.948 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.020 0.980 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.181 0.819 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 10.275 12.946 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.428 6.428 16 C -0.174 4.174 17 C -0.014 4.014 18 H 0.099 0.901 19 C -0.203 4.203 20 C -0.232 4.232 21 C -0.131 4.131 22 N -0.124 5.124 23 N -0.165 5.165 24 C -0.038 4.038 25 C -0.094 4.094 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.198 0.802 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.728 10.650 13.337 20.159 hybrid contribution 1.525 -0.195 -0.516 1.621 sum -9.203 10.456 12.821 18.932 Atomic orbital electron populations 1.21844 0.98327 0.97924 1.01313 1.21927 0.92661 0.99912 1.02115 1.18735 0.93991 0.89142 0.81284 0.93398 1.21262 0.90931 1.38796 1.06170 0.92189 1.24884 0.98483 0.94903 0.95435 1.69897 1.35038 1.37739 1.09342 0.86484 0.85079 0.78414 0.77331 1.20588 1.21118 1.19900 1.46518 1.14889 1.56158 1.18365 1.20407 0.82544 0.79209 0.89264 1.90623 1.51169 1.60158 1.40830 1.21743 0.97740 1.00900 0.97055 1.19117 0.93138 0.96024 0.93076 0.90109 1.21927 0.97859 0.97704 1.02808 1.20217 1.13171 0.93768 0.96013 1.23752 0.99148 0.98770 0.91398 1.77314 1.23527 0.91942 1.19635 1.48410 1.54033 1.09089 1.05003 1.21797 1.01027 0.79369 1.01572 1.22362 1.01861 0.97239 0.87896 0.94028 0.93199 0.96044 0.88473 0.95173 0.92633 0.78117 0.89820 0.89766 0.89891 0.93645 0.93569 0.80239 0.91020 0.89509 0.89609 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.08 5.45 -26.72 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.03 8.73 -34.45 -0.30 -14.33 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.38 5.02 -54.93 -0.28 -14.66 16 14 C 0.50 9.35 6.11 -10.99 -0.07 9.28 16 15 O -0.55 -11.90 11.11 5.55 0.06 -11.84 16 16 C -0.13 -1.86 5.03 -27.88 -0.14 -2.00 16 17 C 0.01 0.09 2.40 -91.77 -0.22 -0.13 16 18 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 19 C -0.15 -2.00 8.82 37.16 0.33 -1.68 16 20 C -0.22 -2.65 4.80 -105.06 -0.50 -3.16 16 21 C 0.06 0.67 11.54 -17.37 -0.20 0.47 16 22 N -0.30 -3.92 12.58 30.62 0.39 -3.53 16 23 N -0.38 -4.10 4.01 -68.16 -0.27 -4.37 16 24 C 0.10 0.64 11.47 59.85 0.69 1.33 16 25 C 0.05 0.55 11.38 -17.22 -0.20 0.35 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 6.88 8.54 -40.82 -0.35 6.53 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.37 5.95 -51.93 -0.31 1.07 16 36 H 0.04 0.57 8.02 -51.93 -0.42 0.15 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -31.62 341.41 -6.70 -38.32 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.66 Total: 6.97 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.69 Total: -7.53 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.46 Total: -46.65 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.06 Total: -11.84 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.62 -6.70 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638057103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.762 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds