Wall clock time and date at job start Tue Mar 31 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46784 * 2 1 4 4 C 1.53007 * 109.46842 * 240.00319 * 2 1 3 5 5 C 1.52998 * 109.47225 * 120.00196 * 2 1 3 6 6 H 1.09001 * 109.46843 * 179.97438 * 5 2 1 7 7 C 1.52994 * 109.47162 * 299.99998 * 5 2 1 8 8 N 1.46501 * 109.47151 * 174.99912 * 7 5 2 9 9 C 1.36932 * 120.00378 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00060 * 0.02562 * 9 8 7 11 11 C 1.38807 * 120.00490 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99782 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00427 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46787 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47378 * 120.00007 * 13 11 9 16 16 H 1.48497 * 109.47142 * 240.00079 * 13 11 9 17 17 N 1.46502 * 109.46996 * 60.00155 * 5 2 1 18 18 C 1.34779 * 120.00350 * 84.99667 * 17 5 2 19 19 O 1.21627 * 119.99475 * 0.02562 * 18 17 5 20 20 C 1.47256 * 120.00424 * 179.97438 * 18 17 5 21 21 C 1.46694 * 126.93910 * 0.33503 * 20 18 17 22 22 C 1.34487 * 106.33088 * 180.11674 * 21 20 18 23 23 N 1.36455 * 108.85650 * 359.60056 * 22 21 20 24 24 H 0.97001 * 124.84872 * 180.26003 * 23 22 21 25 25 C 1.34653 * 110.29669 * 0.26539 * 23 22 21 26 26 H 1.09003 * 109.47313 * 299.99501 * 1 2 3 27 27 H 1.09001 * 109.47804 * 59.99754 * 1 2 3 28 28 H 1.09009 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46811 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47436 * 299.99827 * 3 2 1 31 31 H 1.08996 * 109.47065 * 60.01012 * 3 2 1 32 32 H 1.08995 * 109.47108 * 299.99995 * 4 2 1 33 33 H 1.09004 * 109.47039 * 59.99947 * 4 2 1 34 34 H 1.08996 * 109.46690 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47291 * 294.99898 * 7 5 2 36 36 H 1.09004 * 109.46913 * 55.00423 * 7 5 2 37 37 H 0.97004 * 119.99712 * 0.02562 * 8 7 5 38 38 H 0.97006 * 120.00061 * 179.97438 * 12 11 9 39 39 H 0.96998 * 119.99908 * 265.00030 * 17 5 2 40 40 H 1.07995 * 126.83555 * 359.97438 * 21 20 18 41 41 H 1.08002 * 125.57471 * 179.87081 * 22 21 20 42 42 H 1.08005 * 125.80161 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7216 1.2489 7 6 1.5301 -0.0001 2.4984 8 7 1.9176 -0.7568 3.6915 9 6 1.5691 -0.3008 4.9347 10 1 1.0080 0.6166 5.0358 11 6 1.9358 -1.0179 6.0652 12 7 2.6191 -2.1361 5.9421 13 14 1.4597 -0.3962 7.7611 14 1 0.6998 0.8727 7.6277 15 1 0.6138 -1.4101 8.4407 16 1 2.6864 -0.1571 8.5631 17 7 1.5517 -2.1025 1.2491 18 6 2.2285 -3.0566 0.5795 19 8 3.2449 -2.7708 -0.0243 20 6 1.7379 -4.4450 0.5799 21 6 0.5352 -4.9550 1.2473 22 6 0.4844 -6.2721 0.9804 23 7 1.5517 -6.6052 0.1982 24 1 1.7388 -7.4973 -0.1335 25 6 2.3081 -5.5185 -0.0471 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2496 35 1 1.9647 0.9984 2.5444 36 1 0.4437 0.0780 2.4548 37 1 2.4219 -1.5805 3.6008 38 1 2.8757 -2.6372 6.7321 39 1 0.7413 -2.3304 1.7309 40 1 -0.1680 -4.3863 1.8376 41 1 -0.2791 -6.9539 1.3249 42 1 3.2118 -5.4981 -0.6383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677252012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:12 Heat of formation + Delta-G solvation = 11.894098 kcal Electronic energy + Delta-G solvation = -22632.138857 eV Core-core repulsion = 19420.017555 eV Total energy + Delta-G solvation = -3212.121302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96269 -39.48397 -36.99041 -34.32303 -33.00606 -31.17433 -30.54053 -29.00350 -27.60424 -27.00845 -26.53620 -23.88654 -22.51179 -21.24414 -20.52554 -19.23598 -18.62811 -18.33528 -16.99671 -15.70732 -15.57592 -15.24508 -14.57638 -14.17329 -13.81252 -13.78767 -13.62082 -13.34977 -13.11840 -13.02202 -12.88733 -12.58278 -12.05074 -11.88682 -11.79424 -11.67803 -11.24148 -11.10824 -10.97994 -10.78273 -10.60684 -10.37711 -10.12555 -9.81490 -9.67343 -9.36451 -8.83124 -8.72704 -8.38228 -8.17190 -6.86573 -5.71142 -3.00306 2.03172 2.57625 3.23638 3.45576 3.51209 3.53526 3.90994 4.02133 4.62055 5.03123 5.08380 5.16508 5.19902 5.28417 5.44593 5.59842 5.60768 5.71158 5.84685 5.90249 5.97584 6.02527 6.04161 6.15693 6.21415 6.22634 6.24998 6.30662 6.43827 6.58520 6.59455 6.65665 6.78800 6.84161 6.88218 6.99336 7.20586 7.48909 7.74164 8.19662 8.46588 8.88242 9.58301 10.16481 10.51924 11.51034 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.006278 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.485110 B = 4458.638211 C = 6181.576448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.128 4.128 5 C 0.151 3.849 6 H 0.085 0.915 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.281 1.281 15 H -0.293 1.293 16 H -0.292 1.292 17 N -0.702 5.702 18 C 0.591 3.409 19 O -0.559 6.559 20 C -0.225 4.225 21 C -0.162 4.162 22 C -0.024 4.024 23 N -0.557 5.557 24 H 0.414 0.586 25 C 0.066 3.934 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.028 0.972 37 H 0.386 0.614 38 H 0.253 0.747 39 H 0.402 0.598 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 -5.466 -14.932 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.186 4.186 5 C 0.046 3.954 6 H 0.103 0.897 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.220 1.220 16 H -0.220 1.220 17 N -0.351 5.351 18 C 0.379 3.621 19 O -0.440 6.440 20 C -0.235 4.235 21 C -0.186 4.186 22 C -0.151 4.151 23 N -0.152 5.152 24 H 0.250 0.750 25 C -0.070 4.070 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.221 0.779 38 H 0.063 0.937 39 H 0.237 0.763 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.553 -5.265 -15.234 16.749 hybrid contribution -0.399 -0.550 1.217 1.394 sum -4.952 -5.814 -14.017 15.962 Atomic orbital electron populations 1.21906 0.94827 1.01672 1.01398 1.20898 0.95752 0.95480 0.95663 1.21884 1.01146 0.95154 1.01624 1.21875 1.01556 0.99775 0.95346 1.21216 0.99701 0.80438 0.94090 0.89703 1.21091 0.97297 0.94635 0.85594 1.42379 1.66906 1.27809 1.00457 1.19250 1.28714 1.05361 0.83672 0.91200 1.24738 1.01034 0.97429 0.97728 1.69693 1.43369 1.16492 1.28204 0.86148 0.77544 0.77763 0.84907 1.20604 1.21979 1.21962 1.45685 1.29122 1.08072 1.52258 1.17262 0.82885 0.83744 0.78168 1.90730 1.25201 1.82744 1.45281 1.20488 1.00202 0.93770 1.09032 1.22137 0.98752 0.94066 1.03663 1.21730 0.94362 0.97168 1.01889 1.41591 1.21550 1.10330 1.41746 0.74968 1.21769 0.97558 0.85589 1.02064 0.92017 0.93390 0.92783 0.92624 0.93039 0.91978 0.92712 0.94291 0.92079 0.94882 0.95484 0.77936 0.93657 0.76296 0.83671 0.81650 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.97 37.16 0.30 -1.59 16 2 C -0.08 -1.12 0.62 -154.51 -0.10 -1.22 16 3 C -0.14 -1.89 8.12 37.16 0.30 -1.59 16 4 C -0.13 -1.93 7.00 37.16 0.26 -1.67 16 5 C 0.15 2.68 1.69 -67.93 -0.11 2.56 16 6 H 0.08 1.73 7.57 -51.93 -0.39 1.34 16 7 C 0.14 2.83 5.10 -4.04 -0.02 2.81 16 8 N -0.73 -18.49 5.43 -59.91 -0.33 -18.81 16 9 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 13 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 N -0.70 -12.20 3.64 -54.94 -0.20 -12.40 16 18 C 0.59 10.64 6.16 -12.59 -0.08 10.56 16 19 O -0.56 -11.25 14.03 5.25 0.07 -11.18 16 20 C -0.22 -3.51 6.29 -103.35 -0.65 -4.16 16 21 C -0.16 -2.23 10.56 -37.49 -0.40 -2.62 16 22 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 23 N -0.56 -5.41 5.90 -12.84 -0.08 -5.48 16 24 H 0.41 2.41 8.96 -40.82 -0.37 2.05 16 25 C 0.07 0.84 11.69 -16.84 -0.20 0.65 16 26 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.73 7.61 -51.92 -0.39 0.33 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 32 H 0.05 0.89 5.78 -51.93 -0.30 0.59 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.01 7.53 -51.93 -0.39 0.61 16 35 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 36 H 0.03 0.53 6.17 -51.93 -0.32 0.21 16 37 H 0.39 10.57 7.33 -40.82 -0.30 10.27 16 38 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.40 6.84 7.73 -40.82 -0.32 6.52 16 40 H 0.15 1.91 7.70 -52.49 -0.40 1.51 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -33.49 336.29 -7.18 -40.67 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.28 Total: 16.33 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.14 Total: -4.01 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.12 Total: -64.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.49 -7.18 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677252012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds