Wall clock time and date at job start Tue Mar 31 2020 01:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.52994 * 109.47234 * 119.99741 * 2 1 3 5 5 C 1.53003 * 109.47306 * 65.00197 * 4 2 1 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 2 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 2 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 2 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21620 * 120.00226 * 0.02562 * 18 17 5 20 20 C 1.47265 * 119.99614 * 180.02562 * 18 17 5 21 21 C 1.46685 * 126.94085 * 359.69457 * 20 18 17 22 22 C 1.34495 * 106.33017 * 179.82853 * 21 20 18 23 23 N 1.36454 * 108.85436 * 0.43195 * 22 21 20 24 24 H 0.96992 * 124.85114 * 179.69195 * 23 22 21 25 25 C 1.34663 * 110.29534 * 359.71502 * 23 22 21 26 26 H 1.08998 * 109.47054 * 60.00135 * 1 2 3 27 27 H 1.09006 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47460 * 299.99649 * 1 2 3 29 29 H 1.08994 * 109.47074 * 240.00325 * 2 1 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47138 * 300.00296 * 3 2 1 32 32 H 1.09007 * 109.46990 * 60.00343 * 3 2 1 33 33 H 1.09001 * 109.47619 * 305.00285 * 4 2 1 34 34 H 1.09003 * 109.47243 * 184.99947 * 4 2 1 35 35 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 36 36 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 37 37 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 40 40 H 1.07995 * 126.83787 * 359.97438 * 21 20 18 41 41 H 1.07998 * 125.57029 * 180.14859 * 22 21 20 42 42 H 1.07996 * 125.79351 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.0355 -2.8888 2.4918 8 7 1.7571 -4.3233 2.3875 9 6 2.0409 -5.1540 3.4385 10 1 2.4659 -4.7510 4.3459 11 6 1.7825 -6.5141 3.3375 12 7 1.2651 -7.0053 2.2314 13 14 2.1690 -7.6472 4.7714 14 1 1.3907 -7.2217 5.9623 15 1 1.8037 -9.0413 4.4130 16 1 3.6203 -7.5797 5.0784 17 7 2.3149 -2.8420 0.0626 18 6 1.7815 -2.7778 -1.1735 19 8 0.7364 -2.1829 -1.3548 20 6 2.4644 -3.4282 -2.3047 21 6 3.7258 -4.1756 -2.2612 22 6 3.9632 -4.5902 -3.5184 23 7 2.9556 -4.1490 -4.3259 24 1 2.8977 -4.3133 -5.2801 25 6 2.0534 -3.4523 -3.6089 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2951 35 1 1.4634 -2.4668 3.3182 36 1 3.0998 -2.7373 2.6720 37 1 1.3758 -4.6853 1.5724 38 1 1.0841 -7.9557 2.1610 39 1 3.1486 -3.3163 0.2071 40 1 4.3403 -4.3587 -1.3922 41 1 4.8147 -5.1728 -3.8375 42 1 1.1578 -2.9908 -3.9978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714920375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:24 Heat of formation + Delta-G solvation = 8.149113 kcal Electronic energy + Delta-G solvation = -22369.336886 eV Core-core repulsion = 19157.053189 eV Total energy + Delta-G solvation = -3212.283697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95209 -39.25865 -36.37432 -34.82698 -33.26675 -31.42116 -30.49980 -29.11161 -28.69822 -26.77480 -25.45493 -23.33665 -22.42984 -20.71008 -20.24619 -19.49549 -19.20031 -18.60077 -17.06668 -15.86337 -15.50269 -15.38228 -14.53175 -14.28694 -13.80519 -13.71954 -13.68461 -13.33603 -13.10186 -12.92546 -12.88745 -12.74249 -12.03083 -11.92940 -11.90512 -11.74147 -11.38791 -10.93739 -10.88553 -10.74727 -10.41203 -10.15775 -10.12680 -9.90396 -9.64055 -9.27665 -8.84617 -8.71854 -8.39163 -8.18056 -6.88436 -5.71363 -3.00837 2.03453 2.57879 3.23904 3.46477 3.50886 3.51964 3.90982 4.03375 4.61929 5.03146 5.08101 5.19997 5.29721 5.31565 5.42529 5.59496 5.60404 5.73115 5.77761 5.83258 5.97295 5.99075 6.08718 6.15737 6.19668 6.23366 6.24317 6.33925 6.43173 6.56889 6.62602 6.78997 6.81396 6.85266 6.96686 7.01623 7.20697 7.49139 7.73045 8.20328 8.46479 8.89319 9.58042 10.15773 10.51460 11.50718 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.005817 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.139401 B = 4812.697268 C = 6558.202446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.137 3.863 6 H 0.090 0.910 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.287 1.287 17 N -0.704 5.704 18 C 0.589 3.411 19 O -0.552 6.552 20 C -0.224 4.224 21 C -0.162 4.162 22 C -0.025 4.025 23 N -0.558 5.558 24 H 0.414 0.586 25 C 0.066 3.934 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.022 0.978 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.402 0.598 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 10.874 -12.597 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.160 4.160 5 C 0.033 3.967 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.213 1.213 17 N -0.354 5.354 18 C 0.377 3.623 19 O -0.433 6.433 20 C -0.235 4.235 21 C -0.186 4.186 22 C -0.152 4.152 23 N -0.152 5.152 24 H 0.250 0.750 25 C -0.070 4.070 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.355 11.188 -12.653 17.442 hybrid contribution 0.548 -1.244 0.240 1.380 sum 4.903 9.944 -12.413 16.643 Atomic orbital electron populations 1.21821 0.95045 1.03134 0.99370 1.21137 0.96515 0.94613 0.98839 1.21872 1.00270 0.97200 1.00962 1.22012 1.00717 0.95083 0.98214 1.21320 0.98443 0.90901 0.86077 0.89246 1.20961 0.97693 0.86501 0.93276 1.42345 1.76455 1.00889 1.17807 1.19174 1.34889 0.88877 0.94334 0.91286 1.24739 1.01843 0.96904 0.97342 1.69673 1.49489 1.12686 1.25983 0.86284 0.77904 0.80139 0.81919 1.21319 1.21771 1.21337 1.45736 1.27241 1.55436 1.06976 1.17302 0.83958 0.78769 0.82227 1.90725 1.23340 1.44409 1.84826 1.20495 0.99362 1.10052 0.93553 1.22144 0.97395 1.02241 0.96859 1.21730 0.95614 1.06720 0.91126 1.41593 1.19692 1.43277 1.10683 0.74989 1.21766 0.95439 0.98458 0.91316 0.94025 0.90407 0.94510 0.90410 0.93416 0.93381 0.93246 0.91389 0.92119 0.95101 0.95992 0.77865 0.93528 0.76316 0.83676 0.81679 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.03 37.16 0.30 -1.77 16 2 C -0.09 -1.34 2.38 -90.62 -0.22 -1.56 16 3 C -0.15 -1.79 9.19 37.16 0.34 -1.44 16 4 C -0.12 -1.77 4.36 -26.73 -0.12 -1.89 16 5 C 0.14 2.40 2.33 -67.93 -0.16 2.24 16 6 H 0.09 1.76 5.92 -51.93 -0.31 1.45 16 7 C 0.14 2.89 5.82 -4.04 -0.02 2.87 16 8 N -0.73 -18.49 5.43 -59.91 -0.33 -18.81 16 9 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 13 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.70 -12.05 4.46 -54.93 -0.25 -12.29 16 18 C 0.59 10.30 6.36 -12.59 -0.08 10.22 16 19 O -0.55 -10.50 11.86 5.26 0.06 -10.44 16 20 C -0.22 -3.44 6.29 -103.35 -0.65 -4.09 16 21 C -0.16 -2.21 10.56 -37.50 -0.40 -2.61 16 22 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 23 N -0.56 -5.36 5.90 -12.84 -0.08 -5.44 16 24 H 0.41 2.39 8.96 -40.82 -0.37 2.03 16 25 C 0.07 0.83 11.69 -16.84 -0.20 0.63 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.37 4.75 -51.93 -0.25 1.12 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.27 5.19 -51.93 -0.27 1.00 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.39 10.54 7.33 -40.82 -0.30 10.24 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.40 6.76 7.73 -40.82 -0.32 6.44 16 40 H 0.15 1.90 7.69 -52.49 -0.40 1.50 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -32.97 339.10 -7.82 -40.79 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.40 Total: 16.51 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.64 Total: -5.23 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.08 Total: -64.20 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.97 -7.82 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714920375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.937 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds