Wall clock time and date at job start Tue Mar 31 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 C 1.52994 * 109.47234 * 119.99741 * 2 1 3 5 5 C 1.53003 * 109.47306 * 65.00197 * 4 2 1 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 2 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 2 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 2 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21620 * 120.00226 * 0.02562 * 18 17 5 20 20 C 1.47265 * 119.99614 * 180.02562 * 18 17 5 21 21 C 1.46685 * 126.94085 * 359.69457 * 20 18 17 22 22 C 1.34495 * 106.33017 * 179.82853 * 21 20 18 23 23 N 1.36454 * 108.85436 * 0.43195 * 22 21 20 24 24 H 0.96992 * 124.85114 * 179.69195 * 23 22 21 25 25 C 1.34663 * 110.29534 * 359.71502 * 23 22 21 26 26 H 1.08998 * 109.47054 * 60.00135 * 1 2 3 27 27 H 1.09006 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47460 * 299.99649 * 1 2 3 29 29 H 1.08994 * 109.47074 * 240.00325 * 2 1 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47138 * 300.00296 * 3 2 1 32 32 H 1.09007 * 109.46990 * 60.00343 * 3 2 1 33 33 H 1.09001 * 109.47619 * 305.00285 * 4 2 1 34 34 H 1.09003 * 109.47243 * 184.99947 * 4 2 1 35 35 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 36 36 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 37 37 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 40 40 H 1.07995 * 126.83787 * 359.97438 * 21 20 18 41 41 H 1.07998 * 125.57029 * 180.14859 * 22 21 20 42 42 H 1.07996 * 125.79351 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1954 1.1880 6 1 0.5564 -2.2707 1.0527 7 6 2.0355 -2.8888 2.4918 8 7 1.7571 -4.3233 2.3875 9 6 2.0409 -5.1540 3.4385 10 1 2.4659 -4.7510 4.3459 11 6 1.7825 -6.5141 3.3375 12 7 1.2651 -7.0053 2.2314 13 14 2.1690 -7.6472 4.7714 14 1 1.3907 -7.2217 5.9623 15 1 1.8037 -9.0413 4.4130 16 1 3.6203 -7.5797 5.0784 17 7 2.3149 -2.8420 0.0626 18 6 1.7815 -2.7778 -1.1735 19 8 0.7364 -2.1829 -1.3548 20 6 2.4644 -3.4282 -2.3047 21 6 3.7258 -4.1756 -2.2612 22 6 3.9632 -4.5902 -3.5184 23 7 2.9556 -4.1490 -4.3259 24 1 2.8977 -4.3133 -5.2801 25 6 2.0534 -3.4523 -3.6089 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6054 -0.2617 2.1370 34 1 3.1264 -0.6443 1.2951 35 1 1.4634 -2.4668 3.3182 36 1 3.0998 -2.7373 2.6720 37 1 1.3758 -4.6853 1.5724 38 1 1.0841 -7.9557 2.1610 39 1 3.1486 -3.3163 0.2071 40 1 4.3403 -4.3587 -1.3922 41 1 4.8147 -5.1728 -3.8375 42 1 1.1578 -2.9908 -3.9978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714920375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:23 Heat of formation + Delta-G solvation = -14.212908 kcal Electronic energy + Delta-G solvation = -22370.306576 eV Core-core repulsion = 19157.053189 eV Total energy + Delta-G solvation = -3213.253387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93841 -40.55590 -37.77091 -36.40175 -34.91104 -33.05462 -31.84849 -30.37585 -29.84942 -27.90369 -27.14903 -24.85762 -24.02764 -21.94309 -21.39047 -20.73934 -20.38333 -19.60082 -19.08296 -17.18846 -16.90944 -16.78077 -16.29954 -15.43761 -15.23227 -15.19997 -14.74399 -14.59705 -14.50149 -14.47126 -14.14305 -13.83157 -13.57126 -13.19100 -13.02411 -12.94408 -12.86414 -12.72702 -12.50574 -12.29847 -12.10379 -11.85476 -11.56670 -11.34472 -11.19619 -10.93767 -10.60414 -9.84260 -9.59361 -9.20080 -8.97724 -7.90706 -5.20574 0.93025 1.49035 1.52298 1.58274 1.62255 2.31189 2.58134 2.71077 2.78770 3.42790 3.71576 4.04060 4.13412 4.14383 4.26633 4.29991 4.42888 4.45393 4.49746 4.61050 4.72280 4.84367 4.92955 4.93320 4.96990 5.03031 5.05701 5.13330 5.18674 5.22415 5.32199 5.43427 5.52761 5.63586 5.71667 5.79099 5.84789 6.03356 6.29250 6.73475 6.87429 7.36322 7.56035 8.11034 8.35361 9.32124 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.005817 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.139401 B = 4812.697268 C = 6558.202446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.112 4.112 5 C 0.147 3.853 6 H 0.063 0.937 7 C 0.145 3.855 8 N -0.741 5.741 9 C -0.245 4.245 10 H 0.078 0.922 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.280 1.280 15 H -0.298 1.298 16 H -0.275 1.275 17 N -0.704 5.704 18 C 0.582 3.418 19 O -0.576 6.576 20 C -0.267 4.267 21 C -0.195 4.195 22 C -0.005 4.005 23 N -0.537 5.537 24 H 0.436 0.564 25 C 0.072 3.928 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.402 0.598 40 H 0.140 0.860 41 H 0.203 0.797 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 11.542 -12.951 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.151 4.151 5 C 0.042 3.958 6 H 0.082 0.918 7 C 0.018 3.982 8 N -0.384 5.384 9 C -0.377 4.377 10 H 0.096 0.904 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.206 1.206 15 H -0.224 1.224 16 H -0.201 1.201 17 N -0.354 5.354 18 C 0.372 3.628 19 O -0.459 6.459 20 C -0.277 4.277 21 C -0.219 4.219 22 C -0.133 4.133 23 N -0.133 5.133 24 H 0.276 0.724 25 C -0.066 4.066 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.237 0.763 40 H 0.158 0.842 41 H 0.220 0.780 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.771 11.892 -13.014 18.549 hybrid contribution 0.117 -1.414 0.291 1.448 sum 5.887 10.478 -12.723 17.503 Atomic orbital electron populations 1.21741 0.95697 1.01388 1.00013 1.21060 0.95906 0.96062 0.97751 1.21804 1.00784 0.95293 1.01801 1.21946 1.01461 0.92798 0.98917 1.21139 0.96990 0.92587 0.85047 0.91844 1.21110 0.98276 0.83983 0.94847 1.42515 1.76356 1.02829 1.16743 1.19614 1.33592 0.89476 0.95014 0.90394 1.25567 1.02565 0.98558 0.99945 1.69852 1.51398 1.12495 1.28164 0.85201 0.78127 0.77518 0.78810 1.20598 1.22429 1.20120 1.45708 1.27116 1.55571 1.06980 1.17709 0.83803 0.78511 0.82762 1.90701 1.24358 1.45601 1.85207 1.20560 1.00914 1.12199 0.94012 1.22257 0.97447 1.03883 0.98335 1.22233 0.95977 1.05010 0.90094 1.41597 1.18450 1.41600 1.11680 0.72412 1.21940 0.95951 0.97987 0.90717 0.93903 0.93325 0.93228 0.92404 0.92557 0.92874 0.92094 0.90137 0.90953 0.94688 0.94664 0.79409 0.94185 0.76324 0.84198 0.77990 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.03 71.98 0.58 -3.41 16 2 C -0.09 -2.54 2.38 -10.79 -0.03 -2.57 16 3 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 4 C -0.11 -3.20 4.36 30.59 0.13 -3.07 16 5 C 0.15 5.25 2.33 44.99 0.10 5.36 16 6 H 0.06 2.61 5.92 -2.39 -0.01 2.60 16 7 C 0.14 5.82 5.82 86.38 0.50 6.32 16 8 N -0.74 -38.18 5.43 -343.46 -1.87 -40.05 16 9 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 13 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 N -0.70 -24.99 4.46 -445.94 -1.99 -26.98 16 18 C 0.58 21.20 6.36 86.62 0.55 21.75 16 19 O -0.58 -22.91 11.86 -4.09 -0.05 -22.96 16 20 C -0.27 -8.31 6.29 -19.04 -0.12 -8.43 16 21 C -0.20 -5.30 10.56 23.62 0.25 -5.05 16 22 C 0.00 -0.10 11.89 83.12 0.99 0.89 16 23 N -0.54 -9.10 5.90 -194.55 -1.15 -10.24 16 24 H 0.44 3.67 8.96 -92.71 -0.83 2.84 16 25 C 0.07 1.75 11.69 83.91 0.98 2.73 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.77 4.75 -2.38 -0.01 1.76 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.91 5.19 -2.39 -0.01 1.90 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.37 21.08 7.33 -92.71 -0.68 20.40 16 38 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.40 14.07 7.73 -92.71 -0.72 13.35 16 40 H 0.14 3.78 7.69 -2.91 -0.02 3.76 16 41 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.19 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -72.19 339.10 1.98 -70.21 By element: Atomic # 1 Polarization: 47.56 SS G_CDS: -1.18 Total: 46.38 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.91 Total: -4.70 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -4.72 Total: -137.36 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -72.19 1.98 -70.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714920375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.996 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds