Wall clock time and date at job start Tue Mar 31 2020 01:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.53006 * 109.46756 * 119.99574 * 2 1 3 5 5 C 1.52997 * 109.47219 * 66.13185 * 4 2 1 6 6 H 1.09007 * 109.47157 * 304.07594 * 5 4 2 7 7 C 1.53004 * 109.47108 * 64.06782 * 5 4 2 8 8 N 1.46506 * 109.47251 * 174.99933 * 7 5 4 9 9 C 1.36930 * 120.00022 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00252 * 359.97438 * 9 8 7 11 11 C 1.38815 * 120.00087 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99660 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00242 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46882 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46850 * 119.99845 * 13 11 9 16 16 H 1.48497 * 109.46775 * 240.00146 * 13 11 9 17 17 N 1.46494 * 109.47408 * 184.06953 * 5 4 2 18 18 C 1.34777 * 119.99801 * 88.10088 * 17 5 4 19 19 O 1.21698 * 120.00123 * 354.78922 * 18 17 5 20 20 C 1.46679 * 120.00132 * 174.79375 * 18 17 5 21 21 C 1.37869 * 126.23370 * 180.02562 * 20 18 17 22 22 C 1.39842 * 107.08642 * 180.02562 * 21 20 18 23 23 C 1.35457 * 107.86109 * 359.97438 * 22 21 20 24 24 N 1.35535 * 108.87189 * 0.23316 * 23 22 21 25 25 H 0.96995 * 125.67522 * 179.75266 * 24 23 22 26 26 H 1.09002 * 109.47407 * 303.69628 * 1 2 3 27 27 H 1.09001 * 109.46712 * 63.69357 * 1 2 3 28 28 H 1.08994 * 109.47448 * 183.69068 * 1 2 3 29 29 H 1.08998 * 109.47096 * 239.99117 * 2 1 3 30 30 H 1.09002 * 109.46871 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46770 * 299.99623 * 3 2 1 32 32 H 1.08993 * 109.47417 * 59.99364 * 3 2 1 33 33 H 1.08993 * 109.46877 * 306.13131 * 4 2 1 34 34 H 1.08996 * 109.46923 * 186.12943 * 4 2 1 35 35 H 1.09003 * 109.47512 * 295.00437 * 7 5 4 36 36 H 1.09001 * 109.47052 * 55.00320 * 7 5 4 37 37 H 0.97000 * 119.99574 * 0.02562 * 8 7 5 38 38 H 0.96999 * 119.99845 * 180.02562 * 12 11 9 39 39 H 0.96998 * 120.00005 * 268.10159 * 17 5 4 40 40 H 1.07999 * 126.46130 * 0.02562 * 21 20 18 41 41 H 1.07999 * 126.06887 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.56229 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6596 -2.2013 1.1748 6 1 0.5812 -2.2932 1.0454 7 6 2.3729 -2.8520 -0.0121 8 7 2.1042 -4.2922 -0.0136 9 6 2.6423 -5.0881 -0.9893 10 1 3.2645 -4.6541 -1.7580 11 6 2.3873 -6.4526 -0.9910 12 7 1.6277 -6.9812 -0.0550 13 14 3.1208 -7.5383 -2.3224 14 1 3.9291 -6.7064 -3.2498 15 1 3.9879 -8.5696 -1.6982 16 1 2.0279 -8.2015 -3.0780 17 7 2.0618 -2.8719 2.4136 18 6 1.2209 -2.9033 3.4664 19 8 0.1678 -2.2949 3.4225 20 6 1.5749 -3.6708 4.6652 21 6 0.8153 -3.7916 5.8094 22 6 1.5289 -4.6084 6.6921 23 6 2.6861 -4.9648 6.0849 24 7 2.7284 -4.3977 4.8546 25 1 3.4506 -4.4900 4.2137 26 1 -0.3634 0.5701 0.8550 27 1 -0.3633 0.4554 -0.9213 28 1 -0.3634 -1.0255 0.0661 29 1 1.8933 -0.5140 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.5897 -0.2746 2.1358 34 1 3.1243 -0.6272 1.3060 35 1 2.0076 -2.4132 -0.9406 36 1 3.4464 -2.6828 0.0720 37 1 1.5450 -4.6819 0.6766 38 1 1.4498 -7.9348 -0.0560 39 1 2.9332 -3.2932 2.4762 40 1 -0.1492 -3.3405 5.9900 41 1 1.2134 -4.9028 7.6821 42 1 3.4521 -5.5943 6.5130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715383119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:31 Heat of formation + Delta-G solvation = -20.826710 kcal Electronic energy + Delta-G solvation = -22123.072709 eV Core-core repulsion = 18909.532526 eV Total energy + Delta-G solvation = -3213.540183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17226 -40.47618 -38.41583 -36.37217 -35.19550 -33.09067 -31.94020 -31.02960 -29.56075 -28.01618 -27.24017 -24.83646 -24.06325 -22.47108 -21.37424 -21.03336 -20.63856 -19.99756 -19.04757 -17.34684 -17.04098 -16.48972 -16.24003 -15.93497 -15.38292 -15.17226 -15.05825 -14.76429 -14.55031 -14.37049 -14.24074 -13.93816 -13.46773 -13.40795 -13.17186 -13.14911 -12.95562 -12.82203 -12.65067 -12.21620 -12.03604 -11.92007 -11.79330 -11.57981 -11.39259 -11.15679 -10.93796 -10.11013 -9.92765 -9.14543 -9.03149 -7.96144 -5.26140 0.50740 1.46224 1.47920 1.57312 1.87249 2.09818 2.29096 2.42626 2.54192 3.38162 3.67864 3.81703 3.98275 4.06358 4.16748 4.17341 4.33727 4.38721 4.45123 4.55036 4.55925 4.74267 4.80988 4.88954 4.92276 4.98625 5.04314 5.11656 5.12041 5.14213 5.28442 5.33982 5.46019 5.48550 5.50625 5.56079 5.78341 5.97297 6.23858 6.46958 6.61571 7.14794 7.31311 8.04143 8.28342 9.26827 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.009240 B = 0.006797 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.687366 B = 4118.417845 C = 6645.308550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.107 4.107 5 C 0.145 3.855 6 H 0.064 0.936 7 C 0.147 3.853 8 N -0.742 5.742 9 C -0.241 4.241 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.972 3.028 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.299 1.299 17 N -0.706 5.706 18 C 0.585 3.415 19 O -0.576 6.576 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.226 4.226 23 C 0.039 3.961 24 N -0.530 5.530 25 H 0.426 0.574 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.372 0.628 38 H 0.249 0.751 39 H 0.403 0.597 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 11.075 9.141 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.146 4.146 5 C 0.041 3.959 6 H 0.082 0.918 7 C 0.020 3.980 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.098 0.902 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.801 3.199 14 H -0.188 1.188 15 H -0.220 1.220 16 H -0.226 1.226 17 N -0.356 5.356 18 C 0.374 3.626 19 O -0.456 6.456 20 C -0.197 4.197 21 C -0.155 4.155 22 C -0.249 4.249 23 C -0.098 4.098 24 N -0.126 5.126 25 H 0.265 0.735 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.204 0.796 38 H 0.058 0.942 39 H 0.238 0.762 40 H 0.156 0.844 41 H 0.184 0.816 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.040 11.507 8.753 15.311 hybrid contribution 0.357 -1.352 -0.722 1.574 sum 5.397 10.154 8.030 14.026 Atomic orbital electron populations 1.21858 0.95762 1.00896 1.01882 1.21148 0.95638 0.97240 0.97493 1.21773 1.01284 0.94428 1.02109 1.21871 1.01659 0.92398 0.98702 1.21213 0.99389 0.92595 0.82742 0.91770 1.21162 0.97534 0.83885 0.95418 1.42535 1.60441 1.02893 1.32620 1.19660 1.23264 0.89650 1.04723 0.90231 1.25543 1.01530 0.98396 1.01075 1.69847 1.43726 1.11391 1.36934 0.85096 0.77250 0.78787 0.78734 1.18841 1.21980 1.22625 1.45760 1.19477 1.57249 1.13064 1.17387 0.83369 0.79601 0.82217 1.90764 1.25749 1.46721 1.82397 1.20323 0.92893 1.08258 0.98178 1.21504 0.99977 1.01473 0.92575 1.21202 0.96319 1.05221 1.02180 1.22758 1.01340 1.00817 0.84899 1.42104 1.16601 1.37982 1.15875 0.73526 0.92909 0.91609 0.94583 0.90783 0.91896 0.91755 0.92748 0.92441 0.90293 0.94113 0.94283 0.79588 0.94171 0.76188 0.84438 0.81638 0.77180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.05 71.98 0.65 -3.22 16 2 C -0.10 -2.35 2.78 -10.79 -0.03 -2.38 16 3 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 4 C -0.11 -2.92 4.47 30.60 0.14 -2.78 16 5 C 0.15 4.94 2.08 44.99 0.09 5.03 16 6 H 0.06 2.59 5.77 -2.38 -0.01 2.58 16 7 C 0.15 5.52 5.45 86.38 0.47 5.99 16 8 N -0.74 -36.25 5.43 -343.43 -1.87 -38.12 16 9 C -0.24 -12.95 9.99 84.04 0.84 -12.11 16 10 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 11 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 12 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 13 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 16 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 17 N -0.71 -23.42 4.48 -446.50 -2.00 -25.42 16 18 C 0.58 21.50 7.77 86.45 0.67 22.17 16 19 O -0.58 -24.85 16.55 -4.34 -0.07 -24.92 16 20 C -0.08 -2.66 7.05 40.35 0.28 -2.37 16 21 C -0.13 -3.84 10.65 22.57 0.24 -3.60 16 22 C -0.23 -5.17 10.81 22.01 0.24 -4.93 16 23 C 0.04 0.77 11.89 83.48 0.99 1.77 16 24 N -0.53 -12.87 5.99 -183.62 -1.10 -13.97 16 25 H 0.43 8.74 8.20 -92.71 -0.76 7.98 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.12 6.36 -2.39 -0.02 1.11 16 29 H 0.07 1.88 6.37 -2.39 -0.02 1.86 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.54 6.66 -2.39 -0.02 1.52 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.37 20.06 7.33 -92.71 -0.68 19.38 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.40 11.99 7.78 -92.71 -0.72 11.27 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 42 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.72 347.01 1.87 -68.85 By element: Atomic # 1 Polarization: 47.93 SS G_CDS: -1.12 Total: 46.81 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.72 Total: -2.06 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -4.69 Total: -135.82 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.72 1.87 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715383119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.028 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds