Wall clock time and date at job start Tue Mar 31 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.52994 * 109.47404 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47404 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47153 * 54.99686 * 5 4 3 7 7 C 1.53000 * 109.47060 * 175.00005 * 5 4 3 8 8 N 1.46507 * 109.46803 * 175.00213 * 7 5 4 9 9 C 1.36934 * 119.99498 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00844 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99803 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99884 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00444 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46538 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47025 * 119.99713 * 13 11 9 16 16 H 1.48493 * 109.47434 * 240.00484 * 13 11 9 17 17 N 1.46500 * 109.47007 * 294.99774 * 5 4 3 18 18 C 1.34777 * 120.00075 * 84.99755 * 17 5 4 19 19 O 1.21697 * 119.99928 * 0.02562 * 18 17 5 20 20 C 1.46681 * 120.00185 * 179.97438 * 18 17 5 21 21 C 1.37870 * 126.23248 * 179.69197 * 20 18 17 22 22 C 1.39835 * 107.08280 * 179.84642 * 21 20 18 23 23 C 1.35455 * 107.86383 * 0.41927 * 22 21 20 24 24 N 1.35531 * 108.87157 * 359.73875 * 23 22 21 25 25 H 0.96998 * 125.67546 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.47020 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46811 * 300.00217 * 1 2 3 28 28 H 1.08998 * 109.47136 * 60.00063 * 1 2 3 29 29 H 1.09000 * 109.46811 * 239.99783 * 2 1 3 30 30 H 1.08995 * 109.46965 * 120.00684 * 2 1 3 31 31 H 1.09000 * 109.46875 * 59.99811 * 3 2 1 32 32 H 1.09008 * 109.47017 * 300.00189 * 3 2 1 33 33 H 1.09000 * 109.47017 * 59.99643 * 4 3 2 34 34 H 1.09008 * 109.46970 * 299.99951 * 4 3 2 35 35 H 1.09008 * 109.47142 * 294.99397 * 7 5 4 36 36 H 1.08990 * 109.47170 * 54.99895 * 7 5 4 37 37 H 0.96994 * 119.99737 * 359.97438 * 8 7 5 38 38 H 0.96998 * 119.99867 * 179.97438 * 12 11 9 39 39 H 0.96997 * 120.00274 * 264.99726 * 17 5 4 40 40 H 1.08005 * 126.45727 * 359.96890 * 21 20 18 41 41 H 1.07996 * 126.06747 * 180.13725 * 22 21 20 42 42 H 1.07997 * 125.55959 * 179.70582 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4235 0.8423 7 6 5.6050 2.8866 0.1251 8 7 6.1032 4.2592 0.0060 9 6 7.4470 4.5092 0.0877 10 1 8.1397 3.6947 0.2396 11 6 7.9191 5.8097 -0.0257 12 7 7.0750 6.8024 -0.2113 13 14 9.7524 6.1509 0.0852 14 1 10.4816 4.8742 0.2939 15 1 10.2151 6.7842 -1.1758 16 1 10.0178 7.0651 1.2248 17 7 3.6921 3.5406 -1.2513 18 6 2.4747 4.1076 -1.3657 19 8 1.6980 4.0753 -0.4293 20 6 2.0864 4.7646 -2.6183 21 6 0.8786 5.3770 -2.8769 22 6 0.9394 5.8698 -4.1841 23 6 2.1528 5.5485 -4.6932 24 7 2.8593 4.8768 -3.7517 25 1 3.7599 4.5327 -3.8587 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9338 0.9285 0.8892 35 1 5.8904 2.4794 1.0951 36 1 6.0352 2.2739 -0.6670 37 1 5.4811 4.9907 -0.1308 38 1 7.4049 7.7112 -0.2901 39 1 4.3112 3.5667 -1.9975 40 1 0.0436 5.4621 -2.1971 41 1 0.1561 6.4068 -4.6983 42 1 2.5002 5.7881 -5.6873 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725228521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:42 Heat of formation + Delta-G solvation = -0.427918 kcal Electronic energy + Delta-G solvation = -22065.408882 eV Core-core repulsion = 18852.753257 eV Total energy + Delta-G solvation = -3212.655625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11564 -39.22629 -36.43485 -34.91575 -33.57321 -31.64874 -30.77573 -30.37970 -28.90846 -27.16471 -24.23533 -22.93042 -22.24841 -20.82025 -20.72362 -20.07452 -19.89381 -18.69562 -17.13454 -16.25223 -15.53655 -15.26409 -14.80526 -14.62267 -13.97302 -13.86322 -13.80570 -13.44064 -13.28954 -13.09948 -12.74376 -12.68929 -12.50349 -12.23272 -12.02117 -11.92058 -11.31104 -11.09837 -10.93905 -10.86044 -10.81321 -10.36728 -10.29960 -10.03665 -9.78303 -9.71794 -8.97981 -8.91421 -8.69767 -8.09625 -7.02024 -5.83423 -3.13877 1.67739 2.86439 3.22533 3.37576 3.43568 3.46053 3.47474 3.70265 4.50966 4.86204 5.07536 5.10072 5.11894 5.23235 5.40275 5.43641 5.47580 5.49245 5.50846 5.60020 5.83747 5.90288 5.94761 5.98070 6.04643 6.15816 6.16837 6.22716 6.24507 6.30357 6.42253 6.48905 6.63055 6.69154 6.78825 6.91785 7.03468 7.45657 7.63171 7.84941 8.33963 8.50735 9.45971 10.01634 10.37051 11.38620 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.005403 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.229908 B = 5181.097284 C = 7015.524611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.089 0.911 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.710 5.710 18 C 0.588 3.412 19 O -0.531 6.531 20 C -0.046 4.046 21 C -0.115 4.115 22 C -0.215 4.215 23 C 0.017 3.983 24 N -0.535 5.535 25 H 0.418 0.582 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.023 0.977 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.396 0.604 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -9.296 -7.535 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.165 4.165 5 C 0.035 3.965 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.360 5.360 18 C 0.375 3.625 19 O -0.408 6.408 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.240 4.240 23 C -0.119 4.119 24 N -0.131 5.131 25 H 0.255 0.745 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.230 0.770 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.625 -9.434 -6.784 16.437 hybrid contribution 1.668 0.507 -0.495 1.813 sum -9.957 -8.927 -7.279 15.225 Atomic orbital electron populations 1.21744 0.96212 1.00808 1.01950 1.21566 0.95686 0.97704 1.01268 1.21679 0.94656 0.95380 1.03345 1.21978 0.96216 0.96184 1.02141 1.21326 0.96013 0.92476 0.86729 0.89248 1.20977 0.89257 0.89356 0.98848 1.42372 1.05431 1.02011 1.87870 1.19262 0.83621 0.92524 1.42119 0.91072 1.24762 0.97708 0.95651 1.02648 1.69685 1.32818 0.99008 1.56273 0.86124 0.85039 0.77800 0.77239 1.20537 1.21897 1.21786 1.45848 1.15650 1.57378 1.17147 1.16997 0.81958 0.77711 0.85784 1.90816 1.51684 1.59709 1.38628 1.20584 0.94490 1.12065 0.88821 1.21261 0.96268 0.99985 0.96671 1.20842 0.98172 1.08694 0.96273 1.21984 0.93656 1.00984 0.95279 1.42079 1.15465 1.44127 1.11407 0.74466 0.93356 0.92747 0.92910 0.92705 0.92449 0.91437 0.91710 0.92082 0.91064 0.94761 0.95899 0.77990 0.93494 0.77004 0.83768 0.84237 0.81501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.44 5.93 -26.73 -0.16 -1.59 16 3 C -0.11 -1.56 3.81 -26.74 -0.10 -1.66 16 4 C -0.13 -1.71 4.89 -26.74 -0.13 -1.85 16 5 C 0.14 2.30 2.42 -67.93 -0.16 2.13 16 6 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 7 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 8 N -0.73 -17.83 5.43 -59.90 -0.33 -18.16 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 13 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 N -0.71 -11.29 4.47 -55.11 -0.25 -11.53 16 18 C 0.59 10.00 6.35 -12.85 -0.08 9.92 16 19 O -0.53 -10.28 14.02 5.19 0.07 -10.21 16 20 C -0.05 -0.70 7.06 -81.98 -0.58 -1.28 16 21 C -0.12 -1.67 10.65 -39.12 -0.42 -2.09 16 22 C -0.22 -2.60 10.81 -39.98 -0.43 -3.03 16 23 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 24 N -0.54 -6.61 5.99 -9.39 -0.06 -6.67 16 25 H 0.42 4.39 8.19 -40.82 -0.33 4.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 32 H 0.06 1.00 5.65 -51.92 -0.29 0.70 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.39 10.14 7.33 -40.82 -0.30 9.84 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.40 5.88 7.73 -40.82 -0.32 5.56 16 40 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 41 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -31.98 346.79 -8.46 -40.44 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -6.66 Total: 16.17 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.17 Total: -5.21 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.10 Total: -63.39 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.98 -8.46 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725228521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.007 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds