Wall clock time and date at job start Tue Mar 31 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47592 * 2 1 4 4 C 1.50709 * 109.46927 * 120.00402 * 2 1 3 5 5 C 1.35360 * 126.38627 * 324.68270 * 4 2 1 6 6 C 1.41501 * 105.50371 * 180.26765 * 5 4 2 7 7 C 1.47711 * 126.51816 * 180.02562 * 6 5 4 8 8 O 1.21569 * 119.99733 * 353.49731 * 7 6 5 9 9 N 1.34776 * 119.99925 * 173.49568 * 7 6 5 10 10 C 1.46494 * 120.00013 * 3.48282 * 9 7 6 11 11 C 1.46502 * 119.99677 * 183.48266 * 9 7 6 12 12 H 1.08998 * 109.47140 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.46967 * 239.99875 * 11 9 7 14 14 C 1.50700 * 109.46731 * 120.00224 * 11 9 7 15 15 H 1.07992 * 120.00315 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99657 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00051 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99835 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47102 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47166 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47067 * 300.00003 * 18 16 14 22 22 N 1.31801 * 106.96366 * 359.97438 * 6 5 4 23 23 N 1.28474 * 110.07425 * 0.02562 * 22 6 5 24 24 C 1.46505 * 124.88251 * 180.02562 * 23 22 6 25 25 H 1.09009 * 109.47100 * 299.99931 * 1 2 3 26 26 H 1.08998 * 109.47365 * 59.99328 * 1 2 3 27 27 H 1.09002 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47210 * 239.99778 * 2 1 3 29 29 H 1.09001 * 109.47850 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47314 * 300.00703 * 3 2 1 31 31 H 1.09009 * 109.46841 * 59.99911 * 3 2 1 32 32 H 1.07998 * 127.24704 * 0.24183 * 5 4 2 33 33 H 1.09004 * 109.46943 * 84.11205 * 10 9 7 34 34 H 1.09004 * 109.47353 * 204.10814 * 10 9 7 35 35 H 1.08995 * 109.47186 * 324.11141 * 10 9 7 36 36 H 1.09006 * 109.47061 * 60.00729 * 13 11 9 37 37 H 1.09002 * 109.47388 * 180.02562 * 13 11 9 38 38 H 1.08998 * 109.47437 * 300.00120 * 13 11 9 39 39 H 0.97002 * 120.00365 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.46558 * 269.95258 * 24 23 22 41 41 H 1.08997 * 109.47231 * 29.95213 * 24 23 22 42 42 H 1.09002 * 109.47017 * 149.95688 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4616 -0.6918 2.4578 6 6 2.2937 -1.4939 3.2741 7 6 2.0973 -1.7888 4.7081 8 8 1.2126 -1.2310 5.3278 9 7 2.8989 -2.6765 5.3295 10 6 4.0125 -3.2915 4.6030 11 6 2.6565 -3.0261 6.7313 12 1 1.7923 -2.4734 7.0995 13 6 3.8867 -2.6660 7.5668 14 6 2.3902 -4.5053 6.8412 15 1 2.4009 -5.1232 5.9555 16 6 2.1339 -5.0701 8.0727 17 7 2.1224 -4.3180 9.1514 18 14 1.8045 -6.9038 8.2090 19 1 2.9818 -7.6569 7.7069 20 1 1.5599 -7.2585 9.6301 21 1 0.6105 -7.2538 7.3983 22 7 3.2768 -1.9287 2.5114 23 7 3.1386 -1.4800 1.3155 24 6 4.0498 -1.7633 0.2039 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 0.5610 -0.1734 2.7520 33 1 4.8765 -2.6276 4.6328 34 1 4.2692 -4.2428 5.0692 35 1 3.7205 -3.4617 3.5668 36 1 4.0793 -1.5961 7.4874 37 1 3.7066 -2.9266 8.6098 38 1 4.7507 -3.2191 7.1985 39 1 1.9425 -4.7153 10.0179 40 1 4.8328 -1.0055 0.1738 41 1 4.5003 -2.7458 0.3446 42 1 3.4943 -1.7492 -0.7339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174188859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:30 Heat of formation + Delta-G solvation = 44.800143 kcal Electronic energy + Delta-G solvation = -22315.855842 eV Core-core repulsion = 19105.161453 eV Total energy + Delta-G solvation = -3210.694389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.52991 -38.61437 -35.90753 -35.18582 -33.42801 -32.61411 -29.82621 -29.13496 -27.39972 -27.15882 -25.87645 -25.13302 -23.32884 -22.47327 -20.53761 -19.76511 -18.18360 -16.91827 -16.38300 -16.27822 -15.76383 -15.15228 -14.68670 -14.22718 -14.17673 -13.97348 -13.80051 -13.32364 -12.93946 -12.74869 -12.62789 -12.40599 -12.30542 -12.08226 -11.79709 -11.54714 -11.46437 -11.41373 -11.08766 -10.99665 -10.78565 -10.60928 -10.22044 -10.08862 -10.05343 -9.13797 -9.01338 -8.83187 -8.73558 -8.35365 -7.43288 -5.99765 -4.07293 1.95321 2.40539 2.58104 3.33300 3.37693 3.40141 4.02371 4.16482 4.35911 4.44090 4.48002 4.60432 4.82916 4.94454 5.08284 5.13504 5.23167 5.31007 5.38309 5.45176 5.58638 5.63513 5.68856 5.89418 5.93985 5.99266 6.18835 6.24134 6.35040 6.54587 6.72042 6.86086 6.92812 7.02251 7.17645 7.56566 7.63727 7.80398 8.08554 8.19178 8.28714 8.65542 8.91417 9.17239 9.58674 11.05575 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.004072 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.330160 B = 6874.910446 C = 6986.885627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.021 4.021 3 C -0.143 4.143 4 C 0.009 3.991 5 C -0.177 4.177 6 C 0.004 3.996 7 C 0.585 3.415 8 O -0.549 6.549 9 N -0.577 5.577 10 C 0.084 3.916 11 C 0.257 3.743 12 H 0.064 0.936 13 C -0.145 4.145 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 N -0.260 5.260 23 N -0.293 5.293 24 C 0.088 3.912 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.011 0.989 37 H 0.093 0.907 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 7.498 -20.984 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.201 4.201 4 C -0.115 4.115 5 C -0.205 4.205 6 C -0.156 4.156 7 C 0.369 3.631 8 O -0.426 6.426 9 N -0.306 5.306 10 C -0.060 4.060 11 C 0.157 3.843 12 H 0.082 0.918 13 C -0.203 4.203 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 N -0.095 5.095 23 N -0.080 5.080 24 C -0.053 4.053 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.030 0.970 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.741 7.062 -20.484 21.987 hybrid contribution -0.634 -0.665 0.018 0.919 sum 3.107 6.397 -20.466 21.666 Atomic orbital electron populations 1.21826 0.93186 1.02616 1.02496 1.19621 0.96692 0.95284 0.92518 1.21843 1.00960 0.94757 1.02550 1.21267 0.91426 1.00836 0.97953 1.21434 1.03067 1.04901 0.91072 1.22326 0.95057 1.02366 0.95890 1.17005 0.82345 0.80377 0.83344 1.90726 1.34051 1.52376 1.65450 1.48119 1.28283 1.39871 1.14376 1.21846 0.88793 0.98222 0.97124 1.18987 0.95577 0.95706 0.74001 0.91818 1.22072 0.97834 0.96128 1.04313 1.21302 1.48866 0.92684 0.93459 0.92269 1.24885 0.95064 0.98226 0.95570 1.69874 1.48916 1.35294 0.98563 0.86549 0.78781 0.85031 0.76978 1.20270 1.21187 1.20261 1.73871 1.24107 1.20486 0.90996 1.45453 1.19357 1.35120 1.08118 1.22051 0.92975 1.04004 0.86241 0.91625 0.92009 0.92154 0.90513 0.92820 0.91935 0.91771 0.82520 0.94308 0.90798 0.90439 0.96977 0.88814 0.95160 0.92676 0.90119 0.88639 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.79 37.16 0.33 -0.85 16 2 C -0.02 -0.18 3.10 -91.77 -0.28 -0.46 16 3 C -0.14 -1.09 9.17 37.15 0.34 -0.75 16 4 C 0.01 0.12 5.84 -82.21 -0.48 -0.36 16 5 C -0.18 -2.89 9.97 -39.37 -0.39 -3.28 16 6 C 0.00 0.08 6.82 -82.77 -0.56 -0.49 16 7 C 0.58 13.95 7.68 -12.39 -0.10 13.85 16 8 O -0.55 -14.75 16.26 5.31 0.09 -14.66 16 9 N -0.58 -13.83 2.75 -176.43 -0.49 -14.32 16 10 C 0.08 1.69 8.57 59.84 0.51 2.20 16 11 C 0.26 7.00 2.63 -69.08 -0.18 6.82 16 12 H 0.06 1.97 6.90 -51.93 -0.36 1.62 16 13 C -0.14 -3.68 8.97 37.16 0.33 -3.35 16 14 C -0.52 -14.82 7.95 -34.44 -0.27 -15.09 16 15 H 0.06 1.65 7.43 -52.49 -0.39 1.26 16 16 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 N -0.26 -4.40 8.50 33.42 0.28 -4.11 16 23 N -0.29 -3.82 3.70 -63.84 -0.24 -4.05 16 24 C 0.09 0.66 11.10 59.85 0.66 1.33 16 25 H 0.06 0.58 7.35 -51.92 -0.38 0.20 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.51 6.86 -51.93 -0.36 0.15 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.16 2.45 7.47 -52.49 -0.39 2.06 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.51 7.11 -51.93 -0.37 1.14 16 35 H 0.08 1.45 5.35 -51.93 -0.28 1.17 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 38 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.44 6.88 -51.93 -0.36 0.08 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -33.97 339.98 -6.35 -40.32 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.54 Total: -1.01 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.19 Total: 1.30 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.19 Total: -47.65 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.97 -6.35 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174188859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.116 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds