Wall clock time and date at job start Tue Mar 31 2020 01:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47592 * 2 1 4 4 C 1.50709 * 109.46927 * 120.00402 * 2 1 3 5 5 C 1.35360 * 126.38627 * 324.68270 * 4 2 1 6 6 C 1.41501 * 105.50371 * 180.26765 * 5 4 2 7 7 C 1.47711 * 126.51816 * 180.02562 * 6 5 4 8 8 O 1.21569 * 119.99733 * 353.49731 * 7 6 5 9 9 N 1.34776 * 119.99925 * 173.49568 * 7 6 5 10 10 C 1.46494 * 120.00013 * 3.48282 * 9 7 6 11 11 C 1.46502 * 119.99677 * 183.48266 * 9 7 6 12 12 H 1.08998 * 109.47140 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.46967 * 239.99875 * 11 9 7 14 14 C 1.50700 * 109.46731 * 120.00224 * 11 9 7 15 15 H 1.07992 * 120.00315 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99657 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00051 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99835 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47102 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47166 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47067 * 300.00003 * 18 16 14 22 22 N 1.31801 * 106.96366 * 359.97438 * 6 5 4 23 23 N 1.28474 * 110.07425 * 0.02562 * 22 6 5 24 24 C 1.46505 * 124.88251 * 180.02562 * 23 22 6 25 25 H 1.09009 * 109.47100 * 299.99931 * 1 2 3 26 26 H 1.08998 * 109.47365 * 59.99328 * 1 2 3 27 27 H 1.09002 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47210 * 239.99778 * 2 1 3 29 29 H 1.09001 * 109.47850 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47314 * 300.00703 * 3 2 1 31 31 H 1.09009 * 109.46841 * 59.99911 * 3 2 1 32 32 H 1.07998 * 127.24704 * 0.24183 * 5 4 2 33 33 H 1.09004 * 109.46943 * 84.11205 * 10 9 7 34 34 H 1.09004 * 109.47353 * 204.10814 * 10 9 7 35 35 H 1.08995 * 109.47186 * 324.11141 * 10 9 7 36 36 H 1.09006 * 109.47061 * 60.00729 * 13 11 9 37 37 H 1.09002 * 109.47388 * 180.02562 * 13 11 9 38 38 H 1.08998 * 109.47437 * 300.00120 * 13 11 9 39 39 H 0.97002 * 120.00365 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.46558 * 269.95258 * 24 23 22 41 41 H 1.08997 * 109.47231 * 29.95213 * 24 23 22 42 42 H 1.09002 * 109.47017 * 149.95688 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4616 -0.6918 2.4578 6 6 2.2937 -1.4939 3.2741 7 6 2.0973 -1.7888 4.7081 8 8 1.2126 -1.2310 5.3278 9 7 2.8989 -2.6765 5.3295 10 6 4.0125 -3.2915 4.6030 11 6 2.6565 -3.0261 6.7313 12 1 1.7923 -2.4734 7.0995 13 6 3.8867 -2.6660 7.5668 14 6 2.3902 -4.5053 6.8412 15 1 2.4009 -5.1232 5.9555 16 6 2.1339 -5.0701 8.0727 17 7 2.1224 -4.3180 9.1514 18 14 1.8045 -6.9038 8.2090 19 1 2.9818 -7.6569 7.7069 20 1 1.5599 -7.2585 9.6301 21 1 0.6105 -7.2538 7.3983 22 7 3.2768 -1.9287 2.5114 23 7 3.1386 -1.4800 1.3155 24 6 4.0498 -1.7633 0.2039 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 0.5610 -0.1734 2.7520 33 1 4.8765 -2.6276 4.6328 34 1 4.2692 -4.2428 5.0692 35 1 3.7205 -3.4617 3.5668 36 1 4.0793 -1.5961 7.4874 37 1 3.7066 -2.9266 8.6098 38 1 4.7507 -3.2191 7.1985 39 1 1.9425 -4.7153 10.0179 40 1 4.8328 -1.0055 0.1738 41 1 4.5003 -2.7458 0.3446 42 1 3.4943 -1.7492 -0.7339 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174188859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:29 Heat of formation + Delta-G solvation = 22.871812 kcal Electronic energy + Delta-G solvation = -22316.806725 eV Core-core repulsion = 19105.161453 eV Total energy + Delta-G solvation = -3211.645273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.71438 -40.47210 -37.18879 -36.68079 -34.92469 -34.25503 -31.56353 -30.48700 -28.27415 -28.00318 -27.58282 -27.31306 -24.70788 -23.52710 -22.20107 -20.98299 -19.71535 -18.49068 -18.05637 -17.58937 -17.20951 -17.01929 -16.09740 -15.94800 -15.45344 -15.02161 -14.73418 -14.60418 -14.35297 -14.00996 -13.91365 -13.55221 -13.48796 -13.35005 -13.18438 -12.99791 -12.88360 -12.75249 -12.72789 -12.50079 -12.22033 -12.12930 -12.07654 -11.74333 -11.48692 -11.19928 -10.93551 -10.52837 -10.05938 -9.89269 -9.34638 -8.15232 -6.32427 0.60026 1.15023 1.41045 1.44194 1.51834 1.61801 2.27738 2.46868 2.48640 3.12094 3.33280 3.54979 3.86186 4.06038 4.21360 4.36133 4.43235 4.50419 4.56967 4.65320 4.70179 4.73334 4.75218 4.75618 4.84730 4.87885 5.00848 5.01115 5.04160 5.04424 5.16856 5.34779 5.40415 5.44258 5.46590 5.60094 5.64678 5.93709 6.02931 6.13595 6.71957 6.72986 6.94677 7.26698 7.42865 8.89597 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.004072 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.330160 B = 6874.910446 C = 6986.885627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.141 4.141 4 C 0.035 3.965 5 C -0.202 4.202 6 C -0.036 4.036 7 C 0.575 3.425 8 O -0.597 6.597 9 N -0.585 5.585 10 C 0.091 3.909 11 C 0.260 3.740 12 H 0.012 0.988 13 C -0.130 4.130 14 C -0.542 4.542 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.277 1.277 22 N -0.265 5.265 23 N -0.278 5.278 24 C 0.071 3.929 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.150 0.850 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 6.849 -24.690 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.091 4.091 5 C -0.230 4.230 6 C -0.193 4.193 7 C 0.363 3.637 8 O -0.478 6.478 9 N -0.315 5.315 10 C -0.052 4.052 11 C 0.159 3.841 12 H 0.030 0.970 13 C -0.188 4.188 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.203 1.203 22 N -0.102 5.102 23 N -0.066 5.066 24 C -0.067 4.067 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.036 0.964 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.076 6.405 -24.220 25.562 hybrid contribution -1.012 -0.383 1.024 1.490 sum 4.064 6.022 -23.196 24.307 Atomic orbital electron populations 1.21853 0.93064 1.02264 1.03107 1.19858 0.96739 0.95734 0.91384 1.21840 1.01229 0.93864 1.02970 1.21801 0.90090 0.99117 0.98090 1.21520 1.03457 1.05615 0.92446 1.21712 0.97819 1.05670 0.94126 1.17630 0.81380 0.79504 0.85226 1.90669 1.35932 1.54053 1.67170 1.48131 1.29473 1.40318 1.13533 1.21940 0.87960 0.97878 0.97377 1.18655 0.94364 0.94847 0.76257 0.97028 1.21862 0.97595 0.96614 1.02750 1.21501 1.49696 0.93081 0.93801 0.92345 1.25761 0.94459 1.03068 0.95026 1.70014 1.49115 1.37302 0.99062 0.85452 0.78901 0.79160 0.77156 1.18664 1.20490 1.20265 1.73685 1.23289 1.20812 0.92417 1.46000 1.19583 1.33179 1.07855 1.22650 0.93280 1.05281 0.85461 0.93203 0.89296 0.93017 0.87019 0.92376 0.89303 0.93660 0.83269 0.92753 0.91363 0.88880 0.96394 0.90842 0.93580 0.92446 0.87860 0.87850 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.79 71.98 0.63 -1.39 16 2 C -0.02 -0.23 3.10 -11.54 -0.04 -0.27 16 3 C -0.14 -1.65 9.17 71.98 0.66 -0.99 16 4 C 0.03 0.81 5.84 41.40 0.24 1.05 16 5 C -0.20 -6.74 9.97 22.41 0.22 -6.52 16 6 C -0.04 -1.43 6.82 42.46 0.29 -1.14 16 7 C 0.58 29.03 7.68 86.75 0.67 29.70 16 8 O -0.60 -34.70 16.26 -3.93 -0.06 -34.77 16 9 N -0.59 -29.22 2.75 -830.38 -2.29 -31.50 16 10 C 0.09 3.66 8.57 127.77 1.09 4.75 16 11 C 0.26 14.87 2.63 44.24 0.12 14.99 16 12 H 0.01 0.78 6.90 -2.39 -0.02 0.77 16 13 C -0.13 -6.81 8.97 71.98 0.65 -6.16 16 14 C -0.54 -31.50 7.95 25.60 0.20 -31.30 16 15 H 0.06 3.32 7.43 -2.91 -0.02 3.30 16 16 C 0.02 0.95 5.30 84.66 0.45 1.40 16 17 N -0.92 -54.67 11.32 21.45 0.24 -54.43 16 18 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 N -0.26 -8.68 8.50 -48.18 -0.41 -9.09 16 23 N -0.28 -6.47 3.70 -355.90 -1.32 -7.78 16 24 C 0.07 0.74 11.10 127.77 1.42 2.16 16 25 H 0.05 0.85 7.35 -2.38 -0.02 0.83 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 0.81 6.86 -2.39 -0.02 0.79 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.15 5.01 7.47 -2.91 -0.02 4.99 16 33 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.07 2.78 7.11 -2.39 -0.02 2.77 16 35 H 0.09 3.44 5.35 -2.39 -0.01 3.42 16 36 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 4.16 6.07 -2.39 -0.01 4.14 16 38 H 0.05 2.21 7.67 -2.39 -0.02 2.19 16 39 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.13 0.44 6.88 -2.39 -0.02 0.43 16 Total: -1.00 -79.15 339.98 5.80 -73.35 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.00 Total: 11.34 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.61 Total: 6.27 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.77 Total: -102.80 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.06 Total: -34.77 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -79.15 5.80 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174188859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.224 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds