Wall clock time and date at job start Tue Mar 31 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 C 1.50698 * 109.47139 * 240.00217 * 2 1 3 5 5 O 1.21296 * 119.99980 * 255.73391 * 4 2 1 6 6 N 1.34776 * 120.00150 * 75.73576 * 4 2 1 7 7 C 1.37095 * 120.00223 * 184.22899 * 6 4 2 8 8 H 1.07997 * 120.00051 * 12.50661 * 7 6 4 9 9 C 1.38948 * 120.00045 * 192.51220 * 7 6 4 10 10 N 1.31413 * 120.00396 * 11.71302 * 9 7 6 11 11 Si 1.86802 * 119.99896 * 191.71654 * 9 7 6 12 12 H 1.48504 * 109.47090 * 59.99599 * 11 9 7 13 13 H 1.48503 * 109.47315 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47078 * 300.00060 * 11 9 7 15 15 C 1.46499 * 119.99898 * 4.22612 * 6 4 2 16 16 C 1.47207 * 109.47045 * 91.42316 * 15 6 4 17 17 N 4.24623 * 118.98011 * 321.09252 * 2 1 3 18 18 N 1.46904 * 109.47215 * 119.99902 * 2 1 3 19 19 C 1.47444 * 110.99622 * 183.20128 * 18 2 1 20 20 H 1.09002 * 110.02389 * 117.26596 * 19 18 2 21 21 C 1.52995 * 109.89026 * 356.14736 * 19 18 2 22 22 C 1.54319 * 107.22791 * 236.74260 * 19 18 2 23 23 C 1.55136 * 103.02403 * 337.71863 * 22 19 18 24 24 C 1.47846 * 110.99884 * 62.35807 * 18 2 1 25 25 H 1.09002 * 110.46179 * 27.48475 * 24 18 2 26 26 C 1.52998 * 110.37246 * 265.19538 * 24 18 2 27 27 H 1.08999 * 109.46805 * 172.70768 * 1 2 3 28 28 H 1.09000 * 109.47111 * 292.70700 * 1 2 3 29 29 H 1.08996 * 109.47162 * 52.70782 * 1 2 3 30 30 H 0.96994 * 120.00137 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.47568 * 211.41852 * 15 6 4 32 32 H 1.08994 * 109.47255 * 331.42277 * 15 6 4 33 33 H 1.09007 * 109.47205 * 284.54870 * 21 19 18 34 34 H 1.08996 * 109.47154 * 44.55459 * 21 19 18 35 35 H 1.09003 * 109.47129 * 164.55416 * 21 19 18 36 36 H 1.09002 * 110.70861 * 96.10261 * 22 19 18 37 37 H 1.09005 * 110.70592 * 219.33024 * 22 19 18 38 38 H 1.08997 * 110.99296 * 153.74490 * 23 22 19 39 39 H 1.08999 * 110.99085 * 277.56512 * 23 22 19 40 40 H 1.09007 * 109.46551 * 308.81009 * 26 24 18 41 41 H 1.08992 * 109.47587 * 68.81304 * 26 24 18 42 42 H 1.09001 * 109.46749 * 188.81524 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4786 -1.8348 -1.1419 6 7 1.9859 -0.0963 -2.4293 7 6 2.3615 -0.7727 -3.5610 8 1 2.4997 -1.8433 -3.5294 9 6 2.5646 -0.0808 -4.7488 10 7 2.6242 1.2319 -4.7426 11 14 2.7527 -1.0167 -6.3544 12 1 1.5263 -1.8145 -6.6090 13 1 2.9568 -0.0548 -7.4672 14 1 3.9240 -1.9251 -6.2636 15 6 1.5338 1.2941 -2.5231 16 6 2.6929 2.1952 -2.4158 17 7 3.5873 2.8905 -2.3330 18 7 2.0197 -0.6925 1.1995 19 6 3.4916 -0.6459 1.2725 20 1 3.8041 -0.0980 2.1615 21 6 4.0538 0.0301 0.0203 22 6 3.9917 -2.1037 1.3515 23 6 2.7547 -2.8688 1.8911 24 6 1.5926 -2.1079 1.2056 25 1 1.4522 -2.4679 0.1864 26 6 0.3012 -2.2711 2.0097 27 1 -0.3633 -1.0194 -0.1304 28 1 -0.3633 0.3967 0.9480 29 1 -0.3633 0.6226 -0.8175 30 1 2.7656 1.7149 -5.5718 31 1 1.0388 1.4514 -3.4814 32 1 0.8343 1.5040 -1.7140 33 1 3.9980 -0.6603 -0.8214 34 1 3.4706 0.9234 -0.2031 35 1 5.0933 0.3087 0.1935 36 1 4.2704 -2.4697 0.3633 37 1 4.8289 -2.1869 2.0446 38 1 2.7751 -3.9131 1.5796 39 1 2.6882 -2.7878 2.9760 40 1 0.4207 -1.8043 2.9875 41 1 -0.5212 -1.7937 1.4772 42 1 0.0844 -3.3316 2.1375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413305621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:59 Heat of formation + Delta-G solvation = 41.965118 kcal Electronic energy + Delta-G solvation = -24183.840114 eV Core-core repulsion = 20973.022790 eV Total energy + Delta-G solvation = -3210.817325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69302 -37.75368 -35.66322 -34.27768 -33.26785 -32.40490 -31.62037 -28.52532 -27.59342 -27.40807 -25.34567 -23.75729 -22.43142 -20.41947 -19.95240 -18.43155 -17.86319 -16.60469 -16.28334 -15.79716 -15.40802 -14.74667 -14.23394 -13.96429 -13.80433 -13.17868 -13.03222 -12.92143 -12.57782 -12.44149 -12.05974 -11.99607 -11.89288 -11.55705 -11.48588 -11.30367 -11.18784 -11.14557 -10.99594 -10.69559 -10.53140 -10.46393 -10.42388 -10.30262 -10.13690 -9.95176 -9.86909 -9.24083 -8.98806 -8.15470 -7.43744 -6.50415 -4.06691 3.06594 3.17018 3.18935 3.50179 3.76933 4.03476 4.11400 4.36060 4.76810 4.87862 5.10611 5.15021 5.25195 5.40913 5.48423 5.58123 5.65054 5.72932 5.81113 5.94952 5.97212 5.99899 6.04482 6.10817 6.15362 6.20791 6.23943 6.31652 6.40991 6.47943 6.51995 6.63827 6.66155 6.77441 6.94097 7.02139 7.39225 7.47960 7.55708 7.82819 8.23046 8.81546 8.94636 9.14121 9.66431 10.49773 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.006852 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.815769 B = 4085.409170 C = 4374.795556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 H 0.093 0.907 4 C 0.442 3.558 5 O -0.570 6.570 6 N -0.441 5.441 7 C -0.304 4.304 8 H 0.108 0.892 9 C 0.029 3.971 10 N -0.889 5.889 11 Si 0.934 3.066 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.214 3.786 16 C 0.254 3.746 17 N -0.480 5.480 18 N -0.497 5.497 19 C 0.079 3.921 20 H 0.072 0.928 21 C -0.195 4.195 22 C -0.128 4.128 23 C -0.115 4.115 24 C 0.044 3.956 25 H 0.109 0.891 26 C -0.140 4.140 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.274 0.726 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -2.735 8.349 10.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 H 0.111 0.889 4 C 0.231 3.769 5 O -0.456 6.456 6 N -0.161 5.161 7 C -0.432 4.432 8 H 0.126 0.874 9 C -0.173 4.173 10 N -0.529 5.529 11 Si 0.760 3.240 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.200 1.200 15 C 0.087 3.913 16 C -0.064 4.064 17 N -0.161 5.161 18 N -0.221 5.221 19 C -0.029 4.029 20 H 0.090 0.910 21 C -0.253 4.253 22 C -0.166 4.166 23 C -0.153 4.153 24 C -0.063 4.063 25 H 0.127 0.873 26 C -0.198 4.198 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.339 -1.855 8.770 9.959 hybrid contribution 0.368 -0.743 -1.748 1.935 sum -3.971 -2.598 7.021 8.474 Atomic orbital electron populations 1.21988 0.93369 1.02657 1.02190 1.21912 0.96302 0.98880 0.88671 0.88946 1.20899 0.83203 0.88479 0.84364 1.90437 1.50399 1.20323 1.84411 1.43812 1.56811 1.09100 1.06342 1.19758 1.44303 0.93769 0.85324 0.87411 1.25274 0.96268 0.95643 1.00083 1.69689 1.48536 1.06090 1.28601 0.85861 0.79074 0.78815 0.80218 1.19743 1.20913 1.19950 1.19073 0.88441 0.79189 1.04627 1.29154 0.94807 0.92910 0.89497 1.80891 1.10145 1.11762 1.13307 1.64045 1.09400 1.14438 1.34214 1.22180 0.87261 0.95966 0.97497 0.90997 1.22999 1.00214 1.02064 0.99987 1.22792 0.97077 0.95032 1.01716 1.22546 0.95050 0.98723 0.98946 1.23067 0.93837 0.87478 1.01910 0.87325 1.21937 0.97460 1.00171 1.00224 0.91821 0.91369 0.91692 0.91444 0.84557 0.90149 0.88499 0.92209 0.93618 0.90140 0.92570 0.91764 0.92206 0.92943 0.92532 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.63 37.16 0.28 -1.77 16 2 C 0.06 0.95 1.49 -68.86 -0.10 0.84 16 3 H 0.09 1.62 5.18 -51.93 -0.27 1.35 16 4 C 0.44 9.15 3.49 -10.99 -0.04 9.11 16 5 O -0.57 -13.10 9.73 5.54 0.05 -13.05 16 6 N -0.44 -9.70 2.59 -117.94 -0.30 -10.00 16 7 C -0.30 -7.47 9.45 -14.93 -0.14 -7.61 16 8 H 0.11 2.79 7.29 -52.49 -0.38 2.41 16 9 C 0.03 0.70 5.18 -17.47 -0.09 0.61 16 10 N -0.89 -21.59 8.49 55.50 0.47 -21.11 16 11 Si 0.93 19.51 29.57 -169.99 -5.03 14.48 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 C 0.21 4.19 4.80 -6.83 -0.03 4.15 16 16 C 0.25 5.59 12.15 -20.76 -0.25 5.34 16 17 N -0.48 -11.39 18.54 42.15 0.78 -10.61 16 18 N -0.50 -8.35 4.86 -209.04 -1.02 -9.37 16 19 C 0.08 1.37 3.72 -66.73 -0.25 1.12 16 20 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 21 C -0.20 -3.84 7.63 37.15 0.28 -3.55 16 22 C -0.13 -2.11 5.95 -24.91 -0.15 -2.25 16 23 C -0.11 -1.73 6.50 -24.60 -0.16 -1.89 16 24 C 0.04 0.72 1.84 -66.19 -0.12 0.60 16 25 H 0.11 2.11 4.86 -52.00 -0.25 1.85 16 26 C -0.14 -1.88 9.16 37.16 0.34 -1.54 16 27 H 0.06 0.93 6.06 -51.93 -0.31 0.62 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.06 0.84 6.18 -51.93 -0.32 0.52 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.14 2.77 6.25 -51.93 -0.32 2.44 16 32 H 0.08 1.26 4.50 -51.93 -0.23 1.03 16 33 H 0.10 2.22 4.45 -51.93 -0.23 1.99 16 34 H 0.06 1.20 4.33 -51.93 -0.22 0.98 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.53 6.73 -51.93 -0.35 1.18 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.73 5.50 -51.93 -0.29 0.44 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -27.15 308.73 -6.52 -33.67 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.70 Total: 8.19 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.43 Total: 3.15 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.07 Total: -51.10 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.05 Total: -13.05 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.15 -6.52 -33.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413305621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.633 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds