Wall clock time and date at job start Tue Mar 31 2020 01:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 C 1.50701 * 109.47244 * 239.99846 * 2 1 3 5 5 H 1.08004 * 119.99688 * 245.34714 * 4 2 1 6 6 C 1.37873 * 119.99877 * 65.35142 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.14432 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.14461 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46905 * 109.47300 * 119.99778 * 2 1 3 13 13 C 1.46901 * 111.00046 * 275.00188 * 12 2 1 14 14 C 1.50692 * 109.47286 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00246 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.46503 * 120.00278 * 180.02562 * 16 14 13 18 18 C 1.47202 * 109.47228 * 59.99669 * 17 16 14 19 19 N 6.94944 * 125.86403 * 105.91966 * 2 1 3 20 20 C 1.53004 * 109.46873 * 300.00209 * 17 16 14 21 21 C 1.53004 * 109.47330 * 179.97438 * 20 17 16 22 22 C 1.53006 * 109.47090 * 59.99456 * 21 20 17 23 23 C 1.52999 * 109.47161 * 300.00370 * 22 21 20 24 24 C 1.52996 * 109.47330 * 180.02562 * 17 16 14 25 25 H 1.09000 * 109.46822 * 54.98577 * 1 2 3 26 26 H 1.09001 * 109.46672 * 174.98293 * 1 2 3 27 27 H 1.09002 * 109.47278 * 294.98252 * 1 2 3 28 28 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 29 29 H 1.00898 * 111.00111 * 151.05010 * 12 2 1 30 30 H 1.09000 * 109.47011 * 300.00258 * 13 12 2 31 31 H 1.09009 * 109.46886 * 59.99731 * 13 12 2 32 32 H 0.97004 * 120.00448 * 0.02562 * 16 14 13 33 33 H 1.09000 * 109.46881 * 299.99710 * 20 17 16 34 34 H 1.08994 * 109.47627 * 59.99553 * 20 17 16 35 35 H 1.09009 * 109.46461 * 300.00069 * 21 20 17 36 36 H 1.08994 * 109.47365 * 180.02562 * 21 20 17 37 37 H 1.08993 * 109.46734 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46546 * 60.00450 * 22 21 20 39 39 H 1.09000 * 109.47461 * 300.00284 * 23 22 21 40 40 H 1.09003 * 109.47075 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47101 * 299.99473 * 24 17 16 42 42 H 1.09000 * 109.47501 * 60.00258 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5802 -1.6362 -1.1336 6 6 1.7927 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5939 8 14 2.2879 -1.1286 -4.0100 9 1 1.2113 -2.0868 -4.3678 10 1 2.5009 -0.1812 -5.1334 11 1 3.5452 -1.8730 -3.7451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5216 3.5560 15 8 2.8678 -1.6984 3.4703 16 7 2.7273 0.1204 4.7327 17 6 3.2186 -0.6030 5.9081 18 6 4.5632 -1.1341 5.6307 19 7 5.6014 -1.5448 5.4159 20 6 2.2696 -1.7595 6.2286 21 6 2.7831 -2.5155 7.4558 22 6 2.8482 -1.5629 8.6513 23 6 3.7972 -0.4064 8.3307 24 6 3.2827 0.3498 7.1035 25 1 -0.3633 0.5897 -0.8417 26 1 -0.3633 -1.0238 -0.0899 27 1 -0.3634 0.4340 0.9315 28 1 1.0464 1.3715 -3.4728 29 1 2.9174 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 2.5026 1.0616 4.8015 33 1 1.2740 -1.3663 6.4340 34 1 2.2235 -2.4384 5.3772 35 1 3.7787 -2.9088 7.2499 36 1 2.1073 -3.3397 7.6839 37 1 3.2144 -2.1013 9.5253 38 1 1.8527 -1.1696 8.8571 39 1 4.7928 -0.7996 8.1248 40 1 3.8433 0.2726 9.1823 41 1 3.9586 1.1739 6.8754 42 1 2.2869 0.7426 7.3088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:13 Heat of formation + Delta-G solvation = -21.629032 kcal Electronic energy + Delta-G solvation = -21902.050473 eV Core-core repulsion = 18688.475499 eV Total energy + Delta-G solvation = -3213.574974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66177 -38.43278 -35.81107 -35.60832 -34.33287 -32.49303 -31.22494 -30.33926 -28.85868 -25.71819 -24.82817 -23.44655 -23.22665 -21.31713 -20.18681 -19.76356 -17.57602 -17.24776 -16.54824 -16.04267 -15.35595 -14.95714 -14.93730 -14.58750 -14.14384 -13.74598 -13.51746 -13.38326 -13.26663 -13.12477 -12.61088 -12.52724 -12.43569 -12.20999 -12.00116 -11.80235 -11.48167 -11.36874 -11.03616 -10.91781 -10.86502 -10.71645 -10.62354 -10.44391 -10.24634 -10.04639 -9.41999 -9.34710 -8.87792 -8.48394 -7.32859 -6.06721 -4.09725 2.41398 2.74473 2.78624 3.31883 3.33075 3.37446 3.41996 3.74511 4.26314 4.35912 4.41230 4.60344 4.73725 4.78366 5.02322 5.08862 5.14862 5.26441 5.27803 5.34412 5.40263 5.48816 5.65536 5.72707 5.75290 5.80803 5.85598 5.88364 6.04490 6.10256 6.28585 6.77947 7.03768 7.11471 7.31365 7.44568 7.54637 7.78492 7.81053 8.14103 8.30752 8.34034 8.63136 9.00647 9.56047 11.02379 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.003326 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.278035 B = 8415.905312 C = 8636.069922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.211 3.789 3 H 0.009 0.991 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.045 3.955 14 C 0.514 3.486 15 O -0.510 6.510 16 N -0.733 5.733 17 C 0.282 3.718 18 C 0.210 3.790 19 N -0.420 5.420 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.342 0.658 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.408 0.592 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 2.123 23.159 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H 0.026 0.974 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.088 4.088 14 C 0.301 3.699 15 O -0.382 6.382 16 N -0.389 5.389 17 C 0.192 3.808 18 C -0.110 4.110 19 N -0.096 5.096 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.157 4.157 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.104 0.523 22.731 22.763 hybrid contribution 0.501 0.763 -1.120 1.444 sum 1.605 1.285 21.611 21.708 Atomic orbital electron populations 1.21661 0.97986 0.99948 0.98151 1.19162 0.92383 0.92723 0.85343 0.97377 1.21226 1.35738 1.08430 0.90488 0.92021 1.24905 0.95122 0.94744 0.99055 1.69938 1.43090 1.16135 1.23820 0.86540 0.79059 0.79700 0.82300 1.20457 1.21344 1.19923 1.60510 1.33519 1.31628 1.04938 1.21818 1.01385 0.94990 0.90621 1.21277 0.76581 0.88032 0.83999 1.90685 1.47586 1.15824 1.84110 1.46241 1.69311 1.14381 1.08974 1.17629 0.83444 0.93360 0.86406 1.29249 0.94580 0.93732 0.93432 1.81179 1.12855 1.08310 1.07212 1.22025 0.97929 0.96807 1.00003 1.21578 1.01869 0.98306 0.94251 1.21597 0.99962 0.96373 0.97997 1.21565 0.99542 0.97684 0.97057 1.21846 1.03866 0.97259 0.92722 0.91566 0.94503 0.97311 0.92893 0.83963 0.93150 0.88558 0.75637 0.89689 0.88504 0.92046 0.90834 0.91610 0.91247 0.91830 0.90658 0.90319 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 9.21 37.16 0.34 -2.51 16 2 C 0.21 5.27 2.47 -68.86 -0.17 5.10 16 3 H 0.01 0.23 7.78 -51.93 -0.40 -0.18 16 4 C -0.52 -14.44 8.50 -34.44 -0.29 -14.73 16 5 H 0.06 1.73 7.68 -52.48 -0.40 1.32 16 6 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 7 N -0.89 -25.35 11.98 55.43 0.66 -24.69 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.67 -14.65 5.93 -109.22 -0.65 -15.29 16 13 C 0.04 0.75 5.96 -4.98 -0.03 0.72 16 14 C 0.51 7.88 7.28 -10.99 -0.08 7.80 16 15 O -0.51 -9.79 13.41 5.56 0.07 -9.72 16 16 N -0.73 -7.69 5.08 -50.23 -0.26 -7.94 16 17 C 0.28 2.83 0.77 -134.60 -0.10 2.73 16 18 C 0.21 2.92 10.26 -20.73 -0.21 2.71 16 19 N -0.42 -7.00 18.54 42.19 0.78 -6.22 16 20 C -0.13 -1.28 4.63 -26.73 -0.12 -1.41 16 21 C -0.12 -1.03 5.70 -26.73 -0.15 -1.18 16 22 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 23 C -0.12 -0.75 5.70 -26.70 -0.15 -0.90 16 24 C -0.12 -0.73 4.83 -26.70 -0.13 -0.86 16 25 H 0.07 1.71 6.84 -51.93 -0.35 1.35 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.01 0.17 7.35 -51.93 -0.38 -0.21 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.34 7.84 7.96 -39.29 -0.31 7.53 16 30 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.10 1.45 7.36 -51.92 -0.38 1.07 16 32 H 0.41 2.83 8.47 -40.82 -0.35 2.49 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.32 6.17 -51.93 -0.32 1.00 16 35 H 0.06 0.63 7.23 -51.92 -0.38 0.26 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.51 7.22 -51.93 -0.38 0.13 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -33.09 337.90 -7.26 -40.35 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.59 Total: 3.64 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.36 Total: -1.76 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.54 Total: -54.14 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.09 -7.26 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.723 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds