Wall clock time and date at job start Tue Mar 31 2020 01:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 C 1.50701 * 109.47244 * 239.99846 * 2 1 3 5 5 H 1.08004 * 119.99688 * 245.34714 * 4 2 1 6 6 C 1.37873 * 119.99877 * 65.35142 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.14432 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.14461 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46905 * 109.47300 * 119.99778 * 2 1 3 13 13 C 1.46901 * 111.00046 * 275.00188 * 12 2 1 14 14 C 1.50692 * 109.47286 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00246 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00066 * 180.02562 * 14 13 12 17 17 C 1.46503 * 120.00278 * 180.02562 * 16 14 13 18 18 C 1.47202 * 109.47228 * 59.99669 * 17 16 14 19 19 N 6.94944 * 125.86403 * 105.91966 * 2 1 3 20 20 C 1.53004 * 109.46873 * 300.00209 * 17 16 14 21 21 C 1.53004 * 109.47330 * 179.97438 * 20 17 16 22 22 C 1.53006 * 109.47090 * 59.99456 * 21 20 17 23 23 C 1.52999 * 109.47161 * 300.00370 * 22 21 20 24 24 C 1.52996 * 109.47330 * 180.02562 * 17 16 14 25 25 H 1.09000 * 109.46822 * 54.98577 * 1 2 3 26 26 H 1.09001 * 109.46672 * 174.98293 * 1 2 3 27 27 H 1.09002 * 109.47278 * 294.98252 * 1 2 3 28 28 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 29 29 H 1.00898 * 111.00111 * 151.05010 * 12 2 1 30 30 H 1.09000 * 109.47011 * 300.00258 * 13 12 2 31 31 H 1.09009 * 109.46886 * 59.99731 * 13 12 2 32 32 H 0.97004 * 120.00448 * 0.02562 * 16 14 13 33 33 H 1.09000 * 109.46881 * 299.99710 * 20 17 16 34 34 H 1.08994 * 109.47627 * 59.99553 * 20 17 16 35 35 H 1.09009 * 109.46461 * 300.00069 * 21 20 17 36 36 H 1.08994 * 109.47365 * 180.02562 * 21 20 17 37 37 H 1.08993 * 109.46734 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46546 * 60.00450 * 22 21 20 39 39 H 1.09000 * 109.47461 * 300.00284 * 23 22 21 40 40 H 1.09003 * 109.47075 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47101 * 299.99473 * 24 17 16 42 42 H 1.09000 * 109.47501 * 60.00258 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5802 -1.6362 -1.1336 6 6 1.7927 -0.1786 -2.4797 7 7 1.2154 0.9975 -2.5939 8 14 2.2879 -1.1286 -4.0100 9 1 1.2113 -2.0868 -4.3678 10 1 2.5009 -0.1812 -5.1334 11 1 3.5452 -1.8730 -3.7451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5216 3.5560 15 8 2.8678 -1.6984 3.4703 16 7 2.7273 0.1204 4.7327 17 6 3.2186 -0.6030 5.9081 18 6 4.5632 -1.1341 5.6307 19 7 5.6014 -1.5448 5.4159 20 6 2.2696 -1.7595 6.2286 21 6 2.7831 -2.5155 7.4558 22 6 2.8482 -1.5629 8.6513 23 6 3.7972 -0.4064 8.3307 24 6 3.2827 0.3498 7.1035 25 1 -0.3633 0.5897 -0.8417 26 1 -0.3633 -1.0238 -0.0899 27 1 -0.3634 0.4340 0.9315 28 1 1.0464 1.3715 -3.4728 29 1 2.9174 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 2.5026 1.0616 4.8015 33 1 1.2740 -1.3663 6.4340 34 1 2.2235 -2.4384 5.3772 35 1 3.7787 -2.9088 7.2499 36 1 2.1073 -3.3397 7.6839 37 1 3.2144 -2.1013 9.5253 38 1 1.8527 -1.1696 8.8571 39 1 4.7928 -0.7996 8.1248 40 1 3.8433 0.2726 9.1823 41 1 3.9586 1.1739 6.8754 42 1 2.2869 0.7426 7.3088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:12 Heat of formation + Delta-G solvation = -45.896051 kcal Electronic energy + Delta-G solvation = -21903.102770 eV Core-core repulsion = 18688.475499 eV Total energy + Delta-G solvation = -3214.627271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63757 -39.49516 -37.38651 -36.88329 -35.33251 -34.44613 -31.83268 -31.57283 -30.30703 -27.48260 -26.55286 -24.33414 -23.88534 -22.26741 -21.67516 -21.04662 -18.96991 -18.34862 -17.84913 -17.31991 -16.78623 -16.46768 -15.84972 -15.65961 -15.38563 -15.20650 -14.77626 -14.47640 -14.40340 -14.18296 -14.02489 -13.64794 -13.52414 -13.20545 -13.15144 -12.98336 -12.81777 -12.74019 -12.67254 -12.33796 -12.26529 -12.09201 -11.98194 -11.67712 -11.45748 -11.28956 -10.94342 -10.65413 -10.52670 -10.35407 -9.07129 -8.18501 -6.28042 1.34576 1.40089 1.41631 1.50753 1.58397 1.68248 2.26778 2.41656 2.82371 3.13392 3.58660 3.64329 3.70015 3.86816 4.10008 4.20527 4.22130 4.44904 4.47612 4.50786 4.51620 4.70444 4.84895 4.86450 4.95536 5.07592 5.13089 5.16951 5.18424 5.19184 5.30820 5.36809 5.39018 5.42734 5.51070 5.64779 5.82744 6.15233 6.37013 6.42517 6.50818 6.75915 6.93002 7.23426 7.41554 8.89746 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.035968 B = 0.003326 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.278035 B = 8415.905312 C = 8636.069922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.217 3.783 3 H -0.013 1.013 4 C -0.544 4.544 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.043 3.957 14 C 0.518 3.482 15 O -0.554 6.554 16 N -0.708 5.708 17 C 0.277 3.723 18 C 0.226 3.774 19 N -0.480 5.480 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.330 0.670 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.429 0.571 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 3.556 25.117 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 H 0.005 0.995 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.200 1.200 12 N -0.312 5.312 13 C -0.090 4.090 14 C 0.305 3.695 15 O -0.430 6.430 16 N -0.365 5.365 17 C 0.187 3.813 18 C -0.093 4.093 19 N -0.156 5.156 20 C -0.165 4.165 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.150 4.150 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.269 0.731 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.125 2.005 24.732 24.813 hybrid contribution 0.882 0.319 -1.659 1.906 sum 0.758 2.324 23.073 23.202 Atomic orbital electron populations 1.21483 0.97162 0.99070 0.98863 1.18969 0.92926 0.91331 0.85918 0.99505 1.21543 1.36109 1.08368 0.92231 0.93243 1.25607 0.95124 0.95546 1.01650 1.70022 1.43608 1.17052 1.24548 0.85619 0.78645 0.78574 0.79081 1.19982 1.20478 1.19952 1.60402 1.32912 1.32678 1.05201 1.21913 1.03146 0.94442 0.89453 1.21009 0.76247 0.87279 0.84933 1.90694 1.49721 1.17701 1.84912 1.45946 1.67570 1.15279 1.07693 1.18158 0.81247 0.94532 0.87343 1.30141 0.95061 0.92348 0.91725 1.81169 1.15078 1.10235 1.09153 1.22004 0.99325 0.96155 0.99024 1.21581 1.00257 0.99178 0.94927 1.21597 1.01348 0.95768 0.96664 1.21605 0.98135 0.98185 0.97984 1.21969 1.06430 0.96275 0.90316 0.93731 0.95521 0.94134 0.92666 0.85239 0.91972 0.86347 0.73071 0.86879 0.92588 0.94961 0.90114 0.91030 0.88777 0.94436 0.87957 0.89164 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.09 9.21 71.98 0.66 -4.43 16 2 C 0.22 10.88 2.47 44.17 0.11 10.99 16 3 H -0.01 -0.68 7.78 -2.39 -0.02 -0.70 16 4 C -0.54 -30.68 8.50 25.60 0.22 -30.46 16 5 H 0.05 2.84 7.68 -2.91 -0.02 2.82 16 6 C 0.02 1.16 5.29 84.65 0.45 1.60 16 7 N -0.91 -52.14 11.98 21.45 0.26 -51.88 16 8 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 12 N -0.68 -29.77 5.93 -499.45 -2.96 -32.73 16 13 C 0.04 1.37 5.96 85.55 0.51 1.88 16 14 C 0.52 15.41 7.28 87.65 0.64 16.05 16 15 O -0.55 -21.68 13.41 -3.02 -0.04 -21.73 16 16 N -0.71 -13.17 5.08 -431.21 -2.19 -15.36 16 17 C 0.28 5.04 0.77 1.80 0.00 5.04 16 18 C 0.23 6.34 10.26 89.43 0.92 7.25 16 19 N -0.48 -16.66 18.54 20.02 0.37 -16.29 16 20 C -0.13 -2.33 4.63 30.60 0.14 -2.19 16 21 C -0.12 -1.92 5.70 30.60 0.17 -1.74 16 22 C -0.12 -1.06 5.92 30.60 0.18 -0.88 16 23 C -0.12 -1.12 5.70 30.61 0.17 -0.95 16 24 C -0.11 -0.94 4.83 30.61 0.15 -0.79 16 25 H 0.04 2.29 6.84 -2.39 -0.02 2.27 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.61 7.35 -2.39 -0.02 1.59 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.33 15.60 7.96 -89.70 -0.71 14.88 16 30 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 31 H 0.12 3.24 7.36 -2.38 -0.02 3.23 16 32 H 0.43 4.32 8.47 -92.71 -0.79 3.53 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.54 6.17 -2.39 -0.01 1.53 16 35 H 0.03 0.69 7.23 -2.38 -0.02 0.67 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.04 0.55 7.22 -2.39 -0.02 0.54 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -75.24 337.90 1.32 -73.92 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.47 Total: 16.22 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.33 Total: 1.37 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -4.52 Total: -116.26 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -75.24 1.32 -73.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.023 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds