Wall clock time and date at job start Tue Mar 31 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.50703 * 109.47140 * 120.00357 * 2 1 3 5 5 O 1.21279 * 119.99926 * 119.99398 * 4 2 1 6 6 N 1.34775 * 119.99773 * 299.99798 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47164 * 300.00241 * 8 7 6 10 10 C 1.52999 * 109.46623 * 60.00141 * 8 7 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.50706 * 109.46960 * 239.99775 * 2 1 3 20 20 C 1.39867 * 126.04361 * 300.03468 * 19 2 1 21 21 N 1.30835 * 108.20689 * 179.97438 * 20 19 2 22 22 N 1.40089 * 108.20176 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.03560 * 179.97438 * 22 21 20 24 24 C 1.34947 * 107.92409 * 359.76196 * 22 21 20 25 25 H 1.09000 * 109.47160 * 59.99562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46719 * 299.99841 * 1 2 3 28 28 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 30 30 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 31 31 H 1.09000 * 109.47140 * 60.00051 * 9 8 7 32 32 H 1.09001 * 109.47230 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47375 * 300.00034 * 9 8 7 34 34 H 1.09001 * 109.47362 * 60.00551 * 10 8 7 35 35 H 1.09002 * 109.46716 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47486 * 299.99829 * 10 8 7 37 37 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 38 38 H 1.08007 * 125.89392 * 359.97438 * 20 19 2 39 39 H 1.09004 * 109.46206 * 89.97981 * 23 22 21 40 40 H 1.08995 * 109.47060 * 209.97864 * 23 22 21 41 41 H 1.08998 * 109.47393 * 329.98279 * 23 22 21 42 42 H 1.08008 * 126.12590 * 180.23865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6853 -0.2194 4.9000 9 6 2.1964 1.2226 4.8999 10 6 0.1553 -0.2183 4.9000 11 6 2.1866 -0.9306 6.1304 12 1 2.8069 -1.8092 6.0312 13 6 1.8544 -0.4591 7.3827 14 7 1.0995 0.6111 7.5034 15 14 2.4764 -1.3402 8.9078 16 1 3.3005 -2.5075 8.5035 17 1 3.3027 -0.4076 9.7159 18 1 1.3212 -1.8056 9.7165 19 6 2.0323 -0.7105 -1.2305 20 6 1.7729 -2.0407 -1.5763 21 7 2.3767 -2.2938 -2.7090 22 7 3.0400 -1.1306 -3.1208 23 6 3.8395 -0.9799 -4.3391 24 6 2.8084 -0.1722 -2.1995 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1495 0.5388 2.5436 29 1 3.2847 -0.9416 3.6507 30 1 1.8309 -1.9685 3.6505 31 1 1.8334 1.7367 4.0100 32 1 1.8332 1.7369 5.7897 33 1 3.2864 1.2218 4.8998 34 1 -0.2088 -1.2457 4.9001 35 1 -0.2075 0.2954 5.7903 36 1 -0.2077 0.2958 4.0101 37 1 0.8655 0.9426 8.3844 38 1 1.1771 -2.7384 -1.0065 39 1 3.1985 -0.6463 -5.1553 40 1 4.6248 -0.2433 -4.1695 41 1 4.2899 -1.9378 -4.5990 42 1 3.1787 0.8420 -2.2287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337316708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:14 Heat of formation + Delta-G solvation = 30.233196 kcal Electronic energy + Delta-G solvation = -21940.074502 eV Core-core repulsion = 18728.748442 eV Total energy + Delta-G solvation = -3211.326059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25557 -39.16591 -36.35368 -34.29376 -33.26824 -32.49505 -30.74072 -29.38477 -26.56716 -25.73589 -25.69739 -25.09764 -23.63813 -21.14910 -20.76743 -19.39612 -18.73553 -17.08900 -16.44549 -15.74042 -15.42144 -15.14035 -14.90132 -14.56811 -14.26204 -13.87441 -13.34757 -13.11341 -12.93430 -12.86205 -12.66151 -12.64206 -12.16120 -12.04796 -11.65335 -11.51829 -11.29105 -11.17091 -10.84852 -10.64633 -10.46387 -10.35784 -10.18197 -9.60717 -9.46207 -9.34629 -9.12227 -8.75296 -8.41402 -8.33393 -8.23305 -6.00661 -4.10363 1.89754 2.51404 2.85891 3.19250 3.28183 3.36814 3.41767 3.93725 4.41312 4.44740 4.76825 4.92783 4.95169 5.05600 5.17680 5.23358 5.26219 5.35237 5.52550 5.73449 5.74116 5.94420 6.07824 6.26353 6.29832 6.38092 6.54504 6.69923 6.83555 6.85048 6.96867 6.99446 7.04894 7.11672 7.39033 7.58140 7.71583 7.73829 8.03523 8.12617 8.22806 8.41410 8.83154 8.91671 9.55492 11.00728 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.038575 B = 0.003369 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.690216 B = 8309.636215 C = 8556.272107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 H 0.096 0.904 4 C 0.507 3.493 5 O -0.544 6.544 6 N -0.718 5.718 7 C 0.133 3.867 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.208 4.208 20 C 0.083 3.917 21 N -0.305 5.305 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.055 3.945 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.396 0.604 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.006 0.994 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.259 0.741 38 H 0.178 0.822 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 3.457 -18.847 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.056 4.056 3 H 0.114 0.886 4 C 0.292 3.708 5 O -0.422 6.422 6 N -0.369 5.369 7 C 0.010 3.990 8 C 0.055 3.945 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.220 4.220 20 C -0.103 4.103 21 N -0.126 5.126 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.091 4.091 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.232 0.768 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.195 0.805 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.666 1.987 -19.804 19.915 hybrid contribution 0.019 0.612 1.579 1.694 sum 0.685 2.599 -18.225 18.423 Atomic orbital electron populations 1.21749 0.92621 1.02863 1.02339 1.19552 0.96891 0.99193 0.89932 0.88561 1.20483 0.80708 0.84982 0.84621 1.90668 1.38156 1.26538 1.86843 1.46304 1.52799 1.31811 1.05966 1.21673 0.98005 0.95749 0.83557 1.18352 0.92794 0.92714 0.90634 1.21825 0.98530 0.98409 1.00053 1.21823 0.97759 0.99166 1.00052 1.21048 1.31349 1.11978 0.89946 0.92429 1.24878 0.94896 0.94929 0.98836 1.69815 1.36858 1.22771 1.23063 0.86532 0.78642 0.79778 0.83036 1.19763 1.21096 1.21071 1.19489 1.08298 0.95430 0.98767 1.23621 0.98129 0.95700 0.92879 1.77341 1.13820 1.05686 1.15745 1.48345 1.40659 1.08318 1.19213 1.21776 0.94271 1.03928 0.83654 1.22207 1.00221 0.95606 0.91066 0.91797 0.92023 0.91735 0.76835 0.92958 0.92858 0.97471 0.89645 0.95519 0.95466 0.89668 0.97440 0.93104 0.80457 0.91080 0.89725 0.89489 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.98 37.16 0.33 -1.13 16 2 C -0.03 -0.41 3.09 -92.92 -0.29 -0.70 16 3 H 0.10 1.01 8.11 -51.93 -0.42 0.58 16 4 C 0.51 8.65 7.11 -10.98 -0.08 8.57 16 5 O -0.54 -11.47 15.37 5.56 0.09 -11.38 16 6 N -0.72 -12.53 4.85 -60.29 -0.29 -12.82 16 7 C 0.13 2.82 4.50 -4.04 -0.02 2.81 16 8 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 9 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 10 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 11 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.56 9.35 55.43 0.52 -23.04 16 15 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.21 -2.79 4.36 -105.05 -0.46 -3.25 16 20 C 0.08 1.23 10.77 -17.37 -0.19 1.04 16 21 N -0.30 -4.56 12.58 30.62 0.39 -4.18 16 22 N -0.38 -4.58 4.01 -68.16 -0.27 -4.86 16 23 C 0.11 0.74 11.47 59.85 0.69 1.43 16 24 C 0.05 0.63 11.38 -17.22 -0.20 0.43 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.69 8.02 -51.93 -0.42 0.28 16 27 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 28 H 0.40 6.19 5.58 -40.82 -0.23 5.96 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 32 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 36 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 38 H 0.18 2.49 8.06 -52.48 -0.42 2.07 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -31.71 340.95 -6.08 -37.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.57 Total: 4.31 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.05 Total: -6.71 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.34 Total: -44.89 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.71 -6.08 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337316708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.021 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds