Wall clock time and date at job start Tue Mar 31 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.50703 * 109.47140 * 120.00357 * 2 1 3 5 5 O 1.21279 * 119.99926 * 119.99398 * 4 2 1 6 6 N 1.34775 * 119.99773 * 299.99798 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47164 * 300.00241 * 8 7 6 10 10 C 1.52999 * 109.46623 * 60.00141 * 8 7 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.50706 * 109.46960 * 239.99775 * 2 1 3 20 20 C 1.39867 * 126.04361 * 300.03468 * 19 2 1 21 21 N 1.30835 * 108.20689 * 179.97438 * 20 19 2 22 22 N 1.40089 * 108.20176 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.03560 * 179.97438 * 22 21 20 24 24 C 1.34947 * 107.92409 * 359.76196 * 22 21 20 25 25 H 1.09000 * 109.47160 * 59.99562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46719 * 299.99841 * 1 2 3 28 28 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 29 29 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 30 30 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 31 31 H 1.09000 * 109.47140 * 60.00051 * 9 8 7 32 32 H 1.09001 * 109.47230 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47375 * 300.00034 * 9 8 7 34 34 H 1.09001 * 109.47362 * 60.00551 * 10 8 7 35 35 H 1.09002 * 109.46716 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47486 * 299.99829 * 10 8 7 37 37 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 38 38 H 1.08007 * 125.89392 * 359.97438 * 20 19 2 39 39 H 1.09004 * 109.46206 * 89.97981 * 23 22 21 40 40 H 1.08995 * 109.47060 * 209.97864 * 23 22 21 41 41 H 1.08998 * 109.47393 * 329.98279 * 23 22 21 42 42 H 1.08008 * 126.12590 * 180.23865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6853 -0.2194 4.9000 9 6 2.1964 1.2226 4.8999 10 6 0.1553 -0.2183 4.9000 11 6 2.1866 -0.9306 6.1304 12 1 2.8069 -1.8092 6.0312 13 6 1.8544 -0.4591 7.3827 14 7 1.0995 0.6111 7.5034 15 14 2.4764 -1.3402 8.9078 16 1 3.3005 -2.5075 8.5035 17 1 3.3027 -0.4076 9.7159 18 1 1.3212 -1.8056 9.7165 19 6 2.0323 -0.7105 -1.2305 20 6 1.7729 -2.0407 -1.5763 21 7 2.3767 -2.2938 -2.7090 22 7 3.0400 -1.1306 -3.1208 23 6 3.8395 -0.9799 -4.3391 24 6 2.8084 -0.1722 -2.1995 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.1495 0.5388 2.5436 29 1 3.2847 -0.9416 3.6507 30 1 1.8309 -1.9685 3.6505 31 1 1.8334 1.7367 4.0100 32 1 1.8332 1.7369 5.7897 33 1 3.2864 1.2218 4.8998 34 1 -0.2088 -1.2457 4.9001 35 1 -0.2075 0.2954 5.7903 36 1 -0.2077 0.2958 4.0101 37 1 0.8655 0.9426 8.3844 38 1 1.1771 -2.7384 -1.0065 39 1 3.1985 -0.6463 -5.1553 40 1 4.6248 -0.2433 -4.1695 41 1 4.2899 -1.9378 -4.5990 42 1 3.1787 0.8420 -2.2287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337316708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:13 Heat of formation + Delta-G solvation = 10.017402 kcal Electronic energy + Delta-G solvation = -21940.951124 eV Core-core repulsion = 18728.748442 eV Total energy + Delta-G solvation = -3212.202682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.20688 -40.56581 -38.08721 -35.33385 -34.88844 -33.50462 -32.48900 -30.29647 -27.51866 -27.50079 -27.29498 -26.85960 -24.80809 -22.19913 -21.82444 -20.63412 -20.47893 -18.32231 -17.76184 -17.37630 -16.63529 -16.39773 -16.30139 -16.07072 -15.25368 -15.06604 -14.78410 -14.67243 -14.35134 -13.93293 -13.82038 -13.56154 -13.33490 -13.20111 -13.12446 -12.98879 -12.68510 -12.56881 -12.46078 -12.40905 -12.20057 -12.12143 -11.44389 -11.42887 -11.20025 -10.71082 -10.56631 -10.37859 -10.27321 -9.82586 -9.27191 -8.00972 -6.16293 1.00278 1.41233 1.45586 1.54888 1.75064 1.81633 1.86008 2.43530 2.64808 3.22428 3.64595 3.89730 4.06277 4.26842 4.31379 4.42267 4.47051 4.48582 4.56589 4.58794 4.71632 4.76773 4.88688 4.90288 5.04868 5.07357 5.11160 5.16457 5.23940 5.24133 5.40600 5.43606 5.68286 5.69602 5.70465 5.71615 6.19893 6.22182 6.25862 6.46747 6.77290 6.82802 6.88432 7.48869 7.51401 8.97848 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.038575 B = 0.003369 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.690216 B = 8309.636215 C = 8556.272107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.019 4.019 3 H 0.130 0.870 4 C 0.506 3.494 5 O -0.589 6.589 6 N -0.710 5.710 7 C 0.150 3.850 8 C 0.052 3.948 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.943 3.057 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.234 4.234 20 C 0.062 3.938 21 N -0.342 5.342 22 N -0.383 5.383 23 C 0.094 3.906 24 C 0.068 3.932 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.409 0.591 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.260 0.740 38 H 0.167 0.833 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 5.534 -20.432 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.041 4.041 3 H 0.147 0.853 4 C 0.293 3.707 5 O -0.469 6.469 6 N -0.362 5.362 7 C 0.025 3.975 8 C 0.051 3.949 9 C -0.178 4.178 10 C -0.178 4.178 11 C -0.568 4.568 12 H 0.059 0.941 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.770 3.230 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.246 4.246 20 C -0.123 4.123 21 N -0.165 5.165 22 N -0.165 5.165 23 C -0.045 4.045 24 C -0.079 4.079 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.246 0.754 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.185 0.815 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.658 4.079 -21.410 21.805 hybrid contribution 0.069 -0.047 1.986 1.987 sum 0.726 4.032 -19.425 19.852 Atomic orbital electron populations 1.21757 0.91092 1.02494 1.03870 1.19539 0.97954 0.99814 0.86814 0.85271 1.21382 0.79482 0.84367 0.85457 1.90654 1.40146 1.28655 1.87449 1.46119 1.52962 1.31966 1.05145 1.21189 0.96663 0.94933 0.84676 1.18343 0.93317 0.93048 0.90160 1.21665 0.97821 0.97772 1.00556 1.21666 0.97003 0.98606 1.00538 1.21330 1.31637 1.12007 0.91810 0.94092 1.25420 0.95184 0.95606 1.00841 1.69909 1.37062 1.23202 1.23496 0.85746 0.78147 0.78735 0.80401 1.20231 1.20651 1.20684 1.19677 1.09910 0.95098 0.99919 1.23653 0.98718 0.96709 0.93269 1.77253 1.15130 1.07792 1.16292 1.48766 1.39954 1.07511 1.20273 1.22176 0.94954 1.04846 0.82556 1.22855 0.98342 0.96949 0.89753 0.89530 0.93442 0.90853 0.75379 0.94909 0.94904 0.94040 0.91934 0.96477 0.96517 0.91949 0.94038 0.93035 0.81549 0.89130 0.86717 0.89794 0.76908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.98 71.98 0.65 -1.85 16 2 C -0.02 -0.43 3.09 -12.28 -0.04 -0.46 16 3 H 0.13 2.09 8.11 -2.39 -0.02 2.07 16 4 C 0.51 16.70 7.11 87.66 0.62 17.32 16 5 O -0.59 -25.08 15.37 -3.03 -0.05 -25.13 16 6 N -0.71 -23.80 4.85 -463.05 -2.25 -26.05 16 7 C 0.15 6.41 4.50 86.38 0.39 6.80 16 8 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 9 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 10 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 11 C -0.53 -28.25 8.01 25.60 0.21 -28.04 16 12 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 13 C 0.03 1.54 5.15 84.65 0.44 1.98 16 14 N -0.90 -47.70 9.35 21.45 0.20 -47.50 16 15 Si 0.94 42.88 29.54 68.60 2.03 44.90 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 C -0.23 -5.86 4.36 -20.14 -0.09 -5.95 16 20 C 0.06 1.84 10.77 85.24 0.92 2.76 16 21 N -0.34 -10.18 12.58 -57.02 -0.72 -10.90 16 22 N -0.38 -8.34 4.01 -369.56 -1.48 -9.83 16 23 C 0.09 1.06 11.47 127.77 1.47 2.53 16 24 C 0.07 1.33 11.38 83.54 0.95 2.28 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.01 8.02 -2.39 -0.02 0.99 16 27 H 0.07 1.23 7.57 -2.39 -0.02 1.21 16 28 H 0.41 11.58 5.58 -92.71 -0.52 11.06 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 32 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 36 H 0.04 1.49 6.86 -2.39 -0.02 1.47 16 37 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 38 H 0.17 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.64 340.95 4.87 -65.77 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.49 Total: 18.36 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 6.64 Total: -9.64 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -4.25 Total: -94.27 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.64 4.87 -65.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337316708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.790 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds