Wall clock time and date at job start Tue Mar 31 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99875 * 2 1 4 4 C 1.46895 * 111.00043 * 123.95726 * 2 1 3 5 5 C 1.52998 * 109.47478 * 170.00078 * 4 2 1 6 6 C 1.52997 * 109.47676 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47626 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00225 * 270.00270 * 7 6 5 9 9 C 1.50697 * 109.47043 * 264.63152 * 8 7 6 10 10 H 1.08006 * 120.00153 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99789 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46895 * 60.00504 * 13 11 9 15 15 H 1.48499 * 109.47055 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47248 * 300.00063 * 13 11 9 17 17 C 1.34777 * 120.00304 * 89.99690 * 7 6 5 18 18 O 1.21631 * 119.99700 * 3.75759 * 17 7 6 19 19 C 1.47267 * 120.00345 * 183.75411 * 17 7 6 20 20 C 1.46686 * 126.94224 * 164.65168 * 19 17 7 21 21 C 1.34483 * 106.33197 * 180.02562 * 20 19 17 22 22 N 1.36446 * 108.85872 * 359.97438 * 21 20 19 23 23 H 0.96997 * 124.85237 * 179.97438 * 22 21 20 24 24 C 1.34661 * 110.29708 * 0.26603 * 22 21 20 25 25 H 1.09001 * 109.47037 * 296.04526 * 1 2 3 26 26 H 1.08998 * 109.46996 * 56.04672 * 1 2 3 27 27 H 1.09000 * 109.47032 * 176.04374 * 1 2 3 28 28 H 1.09005 * 109.47072 * 183.95415 * 3 2 1 29 29 H 1.08999 * 109.47380 * 303.95363 * 3 2 1 30 30 H 1.08998 * 109.47192 * 63.95913 * 3 2 1 31 31 H 1.09000 * 109.47729 * 49.99937 * 4 2 1 32 32 H 1.09007 * 109.47141 * 289.99822 * 4 2 1 33 33 H 1.09005 * 109.47551 * 59.99653 * 5 4 2 34 34 H 1.09003 * 109.47110 * 300.00330 * 5 4 2 35 35 H 1.08997 * 109.46998 * 59.99972 * 6 5 4 36 36 H 1.09007 * 109.47176 * 299.99887 * 6 5 4 37 37 H 1.08999 * 109.46781 * 24.62682 * 8 7 6 38 38 H 1.09001 * 109.47720 * 144.62629 * 8 7 6 39 39 H 0.97001 * 120.00229 * 179.97438 * 12 11 9 40 40 H 1.08001 * 126.83409 * 0.02562 * 20 19 17 41 41 H 1.08002 * 125.57390 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.80549 * 179.69189 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0528 -1.7527 2.1554 7 7 5.4976 -1.9345 1.9950 8 6 6.0139 -3.1062 1.2830 9 6 6.3597 -4.1854 2.2763 10 1 6.2103 -4.0154 3.3324 11 6 6.8669 -5.3899 1.8370 12 7 7.0483 -5.5972 0.5510 13 14 7.2962 -6.7274 3.0683 14 1 6.0799 -7.1071 3.8308 15 1 7.8194 -7.9152 2.3467 16 1 8.3312 -6.2231 4.0062 17 6 6.3519 -1.0239 2.5023 18 8 5.9272 -0.0874 3.1519 19 6 7.7995 -1.1627 2.2702 20 6 8.8265 -0.1338 2.4661 21 6 9.9990 -0.7014 2.1319 22 7 9.7715 -1.9911 1.7491 23 1 10.4577 -2.6129 1.4605 24 6 8.4573 -2.2754 1.8232 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5897 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2248 2.0628 33 1 3.9910 0.0193 0.9323 34 1 3.7024 -1.4965 0.0450 35 1 3.5664 -2.7273 2.1938 36 1 3.8550 -1.2111 3.0805 37 1 5.2546 -3.4763 0.5940 38 1 6.9070 -2.8273 0.7238 39 1 7.4055 -6.4444 0.2419 40 1 8.6717 0.8781 2.8103 41 1 10.9633 -0.2159 2.1624 42 1 8.0005 -3.2218 1.5736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068307583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:57 Heat of formation + Delta-G solvation = 27.805538 kcal Electronic energy + Delta-G solvation = -22228.959529 eV Core-core repulsion = 19017.528199 eV Total energy + Delta-G solvation = -3211.431330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44601 -38.47767 -37.41334 -35.08566 -33.15236 -31.61805 -30.08207 -28.62627 -27.54617 -27.29442 -25.74493 -23.19203 -22.81625 -20.94835 -20.41941 -19.91232 -18.60495 -17.07107 -16.49808 -15.71850 -15.62932 -15.20427 -14.86203 -14.59259 -14.24225 -13.97292 -13.66908 -13.28039 -13.15048 -12.69453 -12.38060 -12.35025 -12.15530 -12.07526 -11.75988 -11.61690 -11.39322 -11.26742 -11.21800 -10.98510 -10.87938 -10.31998 -10.15302 -9.96314 -9.80500 -8.95094 -8.68003 -8.29217 -8.16184 -7.62338 -7.52849 -6.30482 -4.38628 2.73619 3.07097 3.17528 3.22652 3.27142 3.86305 4.00097 4.18274 4.32091 4.51147 4.99725 5.14157 5.20215 5.34763 5.43165 5.52720 5.61402 5.70337 5.78664 5.79771 5.82843 5.91494 5.99429 6.07796 6.19872 6.23680 6.28741 6.51377 6.65156 6.72897 6.82259 6.90098 7.09628 7.12501 7.18982 7.45886 7.62147 7.66160 7.75476 7.96286 8.17090 8.47416 8.76631 9.24040 9.35807 10.72674 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005572 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.273664 B = 5023.746708 C = 6513.931690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.596 5.596 8 C 0.219 3.781 9 C -0.537 4.537 10 H 0.065 0.935 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.592 3.408 18 O -0.584 6.584 19 C -0.244 4.244 20 C -0.151 4.151 21 C -0.049 4.049 22 N -0.563 5.563 23 H 0.411 0.589 24 C 0.059 3.941 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.269 0.731 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 6.758 -1.723 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.325 5.325 8 C 0.099 3.901 9 C -0.576 4.576 10 H 0.083 0.917 11 C -0.141 4.141 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.383 3.617 18 O -0.467 6.467 19 C -0.253 4.253 20 C -0.176 4.176 21 C -0.176 4.176 22 N -0.158 5.158 23 H 0.246 0.754 24 C -0.075 4.075 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.502 6.797 -2.000 7.513 hybrid contribution 0.314 -0.721 1.222 1.453 sum -2.188 6.075 -0.779 6.504 Atomic orbital electron populations 1.22365 0.87754 1.02119 1.00091 1.61972 1.07409 1.13985 1.43811 1.22428 1.01566 0.88679 0.99954 1.22087 0.96134 0.97924 0.90785 1.21963 0.93535 1.01244 1.00061 1.21155 0.81489 0.99861 0.97507 1.47923 1.04895 1.24132 1.55596 1.19930 0.96268 0.81616 0.92287 1.21583 1.43056 0.98559 0.94390 0.91661 1.24999 0.95474 0.98140 0.95437 1.69933 1.44238 1.25497 1.12986 0.86578 0.79198 0.80875 0.81145 1.19876 1.21058 1.19978 1.17413 0.85178 0.81083 0.77978 1.90623 1.79416 1.34222 1.42457 1.20351 0.93065 0.95751 1.16175 1.21814 0.90942 0.98926 1.05938 1.21601 0.99287 0.86090 1.10617 1.41890 1.08834 1.11766 1.53275 0.75395 1.24849 0.81947 1.02850 0.97896 0.95934 0.91674 0.91388 0.90786 0.91818 0.95781 0.90672 0.94830 0.91878 0.90946 0.90696 0.91137 0.94369 0.93091 0.92167 0.84638 0.82550 0.74828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.85 16 2 N -0.55 -7.40 5.02 -251.27 -1.26 -8.66 16 3 C 0.02 0.27 9.32 60.06 0.56 0.83 16 4 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 5 C -0.13 -2.18 5.46 -26.73 -0.15 -2.32 16 6 C 0.12 2.37 5.41 -4.05 -0.02 2.35 16 7 N -0.60 -13.17 2.47 -176.39 -0.44 -13.60 16 8 C 0.22 5.11 4.69 -5.19 -0.02 5.08 16 9 C -0.54 -13.30 7.28 -34.44 -0.25 -13.55 16 10 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 11 C 0.06 1.55 4.95 -17.82 -0.09 1.46 16 12 N -0.89 -22.57 13.29 55.43 0.74 -21.83 16 13 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 C 0.59 13.92 7.62 -12.59 -0.10 13.83 16 18 O -0.58 -14.74 16.56 5.25 0.09 -14.65 16 19 C -0.24 -5.37 6.08 -103.35 -0.63 -5.99 16 20 C -0.15 -2.87 11.00 -37.50 -0.41 -3.29 16 21 C -0.05 -0.78 11.89 -16.83 -0.20 -0.98 16 22 N -0.56 -9.35 5.90 -12.85 -0.08 -9.43 16 23 H 0.41 5.41 8.96 -40.82 -0.37 5.05 16 24 C 0.06 1.23 9.37 -16.84 -0.16 1.07 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.07 1.00 6.47 -51.93 -0.34 0.67 16 29 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.06 1.14 6.55 -51.93 -0.34 0.80 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 36 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 37 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 38 H 0.05 1.22 4.73 -51.93 -0.25 0.98 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.24 5.31 3.02 -52.49 -0.16 5.15 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -29.27 342.11 -8.15 -37.42 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.43 Total: 10.92 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.91 Total: 0.16 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -1.04 Total: -53.53 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.27 -8.15 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068307583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.225 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds