Wall clock time and date at job start Tue Mar 31 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 110.99875 * 2 1 4 4 C 1.46895 * 111.00043 * 123.95726 * 2 1 3 5 5 C 1.52998 * 109.47478 * 170.00078 * 4 2 1 6 6 C 1.52997 * 109.47676 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47626 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00225 * 270.00270 * 7 6 5 9 9 C 1.50697 * 109.47043 * 264.63152 * 8 7 6 10 10 H 1.08006 * 120.00153 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00229 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99789 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46895 * 60.00504 * 13 11 9 15 15 H 1.48499 * 109.47055 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47248 * 300.00063 * 13 11 9 17 17 C 1.34777 * 120.00304 * 89.99690 * 7 6 5 18 18 O 1.21631 * 119.99700 * 3.75759 * 17 7 6 19 19 C 1.47267 * 120.00345 * 183.75411 * 17 7 6 20 20 C 1.46686 * 126.94224 * 164.65168 * 19 17 7 21 21 C 1.34483 * 106.33197 * 180.02562 * 20 19 17 22 22 N 1.36446 * 108.85872 * 359.97438 * 21 20 19 23 23 H 0.96997 * 124.85237 * 179.97438 * 22 21 20 24 24 C 1.34661 * 110.29708 * 0.26603 * 22 21 20 25 25 H 1.09001 * 109.47037 * 296.04526 * 1 2 3 26 26 H 1.08998 * 109.46996 * 56.04672 * 1 2 3 27 27 H 1.09000 * 109.47032 * 176.04374 * 1 2 3 28 28 H 1.09005 * 109.47072 * 183.95415 * 3 2 1 29 29 H 1.08999 * 109.47380 * 303.95363 * 3 2 1 30 30 H 1.08998 * 109.47192 * 63.95913 * 3 2 1 31 31 H 1.09000 * 109.47729 * 49.99937 * 4 2 1 32 32 H 1.09007 * 109.47141 * 289.99822 * 4 2 1 33 33 H 1.09005 * 109.47551 * 59.99653 * 5 4 2 34 34 H 1.09003 * 109.47110 * 300.00330 * 5 4 2 35 35 H 1.08997 * 109.46998 * 59.99972 * 6 5 4 36 36 H 1.09007 * 109.47176 * 299.99887 * 6 5 4 37 37 H 1.08999 * 109.46781 * 24.62682 * 8 7 6 38 38 H 1.09001 * 109.47720 * 144.62629 * 8 7 6 39 39 H 0.97001 * 120.00229 * 179.97438 * 12 11 9 40 40 H 1.08001 * 126.83409 * 0.02562 * 20 19 17 41 41 H 1.08002 * 125.57390 * 180.02562 * 21 20 19 42 42 H 1.07999 * 125.80549 * 179.69189 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0528 -1.7527 2.1554 7 7 5.4976 -1.9345 1.9950 8 6 6.0139 -3.1062 1.2830 9 6 6.3597 -4.1854 2.2763 10 1 6.2103 -4.0154 3.3324 11 6 6.8669 -5.3899 1.8370 12 7 7.0483 -5.5972 0.5510 13 14 7.2962 -6.7274 3.0683 14 1 6.0799 -7.1071 3.8308 15 1 7.8194 -7.9152 2.3467 16 1 8.3312 -6.2231 4.0062 17 6 6.3519 -1.0239 2.5023 18 8 5.9272 -0.0874 3.1519 19 6 7.7995 -1.1627 2.2702 20 6 8.8265 -0.1338 2.4661 21 6 9.9990 -0.7014 2.1319 22 7 9.7715 -1.9911 1.7491 23 1 10.4577 -2.6129 1.4605 24 6 8.4573 -2.2754 1.8232 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0709 29 1 1.5897 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.5090 -1.7407 1.1756 32 1 1.7975 -0.2248 2.0628 33 1 3.9910 0.0193 0.9323 34 1 3.7024 -1.4965 0.0450 35 1 3.5664 -2.7273 2.1938 36 1 3.8550 -1.2111 3.0805 37 1 5.2546 -3.4763 0.5940 38 1 6.9070 -2.8273 0.7238 39 1 7.4055 -6.4444 0.2419 40 1 8.6717 0.8781 2.8103 41 1 10.9633 -0.2159 2.1624 42 1 8.0005 -3.2218 1.5736 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068307583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:57 Heat of formation + Delta-G solvation = 9.002352 kcal Electronic energy + Delta-G solvation = -22229.774897 eV Core-core repulsion = 19017.528199 eV Total energy + Delta-G solvation = -3212.246698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95916 -40.14425 -38.58541 -36.88759 -34.91248 -33.19768 -31.54672 -30.10975 -29.10186 -28.49505 -27.11617 -25.06809 -24.17828 -22.39525 -21.74585 -21.33163 -20.19453 -18.79221 -18.33558 -17.30975 -17.02936 -16.52559 -16.23248 -16.16240 -15.68616 -15.43617 -14.94837 -14.84658 -14.65642 -14.37143 -14.08797 -13.74864 -13.42109 -13.27798 -13.15819 -12.90895 -12.89632 -12.71336 -12.61043 -12.41404 -12.35525 -12.09684 -11.78068 -11.71376 -11.50715 -10.80257 -10.58054 -9.69139 -9.35325 -9.32090 -9.07084 -8.21386 -6.35991 1.04644 1.42858 1.45882 1.52744 1.69030 2.30769 2.42631 2.66462 2.79155 3.06117 3.07309 3.89073 4.10672 4.18514 4.24434 4.39981 4.42853 4.45396 4.50848 4.62377 4.66758 4.71278 4.71976 4.79358 4.80259 4.93619 4.99178 5.01543 5.08500 5.18019 5.23865 5.30020 5.39705 5.67804 5.88092 6.01088 6.03219 6.06463 6.12486 6.18103 6.59361 6.85148 6.86900 7.31299 7.53938 8.81281 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.005572 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.273664 B = 5023.746708 C = 6513.931690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.067 3.933 5 C -0.113 4.113 6 C 0.121 3.879 7 N -0.598 5.598 8 C 0.234 3.766 9 C -0.543 4.543 10 H 0.048 0.952 11 C 0.034 3.966 12 N -0.908 5.908 13 Si 0.949 3.051 14 H -0.277 1.277 15 H -0.277 1.277 16 H -0.273 1.273 17 C 0.580 3.420 18 O -0.612 6.612 19 C -0.277 4.277 20 C -0.185 4.185 21 C -0.009 4.009 22 N -0.549 5.549 23 H 0.429 0.571 24 C 0.046 3.954 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.047 0.953 39 H 0.272 0.728 40 H 0.140 0.860 41 H 0.211 0.789 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 6.674 -1.854 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.002 4.002 7 N -0.326 5.326 8 C 0.114 3.886 9 C -0.582 4.582 10 H 0.066 0.934 11 C -0.168 4.168 12 N -0.546 5.546 13 Si 0.774 3.226 14 H -0.203 1.203 15 H -0.202 1.202 16 H -0.198 1.198 17 C 0.373 3.627 18 O -0.498 6.498 19 C -0.286 4.286 20 C -0.210 4.210 21 C -0.137 4.137 22 N -0.144 5.144 23 H 0.268 0.732 24 C -0.090 4.090 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.158 0.842 41 H 0.227 0.773 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.615 6.694 -2.151 7.214 hybrid contribution 0.077 -0.668 1.234 1.405 sum -1.539 6.026 -0.917 6.287 Atomic orbital electron populations 1.22433 0.85795 1.02951 1.01096 1.61956 1.09248 1.14359 1.43224 1.22425 1.00566 0.88564 1.00965 1.21960 0.94019 0.98815 0.91385 1.21756 0.95535 0.99595 0.98285 1.21299 0.80258 1.00425 0.98249 1.48001 1.06028 1.23583 1.55036 1.19681 0.95504 0.81640 0.91796 1.21527 1.43730 0.99372 0.93569 0.93381 1.25503 0.95068 0.99474 0.96720 1.69996 1.44470 1.26070 1.14109 0.85740 0.78694 0.78830 0.79291 1.20258 1.20196 1.19796 1.17837 0.86293 0.80841 0.77718 1.90579 1.80084 1.35248 1.43843 1.20556 0.92778 0.97585 1.17718 1.22025 0.91406 0.99178 1.08345 1.22287 1.00264 0.84887 1.06219 1.41878 1.07846 1.12605 1.52111 0.73201 1.24357 0.83761 1.01887 0.99018 0.95300 0.90155 0.90788 0.92574 0.89848 0.95538 0.89661 0.94672 0.93439 0.92071 0.90157 0.91778 0.95883 0.93529 0.91831 0.84183 0.77263 0.76747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.57 127.69 1.22 1.72 16 2 N -0.56 -14.77 5.02 -948.87 -4.76 -19.53 16 3 C 0.02 0.56 9.32 127.69 1.19 1.75 16 4 C 0.07 1.89 4.96 86.30 0.43 2.32 16 5 C -0.11 -3.93 5.46 30.59 0.17 -3.76 16 6 C 0.12 4.81 5.41 86.38 0.47 5.28 16 7 N -0.60 -27.48 2.47 -830.23 -2.05 -29.53 16 8 C 0.23 11.29 4.69 85.63 0.40 11.69 16 9 C -0.54 -27.40 7.28 25.60 0.19 -27.22 16 10 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 11 C 0.03 1.69 4.95 84.65 0.42 2.11 16 12 N -0.91 -46.02 13.29 21.45 0.28 -45.73 16 13 Si 0.95 39.68 29.54 68.60 2.03 41.71 16 14 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 C 0.58 28.29 7.62 86.62 0.66 28.95 16 18 O -0.61 -32.03 16.56 -4.13 -0.07 -32.10 16 19 C -0.28 -12.32 6.08 -19.04 -0.12 -12.43 16 20 C -0.19 -6.86 11.00 23.62 0.26 -6.60 16 21 C -0.01 -0.26 11.89 83.12 0.99 0.73 16 22 N -0.55 -16.98 5.90 -194.56 -1.15 -18.13 16 23 H 0.43 10.06 8.96 -92.71 -0.83 9.23 16 24 C 0.05 1.90 9.37 83.92 0.79 2.69 16 25 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 28 H 0.06 1.55 6.47 -2.38 -0.02 1.54 16 29 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 2.24 8.06 -2.39 -0.02 2.22 16 32 H 0.04 0.99 8.12 -2.38 -0.02 0.97 16 33 H 0.05 1.80 6.55 -2.38 -0.02 1.78 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 3.05 8.07 -2.39 -0.02 3.03 16 36 H 0.06 2.61 7.37 -2.38 -0.02 2.59 16 37 H 0.02 1.16 8.03 -2.39 -0.02 1.14 16 38 H 0.05 2.31 4.73 -2.39 -0.01 2.30 16 39 H 0.27 13.08 8.31 -92.71 -0.77 12.30 16 40 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.21 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.22 9.88 3.02 -2.91 -0.01 9.87 16 Total: -1.00 -63.87 342.11 1.53 -62.34 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.19 Total: 33.75 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.06 Total: 7.22 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -7.68 Total: -112.92 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.07 Total: -32.10 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -63.87 1.53 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068307583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.340 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds