Wall clock time and date at job start Tue Mar 31 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.50703 * 109.47033 * 180.02562 * 5 4 2 7 7 C 1.38220 * 120.01299 * 99.99736 * 6 5 4 8 8 C 1.38215 * 120.02617 * 179.97438 * 7 6 5 9 9 C 1.38267 * 120.05080 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02611 * 359.97438 * 9 8 7 11 11 C 1.38437 * 120.01257 * 279.72239 * 6 5 4 12 12 F 1.35102 * 120.02246 * 0.02562 * 11 6 5 13 13 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 14 14 C 1.46903 * 110.99807 * 84.99961 * 13 2 1 15 15 C 1.53001 * 109.46980 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47040 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46908 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00205 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00096 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47297 * 89.99325 * 21 19 17 23 23 H 1.48497 * 109.47298 * 209.99787 * 21 19 17 24 24 H 1.48505 * 109.46687 * 329.99680 * 21 19 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 31 31 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 32 32 H 1.08002 * 119.98479 * 359.95907 * 7 6 5 33 33 H 1.08001 * 119.97561 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.98759 * 179.97438 * 9 8 7 35 35 H 1.08005 * 120.01356 * 179.97438 * 10 9 8 36 36 H 1.00902 * 111.00121 * 321.04559 * 13 2 1 37 37 H 1.09000 * 109.47514 * 299.99609 * 14 13 2 38 38 H 1.08999 * 109.47620 * 60.00050 * 14 13 2 39 39 H 1.08998 * 109.47159 * 299.99923 * 15 14 13 40 40 H 1.09001 * 109.47307 * 59.99948 * 15 14 13 41 41 H 1.08994 * 109.46759 * 299.99511 * 16 15 14 42 42 H 1.08994 * 109.46958 * 60.00098 * 16 15 14 43 43 H 0.97001 * 120.00671 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0673 -1.3242 2.5438 7 6 4.5898 -2.5997 2.4402 8 6 5.0511 -3.2518 3.5682 9 6 4.9901 -2.6295 4.8014 10 6 4.4681 -1.3545 4.9074 11 6 4.0109 -0.6980 3.7771 12 9 3.5049 0.5506 3.8787 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2228 -2.3469 15 6 2.5963 -0.5326 -3.5742 16 6 2.6623 0.4207 -4.7691 17 6 3.1690 -0.3232 -5.9778 18 1 3.4185 -1.3712 -5.9015 19 6 3.3129 0.3339 -7.1814 20 7 3.7555 -0.3151 -8.2360 21 14 2.8806 2.1464 -7.3135 22 1 4.0808 2.9653 -7.0063 23 1 2.4170 2.4455 -8.6922 24 1 1.8004 2.4693 -6.3470 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3574 32 1 4.6374 -3.0869 1.4776 33 1 5.4589 -4.2485 3.4864 34 1 5.3505 -3.1402 5.6822 35 1 4.4201 -0.8687 5.8708 36 1 1.4496 -1.4979 -1.4101 37 1 1.0871 0.6165 -2.5525 38 1 2.7589 1.0464 -2.1182 39 1 3.5918 -0.9259 -3.3683 40 1 1.9203 -1.3565 -3.8031 41 1 1.6670 0.8144 -4.9751 42 1 3.3385 1.2442 -4.5399 43 1 3.8572 0.1472 -9.0827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178645021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:51 Heat of formation + Delta-G solvation = -52.726006 kcal Electronic energy + Delta-G solvation = -20843.704485 eV Core-core repulsion = 17608.861083 eV Total energy + Delta-G solvation = -3234.843402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.04526 -39.35537 -37.69674 -34.70950 -33.32372 -31.97741 -30.77935 -29.93145 -28.51503 -26.16656 -24.34235 -22.96920 -22.20667 -21.31925 -20.82352 -19.81483 -17.74185 -16.73951 -16.62858 -16.01699 -15.78744 -15.40102 -15.15819 -14.54264 -14.35298 -14.14831 -13.79541 -13.56248 -13.19486 -13.15251 -12.84018 -12.69637 -12.52597 -12.16540 -12.00409 -11.80417 -11.55982 -11.46340 -11.12051 -10.94537 -10.79313 -10.75830 -10.70800 -9.92948 -9.70382 -9.52866 -9.18073 -9.14540 -8.83713 -8.51404 -8.16455 -6.01799 -3.99385 0.93295 0.98013 3.32303 3.35704 3.39396 3.43175 4.06895 4.35570 4.43731 4.47364 4.52722 4.69028 4.88311 4.99785 5.07663 5.10723 5.25682 5.32222 5.34289 5.49843 5.58730 5.61764 5.73595 5.75449 5.79759 5.82035 5.90528 5.92878 6.02992 6.09790 6.15393 6.22000 6.25715 6.34960 6.59299 6.62427 6.68849 6.95000 7.26826 7.37980 7.47340 7.62606 7.83131 8.57591 9.03837 9.61026 11.11818 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.002802 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.049309 B = 9989.195376 C =10463.179053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.081 3.919 3 H 0.076 0.924 4 C -0.097 4.097 5 C -0.076 4.076 6 C -0.107 4.107 7 C -0.088 4.088 8 C -0.129 4.129 9 C -0.102 4.102 10 C -0.156 4.156 11 C 0.094 3.906 12 F -0.139 7.139 13 N -0.683 5.683 14 C 0.057 3.943 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.339 0.661 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.012 0.988 42 H 0.011 0.989 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -2.930 27.548 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.113 4.113 6 C -0.108 4.108 7 C -0.106 4.106 8 C -0.147 4.147 9 C -0.120 4.120 10 C -0.175 4.175 11 C 0.075 3.925 12 F -0.118 7.118 13 N -0.314 5.314 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.929 -2.767 27.520 27.675 hybrid contribution -1.228 1.287 -0.357 1.815 sum -2.157 -1.479 27.163 27.289 Atomic orbital electron populations 1.22494 0.97502 1.02025 1.02070 1.21583 0.92271 0.98174 0.90934 0.90590 1.21509 0.94408 1.00902 0.96653 1.20526 0.96064 1.00171 0.94556 1.20188 1.00518 0.95754 0.94361 1.21087 0.96750 0.93352 0.99411 1.21241 1.00497 1.00465 0.92540 1.20978 0.98802 0.94166 0.98072 1.21131 1.02158 0.96406 0.97787 1.17632 0.99718 0.80778 0.94343 1.91485 1.84904 1.38489 1.96877 1.60644 1.56809 1.09961 1.03962 1.22167 0.98947 0.95545 0.90553 1.21435 1.00766 0.98554 0.92934 1.19542 0.96301 0.95355 0.93904 1.21160 1.43374 0.98329 0.92751 0.91039 1.25045 0.94701 0.98109 0.95766 1.69916 1.46933 1.36625 1.00970 0.86767 0.79304 0.85956 0.77171 1.20299 1.21455 1.19102 0.92497 0.92393 0.92509 0.92207 0.91792 0.88653 0.91193 0.84695 0.85425 0.85330 0.85078 0.84355 0.95840 0.91623 0.92018 0.93108 0.96923 0.97097 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 2 C 0.08 0.92 2.59 -67.71 -0.18 0.74 16 3 H 0.08 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.10 -1.01 4.87 -26.73 -0.13 -1.14 16 5 C -0.08 -0.83 4.96 -27.88 -0.14 -0.97 16 6 C -0.11 -1.13 5.14 -104.55 -0.54 -1.66 16 7 C -0.09 -0.81 9.67 -39.60 -0.38 -1.19 16 8 C -0.13 -1.01 10.04 -39.58 -0.40 -1.41 16 9 C -0.10 -0.77 10.04 -39.59 -0.40 -1.17 16 10 C -0.16 -1.37 10.03 -39.52 -0.40 -1.76 16 11 C 0.09 1.01 7.24 -39.42 -0.29 0.72 16 12 F -0.14 -1.62 16.66 2.25 0.04 -1.59 16 13 N -0.68 -9.05 5.70 -106.72 -0.61 -9.66 16 14 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 15 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 16 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 17 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 21 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.12 7.61 -51.93 -0.40 0.73 16 31 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 32 H 0.14 1.11 8.04 -52.49 -0.42 0.69 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.34 4.29 8.47 -39.29 -0.33 3.95 16 37 H 0.02 0.37 7.44 -51.93 -0.39 -0.01 16 38 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 42 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -30.96 355.25 -9.64 -40.59 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.32 Total: 0.01 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.21 Total: -24.56 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.16 Total: -37.18 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.96 -9.64 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.132 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds