Wall clock time and date at job start Tue Mar 31 2020 01:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46908 * 110.99948 * 2 1 4 4 C 1.46903 * 110.99812 * 123.95216 * 2 1 3 5 5 C 1.52988 * 109.47306 * 75.76191 * 4 2 1 6 6 O 1.42904 * 109.47429 * 65.08205 * 5 4 2 7 7 C 1.35673 * 116.99920 * 179.97438 * 6 5 4 8 8 C 1.38922 * 119.67982 * 180.02562 * 7 6 5 9 9 C 1.38383 * 119.10948 * 180.25843 * 8 7 6 10 10 C 1.50696 * 120.75733 * 179.72368 * 9 8 7 11 11 N 1.46904 * 109.47286 * 89.99719 * 10 9 8 12 12 C 1.46902 * 111.00241 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47225 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99645 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99973 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99936 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 119.99932 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47469 * 90.00055 * 17 15 13 19 19 H 1.48504 * 109.47282 * 210.00247 * 17 15 13 20 20 H 1.48501 * 109.47444 * 329.99779 * 17 15 13 21 21 C 1.38833 * 118.48447 * 359.50596 * 9 8 7 22 22 C 1.38041 * 119.28735 * 0.51387 * 21 9 8 23 23 N 1.31964 * 120.83658 * 359.72959 * 22 21 9 24 24 H 1.08997 * 109.47273 * 296.04872 * 1 2 3 25 25 H 1.08998 * 109.47199 * 56.04622 * 1 2 3 26 26 H 1.08998 * 109.47108 * 176.04841 * 1 2 3 27 27 H 1.08996 * 109.46730 * 188.85124 * 3 2 1 28 28 H 1.08998 * 109.46842 * 308.84735 * 3 2 1 29 29 H 1.08994 * 109.46832 * 68.84964 * 3 2 1 30 30 H 1.08999 * 109.47047 * 315.75733 * 4 2 1 31 31 H 1.09010 * 109.46747 * 195.76272 * 4 2 1 32 32 H 1.09004 * 109.47099 * 305.08631 * 5 4 2 33 33 H 1.09000 * 109.47326 * 185.08414 * 5 4 2 34 34 H 1.07998 * 120.44539 * 359.97438 * 8 7 6 35 35 H 1.08994 * 109.47221 * 209.99626 * 10 9 8 36 36 H 1.09001 * 109.47092 * 329.99665 * 10 9 8 37 37 H 1.00897 * 110.99749 * 56.04312 * 11 10 9 38 38 H 1.09000 * 109.46937 * 299.99757 * 12 11 10 39 39 H 1.08997 * 109.46704 * 59.99772 * 12 11 10 40 40 H 0.97000 * 120.00331 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.35081 * 180.26484 * 21 9 8 42 42 H 1.08006 * 119.58488 * 179.74769 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8469 -2.2626 0.8572 6 8 2.6712 -2.6233 -0.2530 7 6 2.6559 -3.9253 -0.6341 8 6 3.4368 -4.3374 -1.7067 9 6 3.4080 -5.6671 -2.0887 10 6 4.2354 -6.1532 -3.2507 11 7 5.5549 -6.5812 -2.7672 12 6 6.3912 -7.0619 -3.8751 13 6 7.7339 -7.4906 -3.3418 14 1 7.9447 -7.4140 -2.2853 15 6 8.6927 -7.9816 -4.2024 16 7 9.8642 -8.3561 -3.7369 17 14 8.3277 -8.1146 -6.0295 18 1 8.7221 -6.8531 -6.7063 19 1 9.0957 -9.2470 -6.6066 20 1 6.8749 -8.3497 -6.2282 21 6 2.6031 -6.5441 -1.3743 22 6 1.8530 -6.0650 -0.3191 23 7 1.8974 -4.7900 0.0185 24 1 -0.3634 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0736 1.3468 -0.1581 28 1 1.5238 1.9417 -0.8004 29 1 1.7794 1.8435 0.9584 30 1 1.4382 -0.5080 2.0383 31 1 3.0490 -0.5258 1.2809 32 1 0.8059 -2.4872 0.6249 33 1 2.1534 -2.8292 1.7365 34 1 4.0544 -3.6285 -2.2381 35 1 3.7329 -6.9945 -3.7278 36 1 4.3574 -5.3458 -3.9728 37 1 5.4662 -7.2844 -2.0491 38 1 5.9038 -7.9094 -4.3570 39 1 6.5280 -6.2605 -4.6012 40 1 10.5387 -8.7019 -4.3422 41 1 2.5611 -7.5890 -1.6437 42 1 1.2220 -6.7422 0.2374 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583258786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:36 Heat of formation + Delta-G solvation = 7.840894 kcal Electronic energy + Delta-G solvation = -20847.020567 eV Core-core repulsion = 17634.723505 eV Total energy + Delta-G solvation = -3212.297062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51006 -38.51470 -37.13356 -35.70403 -33.00390 -31.75269 -31.17395 -29.47588 -27.91146 -27.89875 -25.13658 -24.22882 -23.25874 -21.91727 -21.15290 -20.82590 -17.97788 -16.86423 -16.69785 -16.57145 -15.86782 -15.42965 -15.14755 -15.06302 -15.02869 -14.30116 -14.08376 -13.73812 -13.49545 -13.15290 -12.95473 -12.73811 -12.69966 -12.42201 -12.05145 -12.00907 -11.96274 -11.58799 -11.39846 -11.28375 -10.90320 -10.68190 -10.62044 -9.94751 -9.54120 -9.44677 -9.30591 -8.66103 -8.60618 -8.35077 -7.55719 -6.07195 -4.05764 1.32009 1.40326 3.06163 3.28233 3.35365 3.36841 3.60703 3.90434 4.38373 4.40491 4.66081 4.75370 4.83408 4.90983 5.01468 5.06121 5.17875 5.24311 5.24639 5.26118 5.31977 5.32644 5.38096 5.40138 5.52558 5.60381 5.64908 5.70868 5.96898 5.98088 6.05599 6.48672 6.59655 6.66727 6.70569 6.73126 6.96510 7.39772 7.54701 7.81444 7.95765 8.24089 8.61302 9.00805 9.53938 11.06039 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.002881 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.936494 B = 9715.272754 C =10271.976908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.052 3.948 5 C 0.080 3.920 6 O -0.290 6.290 7 C 0.319 3.681 8 C -0.167 4.167 9 C 0.007 3.993 10 C 0.090 3.910 11 N -0.673 5.673 12 C 0.164 3.836 13 C -0.517 4.517 14 H 0.079 0.921 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.207 4.207 22 C 0.133 3.867 23 N -0.550 5.550 24 H 0.024 0.976 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.338 0.662 38 H -0.014 1.014 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.133 0.867 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.027 13.627 8.216 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.123 4.123 4 C -0.076 4.076 5 C 0.004 3.996 6 O -0.197 6.197 7 C 0.140 3.860 8 C -0.188 4.188 9 C -0.001 4.001 10 C -0.039 4.039 11 N -0.304 5.304 12 C 0.037 3.963 13 C -0.555 4.555 14 H 0.097 0.903 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.706 3.294 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.228 4.228 22 C -0.022 4.022 23 N -0.275 5.275 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.004 0.996 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.151 0.849 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.763 14.505 8.292 26.650 hybrid contribution -0.388 -0.969 -0.931 1.398 sum -21.151 13.536 7.361 26.168 Atomic orbital electron populations 1.22465 0.87409 1.02407 1.00403 1.61915 1.07821 1.13928 1.42931 1.22399 1.01314 0.88452 1.00106 1.22270 1.01585 0.92171 0.91615 1.22553 0.94843 0.94093 0.88147 1.86323 1.63681 1.20635 1.49050 1.19819 0.91186 0.84267 0.90696 1.20944 1.02464 0.96859 0.98580 1.20183 0.92719 0.92142 0.95070 1.20957 0.90158 0.99734 0.93079 1.60535 1.09703 1.45751 1.14387 1.20040 0.93157 0.93345 0.89798 1.21034 0.95867 1.41680 0.96967 0.90253 1.24904 0.94865 0.94886 0.98667 1.69896 1.05059 1.43497 1.35358 0.86813 0.78714 0.78046 0.85877 1.20078 1.21193 1.19239 1.21892 1.00877 1.01067 0.99010 1.22241 0.95861 0.90236 0.93861 1.67272 1.23672 1.04690 1.31849 0.95711 0.91254 0.91292 0.90993 0.91342 0.95779 0.92435 0.89613 0.91789 0.91393 0.84061 0.94542 0.90185 0.84451 0.99616 0.95766 0.92594 0.84885 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.39 60.06 0.56 0.73 16 2 N -0.54 -5.16 4.90 -251.27 -1.23 -6.39 16 3 C 0.03 0.19 9.52 60.07 0.57 0.77 16 4 C 0.05 0.46 5.38 -3.83 -0.02 0.44 16 5 C 0.08 0.87 5.50 37.15 0.20 1.07 16 6 O -0.29 -4.12 10.06 -18.72 -0.19 -4.30 16 7 C 0.32 4.79 7.49 -17.12 -0.13 4.67 16 8 C -0.17 -2.58 9.75 -39.27 -0.38 -2.96 16 9 C 0.01 0.10 5.43 -104.35 -0.57 -0.46 16 10 C 0.09 1.49 5.86 -4.98 -0.03 1.46 16 11 N -0.67 -13.88 6.48 -116.34 -0.75 -14.64 16 12 C 0.16 3.95 4.51 -4.97 -0.02 3.93 16 13 C -0.52 -14.82 9.87 -34.44 -0.34 -15.16 16 14 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 17 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.21 -2.73 9.81 -39.43 -0.39 -3.11 16 22 C 0.13 1.65 11.17 -17.57 -0.20 1.46 16 23 N -0.55 -7.77 9.22 -13.33 -0.12 -7.89 16 24 H 0.02 0.16 8.09 -51.93 -0.42 -0.26 16 25 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 26 H 0.07 0.56 6.80 -51.93 -0.35 0.21 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 29 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 30 H 0.06 0.41 7.96 -51.93 -0.41 -0.01 16 31 H 0.09 0.76 7.94 -51.92 -0.41 0.35 16 32 H 0.06 0.70 6.74 -51.93 -0.35 0.34 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.04 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 37 H 0.34 6.80 8.72 -39.29 -0.34 6.46 16 38 H -0.01 -0.33 7.20 -51.93 -0.37 -0.70 16 39 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -32.37 350.22 -8.60 -40.97 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.86 Total: 2.37 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.83 Total: -5.28 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -1.33 Total: -55.84 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.19 Total: -4.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.37 -8.60 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583258786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.814 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds