Wall clock time and date at job start Tue Mar 31 2020 01:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47224 * 2 1 4 4 C 1.53001 * 109.47222 * 119.99934 * 2 1 3 5 5 N 1.46902 * 109.46987 * 65.91729 * 4 2 1 6 6 C 1.46906 * 110.99801 * 211.90747 * 5 4 2 7 7 C 1.50696 * 109.46978 * 71.87923 * 6 5 4 8 8 H 1.07998 * 120.00201 * 5.03886 * 7 6 5 9 9 C 1.37880 * 119.99831 * 185.04155 * 7 6 5 10 10 N 1.31517 * 119.99883 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00037 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47410 * 59.99765 * 11 9 7 13 13 H 1.48503 * 109.47177 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46719 * 299.99749 * 11 9 7 15 15 C 1.46897 * 110.99896 * 87.95725 * 5 4 2 16 16 C 1.50702 * 109.46787 * 293.14200 * 15 5 4 17 17 C 1.38238 * 119.99899 * 97.66718 * 16 15 5 18 18 C 1.38232 * 119.99540 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00587 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00254 * 179.97438 * 19 18 17 21 21 F 1.39894 * 109.47558 * 90.00065 * 20 19 18 22 22 C 1.38238 * 119.99814 * 0.25421 * 19 18 17 23 23 C 1.38238 * 119.99792 * 277.68249 * 16 15 5 24 24 H 1.09000 * 109.47366 * 64.84704 * 1 2 3 25 25 H 1.09000 * 109.47360 * 184.84421 * 1 2 3 26 26 H 1.09001 * 109.47106 * 304.84768 * 1 2 3 27 27 H 1.09001 * 109.47207 * 239.99316 * 2 1 3 28 28 H 1.09001 * 109.47227 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46784 * 299.99594 * 3 2 1 30 30 H 1.08994 * 109.47715 * 60.00204 * 3 2 1 31 31 H 1.08999 * 109.47141 * 305.91976 * 4 2 1 32 32 H 1.08992 * 109.47434 * 185.91628 * 4 2 1 33 33 H 1.09005 * 109.47100 * 191.87691 * 6 5 4 34 34 H 1.09003 * 109.47195 * 311.87814 * 6 5 4 35 35 H 0.97003 * 119.99524 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47224 * 173.14131 * 15 5 4 37 37 H 1.09001 * 109.47518 * 53.14205 * 15 5 4 38 38 H 1.07993 * 120.00121 * 359.97438 * 17 16 15 39 39 H 1.08003 * 119.99351 * 179.97438 * 18 17 16 40 40 H 1.09003 * 109.46871 * 329.99257 * 20 19 18 41 41 H 1.09005 * 109.47235 * 210.00235 * 20 19 18 42 42 H 1.07994 * 120.00062 * 179.72509 * 22 19 18 43 43 H 1.07999 * 120.00173 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6704 -2.1413 1.1800 6 6 1.4292 -2.6885 2.5218 7 6 0.1355 -2.1377 3.0638 8 1 -0.4894 -1.5149 2.4409 9 6 -0.2504 -2.4287 4.3552 10 7 0.5104 -3.1874 5.1136 11 14 -1.8544 -1.7464 5.0269 12 1 -2.9854 -2.2324 4.1964 13 1 -2.0375 -2.2016 6.4285 14 1 -1.8150 -0.2624 4.9900 15 6 2.6960 -2.9182 0.4712 16 6 2.7289 -2.5030 -0.9772 17 6 3.6680 -1.5867 -1.4123 18 6 3.6985 -1.2063 -2.7409 19 6 2.7896 -1.7418 -3.6343 20 6 2.8226 -1.3266 -5.0826 21 9 3.6709 -2.1819 -5.7938 22 6 1.8468 -2.6538 -3.1980 23 6 1.8198 -3.0384 -1.8704 24 1 -0.3634 0.4368 -0.9302 25 1 -0.3634 -1.0240 0.0868 26 1 -0.3633 0.5872 0.8434 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.5927 -0.2723 2.1361 32 1 3.1247 -0.6304 1.3038 33 1 1.3659 -3.7753 2.4650 34 1 2.2493 -2.4063 3.1821 35 1 0.2390 -3.3918 6.0222 36 1 2.4593 -3.9800 0.5395 37 1 3.6699 -2.7332 0.9244 38 1 4.3777 -1.1680 -0.7143 39 1 4.4319 -0.4900 -3.0807 40 1 3.1907 -0.3035 -5.1589 41 1 1.8170 -1.3829 -5.4997 42 1 1.1340 -3.0688 -3.8950 43 1 1.0857 -3.7538 -1.5303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777588937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:55 Heat of formation + Delta-G solvation = -37.630950 kcal Electronic energy + Delta-G solvation = -22344.945835 eV Core-core repulsion = 19110.757004 eV Total energy + Delta-G solvation = -3234.188831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.71652 -39.62115 -37.11476 -34.07475 -32.99761 -31.82753 -30.83414 -28.11992 -26.65638 -26.57424 -25.17328 -23.28426 -22.60530 -21.03120 -20.30091 -19.36734 -16.66672 -16.30934 -16.20012 -15.96442 -15.29642 -15.09830 -14.69179 -14.36750 -14.13633 -13.97369 -13.46722 -13.33364 -13.28200 -12.54234 -12.41230 -12.26971 -11.91481 -11.71342 -11.58204 -11.34027 -11.24466 -10.99876 -10.93303 -10.82816 -10.66541 -10.57431 -10.30257 -10.10986 -9.85684 -9.75154 -9.26777 -8.74758 -8.44601 -8.37128 -7.25836 -6.02339 -4.03341 1.36385 1.54796 3.33078 3.37314 3.40221 3.82353 4.42933 4.48280 4.62433 4.78035 4.94667 5.09277 5.12143 5.20141 5.32864 5.48007 5.52493 5.54304 5.59713 5.66149 5.81420 5.88967 5.97177 6.02623 6.13980 6.20548 6.23399 6.30565 6.37175 6.49480 6.53370 6.56829 6.58974 6.68013 6.87148 7.00299 7.08324 7.10517 7.26403 7.34959 7.84273 8.09694 8.19394 8.53977 9.05812 9.60991 11.08109 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.004267 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.375181 B = 6560.937378 C = 6848.603128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.068 3.932 5 N -0.526 5.526 6 C 0.193 3.807 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.085 3.915 16 C -0.042 4.042 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.150 4.150 20 C 0.109 3.891 21 F -0.216 7.216 22 C -0.099 4.099 23 C -0.100 4.100 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.019 0.981 33 H 0.025 0.975 34 H -0.005 1.005 35 H 0.261 0.739 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 4.972 -16.281 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.068 3.932 7 C -0.541 4.541 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.043 4.043 16 C -0.043 4.043 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.054 3.946 21 F -0.197 7.197 22 C -0.117 4.117 23 C -0.119 4.119 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.137 0.863 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.614 4.821 -16.344 17.653 hybrid contribution -0.071 0.402 1.028 1.106 sum 4.543 5.222 -15.316 16.807 Atomic orbital electron populations 1.21662 0.95181 1.02939 0.99154 1.21399 0.96569 0.94434 0.99591 1.21804 1.00066 0.97300 1.00973 1.22073 0.96252 0.89506 0.98203 1.62088 1.39882 1.01246 1.21735 1.19775 0.96313 0.95175 0.81929 1.21146 1.05087 1.30803 0.97085 0.91593 1.24981 0.97228 0.95450 0.96935 1.69952 1.37781 1.37635 1.08646 0.86602 0.83956 0.79309 0.77795 1.20186 1.21451 1.20312 1.21159 0.94630 0.98930 0.89557 1.20039 0.93759 0.94490 0.96011 1.21010 0.99114 0.97745 0.95402 1.20881 0.98105 0.99722 0.93241 1.20055 0.98883 1.00906 0.95203 1.20760 0.93698 0.92394 0.87701 1.92793 1.73682 1.73503 1.79705 1.20977 0.97895 0.96752 0.96081 1.21038 0.98275 1.00191 0.92368 0.94983 0.90921 0.93632 0.90254 0.93631 0.93506 0.93067 0.90294 0.96313 0.95662 0.98730 0.92939 0.90352 0.95000 0.86270 0.86398 0.90269 0.90188 0.86254 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.14 37.16 0.34 -1.91 16 2 C -0.10 -1.63 2.62 -90.63 -0.24 -1.87 16 3 C -0.14 -1.99 9.19 37.15 0.34 -1.65 16 4 C 0.07 1.28 3.93 -3.82 -0.02 1.27 16 5 N -0.53 -10.65 3.79 -237.51 -0.90 -11.55 16 6 C 0.19 4.82 4.67 -4.97 -0.02 4.80 16 7 C -0.50 -13.64 8.32 -34.44 -0.29 -13.92 16 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 11 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.09 1.47 5.02 -4.98 -0.02 1.45 16 16 C -0.04 -0.63 3.46 -104.62 -0.36 -0.99 16 17 C -0.11 -1.53 7.31 -39.58 -0.29 -1.82 16 18 C -0.10 -1.22 9.61 -39.58 -0.38 -1.60 16 19 C -0.15 -1.77 5.60 -104.62 -0.59 -2.35 16 20 C 0.11 1.03 7.68 36.00 0.28 1.31 16 21 F -0.22 -2.58 17.34 2.25 0.04 -2.54 16 22 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 23 C -0.10 -1.42 9.68 -39.58 -0.38 -1.80 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.25 3.85 -51.93 -0.20 1.05 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.70 7.04 -51.93 -0.37 1.33 16 32 H 0.02 0.34 7.64 -51.93 -0.40 -0.06 16 33 H 0.03 0.67 7.80 -51.93 -0.41 0.27 16 34 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 37 H 0.03 0.54 7.76 -51.93 -0.40 0.14 16 38 H 0.12 1.52 8.05 -52.49 -0.42 1.09 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -29.02 349.52 -9.17 -38.19 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.18 Total: -0.89 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.11 Total: -19.27 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.16 Total: -37.17 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.02 -9.17 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777588937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.559 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds