Wall clock time and date at job start Tue Mar 31 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46965 * 2 1 4 4 C 1.46496 * 120.00128 * 263.41319 * 3 2 1 5 5 C 1.50698 * 109.46853 * 269.99896 * 4 3 2 6 6 H 1.07998 * 120.00789 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00092 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99596 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00310 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47049 * 90.00033 * 9 7 5 11 11 H 1.48503 * 109.46919 * 210.00082 * 9 7 5 12 12 H 1.48499 * 109.47234 * 329.99962 * 9 7 5 13 13 C 1.34784 * 119.99788 * 83.41431 * 3 2 1 14 14 O 1.21575 * 119.99642 * 184.03905 * 13 3 2 15 15 C 1.47706 * 120.00318 * 4.03194 * 13 3 2 16 16 C 1.41502 * 126.51944 * 173.63338 * 15 13 3 17 17 C 1.35362 * 105.50096 * 179.97438 * 16 15 13 18 18 N 1.35030 * 107.23334 * 359.97438 * 17 16 15 19 19 C 1.46500 * 124.88589 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46900 * 125.02718 * 19 18 17 21 21 C 1.52997 * 109.47155 * 174.99930 * 20 19 18 22 22 C 1.52997 * 109.47036 * 295.00161 * 20 19 18 23 23 N 1.28466 * 110.23095 * 0.02562 * 18 17 16 24 24 H 1.09002 * 109.46814 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47710 * 299.99744 * 1 2 3 26 26 H 1.08998 * 109.46581 * 60.00364 * 1 2 3 27 27 H 1.08999 * 109.47492 * 239.99766 * 2 1 3 28 28 H 1.09001 * 109.47038 * 119.99848 * 2 1 3 29 29 H 1.08998 * 109.46974 * 29.99851 * 4 3 2 30 30 H 1.08997 * 109.47388 * 150.00052 * 4 3 2 31 31 H 0.97003 * 119.99647 * 179.97438 * 8 7 5 32 32 H 1.07998 * 127.24598 * 0.02562 * 16 15 13 33 33 H 1.08003 * 126.38124 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47161 * 245.02835 * 19 18 17 35 35 H 1.08997 * 109.47472 * 5.03254 * 19 18 17 36 36 H 1.09004 * 109.47193 * 55.00229 * 20 19 18 37 37 H 1.09005 * 109.47344 * 60.00074 * 21 20 19 38 38 H 1.09001 * 109.47390 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47283 * 300.00080 * 21 20 19 40 40 H 1.09001 * 109.46769 * 180.02562 * 22 20 19 41 41 H 1.08996 * 109.46997 * 299.99452 * 22 20 19 42 42 H 1.08994 * 109.47260 * 60.00230 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3997 2.0234 -1.2603 5 6 3.8611 1.7731 -1.5294 6 1 4.4473 1.1934 -0.8317 7 6 4.4500 2.2834 -2.6670 8 7 3.7362 2.9889 -3.5169 9 14 6.2613 1.9726 -3.0009 10 1 6.4124 0.7202 -3.7845 11 1 6.8248 3.1099 -3.7719 12 1 6.9868 1.8406 -1.7120 13 6 2.1167 2.0612 1.1596 14 8 2.4516 3.2299 1.1523 15 6 1.8175 1.3866 2.4391 16 6 1.9953 1.9238 3.7360 17 6 1.5901 0.9533 4.5883 18 7 1.1947 -0.0978 3.8386 19 6 0.6824 -1.3622 4.3726 20 6 -0.6883 -1.6566 3.7596 21 6 -1.1676 -3.0346 4.2202 22 6 -1.6887 -0.5911 4.2120 23 7 1.3333 0.1699 2.5898 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8042 1.6090 -2.0739 30 1 2.2218 3.0964 -1.1898 31 1 4.1505 3.3483 -4.3170 32 1 2.3736 2.9024 3.9919 33 1 1.5836 1.0097 5.6668 34 1 1.3726 -2.1682 4.1233 35 1 0.5873 -1.2873 5.4558 36 1 -0.6105 -1.6437 2.6725 37 1 -1.2454 -3.0476 5.3074 38 1 -2.1438 -3.2446 3.7832 39 1 -0.4548 -3.7937 3.8979 40 1 -2.6652 -0.8011 3.7757 41 1 -1.7666 -0.6041 5.2991 42 1 -1.3473 0.3906 3.8839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896861425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:24 Heat of formation + Delta-G solvation = 41.795608 kcal Electronic energy + Delta-G solvation = -22479.171788 eV Core-core repulsion = 19268.347112 eV Total energy + Delta-G solvation = -3210.824675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45626 -38.58519 -36.67363 -35.12795 -32.79721 -31.96135 -30.52951 -29.85206 -27.62420 -27.49103 -26.32936 -23.59027 -22.78395 -21.58062 -21.21949 -20.16870 -18.58925 -17.09933 -16.39908 -16.18986 -15.99151 -15.19466 -15.13772 -14.30369 -14.19196 -13.73188 -13.55413 -13.48389 -13.17631 -12.97794 -12.73719 -12.59065 -12.26722 -12.17684 -11.79482 -11.54590 -11.43333 -11.33678 -11.12692 -11.08739 -10.86457 -10.77389 -10.49298 -10.16037 -9.87202 -9.54418 -9.03977 -8.90767 -8.76356 -8.35564 -7.49794 -5.96241 -4.00571 2.00452 2.47638 2.57553 3.35764 3.41868 3.47245 4.04232 4.19574 4.22530 4.44491 4.52383 4.64980 4.76738 4.91773 5.01108 5.15286 5.25491 5.29747 5.37299 5.47470 5.50822 5.57857 5.73250 5.75204 5.90288 5.94448 5.95781 5.98913 6.03148 6.09211 6.37287 6.49081 6.61375 6.79826 7.00466 7.24260 7.55446 7.69190 8.00977 8.18169 8.32788 8.58051 8.99058 9.21727 9.64207 11.11726 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.004365 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.997191 B = 6413.479175 C = 6729.113735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.105 3.895 3 N -0.582 5.582 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.587 3.413 14 O -0.539 6.539 15 C 0.000 4.000 16 C -0.183 4.183 17 C -0.027 4.027 18 N -0.291 5.291 19 C 0.127 3.873 20 C -0.111 4.111 21 C -0.145 4.145 22 C -0.148 4.148 23 N -0.254 5.254 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.392 -12.312 17.999 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.313 5.313 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.372 3.628 14 O -0.415 6.415 15 C -0.161 4.161 16 C -0.211 4.211 17 C -0.170 4.170 18 N -0.079 5.079 19 C 0.006 3.994 20 C -0.130 4.130 21 C -0.203 4.203 22 C -0.205 4.205 23 N -0.089 5.089 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.191 0.809 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.594 -12.631 17.240 23.854 hybrid contribution 1.278 0.460 0.282 1.387 sum -9.316 -12.172 17.522 23.280 Atomic orbital electron populations 1.22061 0.97003 1.00724 1.01451 1.21646 0.93485 0.83743 1.03080 1.48114 1.61731 1.13412 1.08007 1.19320 0.95185 0.94552 0.78325 1.21464 0.94989 1.33523 1.06337 0.92444 1.24930 0.98235 0.94976 0.95962 1.69943 1.36149 1.35351 1.12014 0.86499 0.85052 0.77652 0.78239 1.20697 1.21107 1.19900 1.16944 0.78464 0.85691 0.81712 1.90748 1.48734 1.15746 1.86259 1.22424 1.05851 0.91873 0.95934 1.21762 1.07237 1.01221 0.90920 1.22727 1.06582 0.88929 0.98730 1.45663 1.45463 1.13089 1.03636 1.22054 0.96103 0.82538 0.98673 1.21453 0.93054 0.95994 1.02529 1.21781 1.01778 0.95408 1.01295 1.21828 0.98943 0.98849 1.00872 1.73790 1.18923 1.16967 0.99214 0.92818 0.92961 0.93142 0.90840 0.89316 0.94872 0.93698 0.92789 0.82479 0.80881 0.89190 0.88413 0.88981 0.92499 0.91843 0.92186 0.92206 0.92763 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.74 37.16 0.36 -2.11 16 2 C 0.10 1.98 5.71 -4.04 -0.02 1.96 16 3 N -0.58 -13.67 2.47 -176.23 -0.44 -14.10 16 4 C 0.25 6.78 5.16 -5.20 -0.03 6.75 16 5 C -0.52 -15.50 9.39 -34.44 -0.32 -15.82 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.90 22.48 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.59 13.89 7.62 -12.39 -0.09 13.79 16 14 O -0.54 -14.71 16.49 5.30 0.09 -14.62 16 15 C 0.00 -0.01 6.64 -82.76 -0.55 -0.56 16 16 C -0.18 -2.89 10.81 -39.36 -0.43 -3.31 16 17 C -0.03 -0.32 11.40 -17.17 -0.20 -0.51 16 18 N -0.29 -3.49 2.86 -61.33 -0.18 -3.67 16 19 C 0.13 0.98 5.79 -4.04 -0.02 0.96 16 20 C -0.11 -0.85 2.95 -90.62 -0.27 -1.12 16 21 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 22 C -0.15 -1.19 9.08 37.16 0.34 -0.86 16 23 N -0.25 -3.97 6.88 33.42 0.23 -3.74 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.86 7.04 -51.93 -0.37 0.49 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 28 H 0.09 1.60 5.37 -51.93 -0.28 1.32 16 29 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 1.38 7.37 -51.93 -0.38 1.00 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.16 2.38 8.06 -52.49 -0.42 1.95 16 33 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.49 8.04 -51.93 -0.42 0.07 16 36 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -34.98 348.79 -7.18 -42.16 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.87 Total: -2.59 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.99 Total: 0.41 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.36 Total: -48.07 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.98 -7.18 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.957 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds