Wall clock time and date at job start Tue Mar 31 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 N 1.46905 * 109.47083 * 173.79571 * 3 2 1 5 5 C 1.46898 * 111.00158 * 72.38776 * 4 3 2 6 6 C 1.50701 * 109.47350 * 283.49257 * 5 4 3 7 7 H 1.08008 * 119.99853 * 354.44309 * 6 5 4 8 8 C 1.37878 * 120.00222 * 174.44617 * 6 5 4 9 9 N 1.31507 * 119.99889 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00162 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47107 * 89.99618 * 10 8 6 12 12 H 1.48494 * 109.47209 * 210.00064 * 10 8 6 13 13 H 1.48503 * 109.46914 * 330.00226 * 10 8 6 14 14 C 1.46895 * 110.99892 * 196.34678 * 4 3 2 15 15 C 1.50691 * 109.47545 * 71.53277 * 14 4 3 16 16 C 1.38247 * 119.97263 * 261.32207 * 15 14 4 17 17 C 1.50697 * 119.98744 * 0.02562 * 16 15 14 18 18 C 1.38198 * 120.02524 * 179.76524 * 16 15 14 19 19 C 1.38467 * 119.97335 * 0.50899 * 18 16 15 20 20 F 1.35099 * 120.02553 * 179.76540 * 19 18 16 21 21 C 1.38459 * 119.94701 * 359.74431 * 19 18 16 22 22 C 1.38201 * 119.97309 * 359.97438 * 21 19 18 23 23 C 1.50702 * 119.98027 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.46974 * 299.99858 * 1 2 3 25 25 H 1.08994 * 109.47381 * 60.00220 * 1 2 3 26 26 H 1.09000 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47204 * 239.99936 * 2 1 3 28 28 H 1.09000 * 109.47157 * 120.00440 * 2 1 3 29 29 H 1.08994 * 109.47034 * 53.79560 * 3 2 1 30 30 H 1.08995 * 109.47162 * 293.79346 * 3 2 1 31 31 H 1.08999 * 109.46722 * 43.48662 * 5 4 3 32 32 H 1.08999 * 109.47390 * 163.49247 * 5 4 3 33 33 H 0.97004 * 120.00488 * 180.02562 * 9 8 6 34 34 H 1.09008 * 109.46610 * 191.53595 * 14 4 3 35 35 H 1.08995 * 109.47070 * 311.52528 * 14 4 3 36 36 H 1.09002 * 109.46938 * 90.63745 * 17 16 15 37 37 H 1.09001 * 109.47335 * 210.63984 * 17 16 15 38 38 H 1.08998 * 109.47458 * 330.63848 * 17 16 15 39 39 H 1.07995 * 120.01497 * 180.24972 * 18 16 15 40 40 H 1.08001 * 120.01152 * 180.02562 * 21 19 18 41 41 H 1.08997 * 109.47255 * 269.97539 * 23 22 21 42 42 H 1.08998 * 109.47493 * 29.98195 * 23 22 21 43 43 H 1.09007 * 109.46672 * 149.98394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5014 1.4453 0.1497 5 6 4.1575 0.9845 -1.0812 6 6 4.0406 -0.5146 -1.1819 7 1 3.6101 -1.0786 -0.3676 8 6 4.4832 -1.1661 -2.3136 9 7 5.0069 -0.4794 -3.3053 10 14 4.3388 -3.0244 -2.4382 11 1 3.0315 -3.3797 -3.0464 12 1 5.4386 -3.5506 -3.2859 13 1 4.4316 -3.6201 -1.0810 14 6 3.9881 2.7753 0.5396 15 6 3.5998 3.0532 1.9689 16 6 2.4849 3.8228 2.2446 17 6 1.6584 4.3828 1.1158 18 6 2.1251 4.0744 3.5549 19 6 2.8877 3.5640 4.5919 20 9 2.5396 3.8132 5.8733 21 6 4.0070 2.7977 4.3145 22 6 4.3616 2.5427 3.0033 23 6 5.5795 1.7081 2.7013 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5888 1.9873 0.8292 30 1 1.7702 1.9232 -0.9403 31 1 3.6762 1.4452 -1.9438 32 1 5.2103 1.2661 -1.0590 33 1 5.3180 -0.9376 -4.1016 34 1 5.0736 2.8069 0.4452 35 1 3.5448 3.5294 -0.1106 36 1 0.8695 3.6763 0.8579 37 1 1.2127 5.3280 1.4259 38 1 2.2952 4.5493 0.2469 39 1 1.2519 4.6722 3.7701 40 1 4.6023 2.3987 5.1225 41 1 6.4525 2.3556 2.6196 42 1 5.7350 0.9881 3.5046 43 1 5.4319 1.1771 1.7608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237324092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:47 Heat of formation + Delta-G solvation = -32.408765 kcal Electronic energy + Delta-G solvation = -22559.190869 eV Core-core repulsion = 19325.228489 eV Total energy + Delta-G solvation = -3233.962380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.77069 -39.75063 -36.83875 -33.58303 -32.94394 -32.64013 -31.07329 -28.02736 -27.08698 -26.63369 -25.71231 -23.76802 -21.44463 -20.81640 -20.69724 -19.68510 -16.75502 -16.68866 -16.38740 -15.60837 -15.28812 -15.10352 -14.58037 -14.10433 -14.04550 -13.54874 -13.32632 -13.10267 -13.04789 -12.89501 -12.75147 -12.35908 -12.26302 -11.88407 -11.63689 -11.30714 -11.23290 -11.12266 -11.02014 -10.99046 -10.78909 -10.55080 -10.48160 -10.13950 -9.98202 -9.41761 -9.14276 -8.55696 -8.40854 -8.24146 -7.26578 -6.03012 -4.01441 1.32927 1.37888 3.30565 3.37740 3.41497 3.67627 4.35615 4.42120 4.78451 4.89535 4.99069 5.12707 5.24672 5.31111 5.35672 5.55954 5.61003 5.74878 5.75149 5.79144 5.83138 5.94892 5.98978 6.03036 6.05999 6.15199 6.19749 6.23903 6.34036 6.37167 6.53683 6.55957 6.59530 6.65297 6.88172 7.01102 7.11360 7.17757 7.33955 7.41741 7.83325 8.10297 8.18701 8.53284 9.05016 9.60159 11.07250 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.004932 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.201257 B = 5675.863111 C = 6033.719553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.069 3.931 4 N -0.528 5.528 5 C 0.191 3.809 6 C -0.499 4.499 7 H 0.072 0.928 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.085 3.915 15 C -0.073 4.073 16 C -0.051 4.051 17 C -0.122 4.122 18 C -0.166 4.166 19 C 0.093 3.907 20 F -0.147 7.147 21 C -0.165 4.165 22 C -0.026 4.026 23 C -0.124 4.124 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.020 0.980 31 H -0.002 1.002 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 8.356 10.629 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.059 4.059 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.090 0.910 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.042 4.042 15 C -0.074 4.074 16 C -0.052 4.052 17 C -0.179 4.179 18 C -0.185 4.185 19 C 0.073 3.927 20 F -0.126 7.126 21 C -0.184 4.184 22 C -0.027 4.027 23 C -0.180 4.180 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.349 8.008 10.849 14.168 hybrid contribution -0.369 -0.373 -0.458 0.697 sum -4.718 7.634 10.391 13.730 Atomic orbital electron populations 1.21798 0.97929 1.00652 1.00343 1.21858 0.92624 0.97308 1.04678 1.22074 0.88646 0.97184 0.98046 1.62147 1.04787 1.20630 1.37705 1.19824 0.93577 0.96046 0.83926 1.21285 1.39166 0.91532 1.01776 0.91044 1.24978 0.95626 0.98206 0.95873 1.69951 1.41790 1.35494 1.06702 0.86594 0.77596 0.85776 0.78083 1.20769 1.21388 1.19750 1.21094 1.00518 0.92281 0.90329 1.19770 0.94546 0.96897 0.96203 1.19570 0.95153 0.96779 0.93718 1.21028 0.99583 1.00577 0.96664 1.20834 1.01443 1.04475 0.91701 1.17597 0.96420 1.00431 0.78210 1.91456 1.91936 1.92918 1.36310 1.20962 0.97740 1.02102 0.97610 1.19609 0.96670 0.95299 0.91105 1.20947 0.93769 0.98615 1.04673 0.94057 0.93539 0.93392 0.88216 0.92293 0.92617 0.96156 0.98462 0.95865 0.93025 0.90265 0.94432 0.90384 0.91742 0.90602 0.85412 0.85271 0.91493 0.91871 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.41 4.68 -26.73 -0.13 -2.53 16 3 C 0.07 1.27 4.35 -3.82 -0.02 1.25 16 4 N -0.53 -10.50 3.87 -237.53 -0.92 -11.42 16 5 C 0.19 4.62 4.77 -4.98 -0.02 4.60 16 6 C -0.50 -13.04 6.84 -34.44 -0.24 -13.28 16 7 H 0.07 1.86 6.15 -52.48 -0.32 1.54 16 8 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 9 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 10 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.09 1.44 4.00 -4.98 -0.02 1.42 16 15 C -0.07 -1.13 4.86 -104.62 -0.51 -1.64 16 16 C -0.05 -0.72 5.12 -104.63 -0.54 -1.25 16 17 C -0.12 -1.45 8.67 36.00 0.31 -1.14 16 18 C -0.17 -2.21 9.69 -39.51 -0.38 -2.60 16 19 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 20 F -0.15 -2.08 17.27 2.25 0.04 -2.04 16 21 C -0.17 -2.31 9.68 -39.51 -0.38 -2.69 16 22 C -0.03 -0.39 5.88 -104.63 -0.62 -1.00 16 23 C -0.12 -1.75 9.24 36.01 0.33 -1.42 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.10 2.20 5.54 -51.93 -0.29 1.91 16 28 H 0.06 1.16 7.98 -51.93 -0.41 0.74 16 29 H 0.06 0.93 4.30 -51.93 -0.22 0.71 16 30 H 0.02 0.39 7.80 -51.93 -0.41 -0.02 16 31 H 0.00 -0.07 7.76 -51.93 -0.40 -0.47 16 32 H 0.02 0.60 7.64 -51.93 -0.40 0.20 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.34 6.74 -51.92 -0.35 0.99 16 35 H 0.04 0.61 5.55 -51.93 -0.29 0.32 16 36 H 0.08 0.94 6.62 -51.93 -0.34 0.59 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.08 0.93 5.85 -51.93 -0.30 0.62 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.10 1.69 6.41 -51.92 -0.33 1.36 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -27.71 337.22 -8.88 -36.59 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.58 Total: 0.67 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.22 Total: -19.84 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.18 Total: -36.43 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.71 -8.88 -36.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237324092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.185 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds