Wall clock time and date at job start Tue Mar 31 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 N 1.46905 * 109.47083 * 173.79571 * 3 2 1 5 5 C 1.46898 * 111.00158 * 72.38776 * 4 3 2 6 6 C 1.50701 * 109.47350 * 283.49257 * 5 4 3 7 7 H 1.08008 * 119.99853 * 354.44309 * 6 5 4 8 8 C 1.37878 * 120.00222 * 174.44617 * 6 5 4 9 9 N 1.31507 * 119.99889 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00162 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47107 * 89.99618 * 10 8 6 12 12 H 1.48494 * 109.47209 * 210.00064 * 10 8 6 13 13 H 1.48503 * 109.46914 * 330.00226 * 10 8 6 14 14 C 1.46895 * 110.99892 * 196.34678 * 4 3 2 15 15 C 1.50691 * 109.47545 * 71.53277 * 14 4 3 16 16 C 1.38247 * 119.97263 * 261.32207 * 15 14 4 17 17 C 1.50697 * 119.98744 * 0.02562 * 16 15 14 18 18 C 1.38198 * 120.02524 * 179.76524 * 16 15 14 19 19 C 1.38467 * 119.97335 * 0.50899 * 18 16 15 20 20 F 1.35099 * 120.02553 * 179.76540 * 19 18 16 21 21 C 1.38459 * 119.94701 * 359.74431 * 19 18 16 22 22 C 1.38201 * 119.97309 * 359.97438 * 21 19 18 23 23 C 1.50702 * 119.98027 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.46974 * 299.99858 * 1 2 3 25 25 H 1.08994 * 109.47381 * 60.00220 * 1 2 3 26 26 H 1.09000 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47204 * 239.99936 * 2 1 3 28 28 H 1.09000 * 109.47157 * 120.00440 * 2 1 3 29 29 H 1.08994 * 109.47034 * 53.79560 * 3 2 1 30 30 H 1.08995 * 109.47162 * 293.79346 * 3 2 1 31 31 H 1.08999 * 109.46722 * 43.48662 * 5 4 3 32 32 H 1.08999 * 109.47390 * 163.49247 * 5 4 3 33 33 H 0.97004 * 120.00488 * 180.02562 * 9 8 6 34 34 H 1.09008 * 109.46610 * 191.53595 * 14 4 3 35 35 H 1.08995 * 109.47070 * 311.52528 * 14 4 3 36 36 H 1.09002 * 109.46938 * 90.63745 * 17 16 15 37 37 H 1.09001 * 109.47335 * 210.63984 * 17 16 15 38 38 H 1.08998 * 109.47458 * 330.63848 * 17 16 15 39 39 H 1.07995 * 120.01497 * 180.24972 * 18 16 15 40 40 H 1.08001 * 120.01152 * 180.02562 * 21 19 18 41 41 H 1.08997 * 109.47255 * 269.97539 * 23 22 21 42 42 H 1.08998 * 109.47493 * 29.98195 * 23 22 21 43 43 H 1.09007 * 109.46672 * 149.98394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5014 1.4453 0.1497 5 6 4.1575 0.9845 -1.0812 6 6 4.0406 -0.5146 -1.1819 7 1 3.6101 -1.0786 -0.3676 8 6 4.4832 -1.1661 -2.3136 9 7 5.0069 -0.4794 -3.3053 10 14 4.3388 -3.0244 -2.4382 11 1 3.0315 -3.3797 -3.0464 12 1 5.4386 -3.5506 -3.2859 13 1 4.4316 -3.6201 -1.0810 14 6 3.9881 2.7753 0.5396 15 6 3.5998 3.0532 1.9689 16 6 2.4849 3.8228 2.2446 17 6 1.6584 4.3828 1.1158 18 6 2.1251 4.0744 3.5549 19 6 2.8877 3.5640 4.5919 20 9 2.5396 3.8132 5.8733 21 6 4.0070 2.7977 4.3145 22 6 4.3616 2.5427 3.0033 23 6 5.5795 1.7081 2.7013 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5888 1.9873 0.8292 30 1 1.7702 1.9232 -0.9403 31 1 3.6762 1.4452 -1.9438 32 1 5.2103 1.2661 -1.0590 33 1 5.3180 -0.9376 -4.1016 34 1 5.0736 2.8069 0.4452 35 1 3.5448 3.5294 -0.1106 36 1 0.8695 3.6763 0.8579 37 1 1.2127 5.3280 1.4259 38 1 2.2952 4.5493 0.2469 39 1 1.2519 4.6722 3.7701 40 1 4.6023 2.3987 5.1225 41 1 6.4525 2.3556 2.6196 42 1 5.7350 0.9881 3.5046 43 1 5.4319 1.1771 1.7608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237324092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:46 Heat of formation + Delta-G solvation = -45.693117 kcal Electronic energy + Delta-G solvation = -22559.766922 eV Core-core repulsion = 19325.228489 eV Total energy + Delta-G solvation = -3234.538433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.85804 -40.93102 -38.37564 -34.79558 -34.59398 -34.20627 -32.44502 -29.48975 -28.55442 -27.83530 -27.01621 -25.39337 -23.11212 -22.01967 -21.88314 -21.18078 -18.40253 -17.82779 -17.78948 -16.96441 -16.63612 -16.44287 -16.29752 -15.59719 -15.45460 -14.79403 -14.53524 -14.35347 -14.27562 -14.11374 -13.95106 -13.77885 -13.61932 -13.40116 -13.08956 -12.87821 -12.68032 -12.59572 -12.40369 -12.33998 -12.21804 -12.17543 -11.86896 -11.59400 -11.56414 -11.17121 -11.03176 -10.48135 -9.62031 -9.41419 -8.92064 -8.11592 -6.16130 0.19831 0.30079 1.42920 1.44141 1.54577 2.43348 2.56353 3.20459 3.27644 3.44555 3.75851 3.80701 3.98532 4.14385 4.21003 4.27187 4.40041 4.53812 4.61309 4.64961 4.67806 4.73514 4.78795 4.82481 4.86136 4.86895 4.90167 5.02673 5.08091 5.17552 5.21115 5.27690 5.30476 5.35192 5.42604 5.51047 5.53287 5.73715 5.77678 5.79555 6.01556 6.17214 6.45756 6.70266 6.97212 7.49497 8.98430 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.004932 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.201257 B = 5675.863111 C = 6033.719553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.072 3.928 4 N -0.530 5.530 5 C 0.208 3.792 6 C -0.498 4.498 7 H 0.071 0.929 8 C 0.003 3.997 9 N -0.937 5.937 10 Si 0.954 3.046 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.089 3.911 15 C -0.090 4.090 16 C -0.052 4.052 17 C -0.122 4.122 18 C -0.162 4.162 19 C 0.088 3.912 20 F -0.147 7.147 21 C -0.167 4.167 22 C -0.037 4.037 23 C -0.119 4.119 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.011 0.989 31 H -0.033 1.033 32 H 0.001 0.999 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 8.628 12.367 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.055 4.055 4 N -0.254 5.254 5 C 0.082 3.918 6 C -0.537 4.537 7 H 0.089 0.911 8 C -0.195 4.195 9 N -0.578 5.578 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.190 1.190 14 C -0.038 4.038 15 C -0.091 4.091 16 C -0.053 4.053 17 C -0.178 4.178 18 C -0.181 4.181 19 C 0.069 3.931 20 F -0.126 7.126 21 C -0.186 4.186 22 C -0.037 4.037 23 C -0.175 4.175 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.030 0.970 31 H -0.015 1.015 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.836 8.285 12.610 16.177 hybrid contribution 0.083 -0.379 -0.922 1.001 sum -5.752 7.906 11.687 15.238 Atomic orbital electron populations 1.21718 0.94935 1.01716 1.01560 1.21740 0.95308 0.96907 1.02297 1.22102 0.87700 0.97256 0.98476 1.62072 1.05555 1.22868 1.34934 1.19458 0.92340 0.95222 0.84762 1.21538 1.38102 0.92521 1.01536 0.91122 1.25752 0.95510 1.02532 0.95668 1.70075 1.43207 1.37218 1.07328 0.85606 0.77597 0.80620 0.78199 1.20145 1.21299 1.19036 1.21050 1.00063 0.90786 0.91918 1.19669 0.95948 0.98521 0.94947 1.19756 0.94639 0.96160 0.94707 1.21056 0.99196 1.01813 0.95724 1.21074 1.01901 1.04077 0.91028 1.17752 0.96543 1.00406 0.78440 1.91461 1.91908 1.92890 1.36299 1.21103 0.97968 1.01958 0.97537 1.19703 0.96862 0.95599 0.91572 1.20873 0.94381 0.98890 1.03393 0.92078 0.93016 0.92491 0.91785 0.93292 0.90220 0.97047 1.01545 0.98058 0.93084 0.91131 0.93754 0.90252 0.89107 0.91356 0.82978 0.83615 0.90138 0.90572 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.12 -4.69 4.68 30.60 0.14 -4.54 16 3 C 0.07 2.66 4.35 86.30 0.38 3.03 16 4 N -0.53 -21.51 3.87 -905.40 -3.50 -25.01 16 5 C 0.21 10.52 4.77 85.56 0.41 10.93 16 6 C -0.50 -26.78 6.84 25.60 0.18 -26.61 16 7 H 0.07 3.75 6.15 -2.91 -0.02 3.73 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.94 -55.18 13.29 21.45 0.28 -54.89 16 10 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.09 3.05 4.00 85.56 0.34 3.39 16 15 C -0.09 -2.68 4.86 -19.86 -0.10 -2.78 16 16 C -0.05 -1.32 5.12 -19.87 -0.10 -1.43 16 17 C -0.12 -2.59 8.67 71.23 0.62 -1.97 16 18 C -0.16 -3.83 9.69 22.31 0.22 -3.62 16 19 C 0.09 2.25 7.30 22.38 0.16 2.41 16 20 F -0.15 -3.74 17.27 44.97 0.78 -2.97 16 21 C -0.17 -4.32 9.68 22.31 0.22 -4.10 16 22 C -0.04 -1.05 5.88 -19.87 -0.12 -1.17 16 23 C -0.12 -3.33 9.24 71.24 0.66 -2.67 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 2.87 5.54 -2.38 -0.01 2.86 16 28 H 0.05 1.91 7.98 -2.39 -0.02 1.89 16 29 H 0.08 2.54 4.30 -2.39 -0.01 2.53 16 30 H 0.01 0.44 7.80 -2.39 -0.02 0.42 16 31 H -0.03 -1.86 7.76 -2.39 -0.02 -1.87 16 32 H 0.00 0.07 7.64 -2.39 -0.02 0.05 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.07 2.49 6.74 -2.38 -0.02 2.48 16 35 H 0.04 1.45 5.55 -2.39 -0.01 1.44 16 36 H 0.08 1.68 6.62 -2.39 -0.02 1.67 16 37 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 38 H 0.07 1.56 5.85 -2.39 -0.01 1.55 16 39 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 43 H 0.07 2.36 6.41 -2.38 -0.02 2.35 16 Total: -1.00 -60.23 337.22 4.76 -55.47 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.00 Total: 13.68 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 4.18 Total: -31.92 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -3.22 Total: -79.90 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -60.23 4.76 -55.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237324092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.782 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds