Wall clock time and date at job start Tue Mar 31 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46820 * 2 1 4 4 H 1.09003 * 109.46830 * 305.54729 * 3 2 1 5 5 N 1.46903 * 109.47091 * 65.54201 * 3 2 1 6 6 C 1.46897 * 111.00064 * 207.92752 * 5 3 2 7 7 H 1.08997 * 109.47359 * 324.38478 * 6 5 3 8 8 C 1.53002 * 109.46564 * 84.38076 * 6 5 3 9 9 C 1.52994 * 109.47158 * 204.37898 * 6 5 3 10 10 C 1.50698 * 109.47526 * 65.00347 * 9 6 5 11 11 H 1.08005 * 119.99434 * 359.97438 * 10 9 6 12 12 C 1.37866 * 120.00248 * 180.27231 * 10 9 6 13 13 N 1.31518 * 120.00525 * 359.72878 * 12 10 9 14 14 Si 1.86807 * 119.99919 * 179.72458 * 12 10 9 15 15 H 1.48502 * 109.47192 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46736 * 120.00209 * 14 12 10 17 17 H 1.48496 * 109.47182 * 239.99888 * 14 12 10 18 18 C 1.50694 * 109.46910 * 185.54985 * 3 2 1 19 19 C 1.38266 * 119.98594 * 279.71740 * 18 3 2 20 20 C 1.38224 * 120.05396 * 179.77012 * 19 18 3 21 21 C 1.38219 * 120.02358 * 0.51003 * 20 19 18 22 22 C 1.50695 * 120.01311 * 179.72208 * 21 20 19 23 23 C 1.38438 * 119.97197 * 359.74866 * 21 20 19 24 24 F 1.35099 * 120.02434 * 179.97438 * 23 21 20 25 25 C 1.38175 * 119.99130 * 100.00171 * 18 3 2 26 26 H 1.08999 * 109.47561 * 59.78372 * 1 2 3 27 27 H 1.09009 * 109.46960 * 179.78425 * 1 2 3 28 28 H 1.08998 * 109.47603 * 299.78194 * 1 2 3 29 29 H 1.09001 * 109.46871 * 240.00393 * 2 1 3 30 30 H 1.08993 * 109.47319 * 119.99547 * 2 1 3 31 31 H 1.00895 * 110.99920 * 331.89170 * 5 3 2 32 32 H 1.09001 * 109.47104 * 183.93214 * 8 6 5 33 33 H 1.09003 * 109.47407 * 303.93161 * 8 6 5 34 34 H 1.09003 * 109.47272 * 63.92985 * 8 6 5 35 35 H 1.09007 * 109.47536 * 305.00226 * 9 6 5 36 36 H 1.08998 * 109.47087 * 185.00728 * 9 6 5 37 37 H 0.96994 * 120.00549 * 179.97438 * 13 12 10 38 38 H 1.08006 * 119.97542 * 0.03155 * 19 18 3 39 39 H 1.08002 * 119.98808 * 180.26329 * 20 19 18 40 40 H 1.09001 * 109.47472 * 270.02034 * 22 21 20 41 41 H 1.09006 * 109.47204 * 30.02899 * 22 21 20 42 42 H 1.09004 * 109.47242 * 150.02265 * 22 21 20 43 43 H 1.08001 * 120.00950 * 359.97438 * 25 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5977 1.9842 -0.8362 5 7 1.6625 2.0954 1.2607 6 6 1.5144 3.5455 1.0790 7 1 2.2537 3.8990 0.3602 8 6 0.1090 3.8532 0.5582 9 6 1.7276 4.2519 2.4192 10 6 3.1506 4.0503 2.8726 11 1 3.8344 3.4754 2.2656 12 6 3.5778 4.5946 4.0651 13 7 2.7451 5.2942 4.8045 14 14 5.3396 4.3381 4.6307 15 1 6.0680 3.5216 3.6268 16 1 6.0093 5.6556 4.7766 17 1 5.3422 3.6341 5.9382 18 6 3.5406 1.4448 -0.1374 19 6 4.3361 1.2058 0.9679 20 6 5.7126 1.2028 0.8426 21 6 6.2957 1.4493 -0.3862 22 6 7.7966 1.4522 -0.5213 23 6 5.5003 1.6941 -1.4925 24 9 6.0691 1.9356 -2.6939 25 6 4.1213 1.6916 -1.3667 26 1 -0.3634 0.5172 -0.8880 27 1 -0.3633 -1.0278 -0.0039 28 1 -0.3634 0.5104 0.8919 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.8196 1.6903 1.6394 32 1 0.0218 4.9209 0.3570 33 1 -0.0683 3.2947 -0.3610 34 1 -0.6277 3.5632 1.3073 35 1 1.0472 3.8352 3.1619 36 1 1.5306 5.3177 2.3036 37 1 3.0455 5.6768 5.6436 38 1 3.8815 1.0170 1.9293 39 1 6.3329 1.0117 1.7058 40 1 8.1755 2.4587 -0.3437 41 1 8.2284 0.7672 0.2085 42 1 8.0715 1.1326 -1.5265 43 1 3.4998 1.8824 -2.2291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307641826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:38 Heat of formation + Delta-G solvation = -45.049675 kcal Electronic energy + Delta-G solvation = -22532.578642 eV Core-core repulsion = 19298.068111 eV Total energy + Delta-G solvation = -3234.510531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.63417 -39.33523 -37.15830 -34.25329 -32.40758 -32.10662 -30.18451 -29.29081 -27.36657 -27.03861 -24.39864 -22.98103 -22.50677 -21.60463 -19.94921 -19.69974 -16.71929 -16.41758 -16.16751 -15.42762 -15.38169 -14.96795 -14.81109 -14.37363 -13.98776 -13.53174 -13.26547 -13.24182 -13.05198 -12.74702 -12.66454 -12.36536 -11.99409 -11.85658 -11.75088 -11.52586 -11.42919 -11.28130 -11.06688 -10.86213 -10.70998 -10.53199 -10.48719 -10.31598 -10.01899 -9.24511 -8.93626 -8.51739 -8.23093 -8.09974 -7.63098 -5.84893 -3.81521 1.51064 1.59062 3.38366 3.46277 3.50346 3.92152 4.43346 4.58684 4.74267 4.90691 5.01137 5.12368 5.19244 5.22548 5.40524 5.47564 5.52872 5.67594 5.69731 5.74902 5.76874 5.81656 5.88232 5.92242 5.94244 5.97235 6.04829 6.16391 6.25447 6.33133 6.44663 6.45931 6.52990 6.64061 6.79095 6.96176 7.07489 7.30101 7.58763 7.71948 8.02914 8.09777 8.19957 8.64439 9.25183 9.79653 11.27561 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.007908 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.301097 B = 3539.823885 C = 5329.468247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.125 3.875 4 H 0.048 0.952 5 N -0.657 5.657 6 C 0.090 3.910 7 H 0.063 0.937 8 C -0.180 4.180 9 C 0.033 3.967 10 C -0.483 4.483 11 H 0.065 0.935 12 C 0.049 3.951 13 N -0.905 5.905 14 Si 0.882 3.118 15 H -0.271 1.271 16 H -0.289 1.289 17 H -0.288 1.288 18 C -0.044 4.044 19 C -0.071 4.071 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.110 4.110 23 C 0.082 3.918 24 F -0.148 7.148 25 C -0.151 4.151 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.336 0.664 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.255 0.745 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -10.710 -11.327 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.014 3.986 4 H 0.066 0.934 5 N -0.289 5.289 6 C -0.019 4.019 7 H 0.082 0.918 8 C -0.239 4.239 9 C -0.004 4.004 10 C -0.522 4.522 11 H 0.083 0.917 12 C -0.150 4.150 13 N -0.547 5.547 14 Si 0.711 3.289 15 H -0.196 1.196 16 H -0.216 1.216 17 H -0.214 1.214 18 C -0.045 4.045 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.167 4.167 23 C 0.063 3.937 24 F -0.126 7.126 25 C -0.171 4.171 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.318 -10.565 -10.982 15.296 hybrid contribution 0.214 0.242 -0.253 0.410 sum 1.532 -10.323 -11.234 15.334 Atomic orbital electron populations 1.21833 0.95845 1.01610 1.01896 1.21702 0.95567 0.95966 1.02759 1.20405 0.90554 0.94392 0.93228 0.93442 1.60535 1.40258 1.04064 1.24054 1.21818 0.92826 0.86726 1.00559 0.91841 1.22564 1.00043 1.01539 0.99749 1.19104 0.97468 0.94169 0.89660 1.21263 0.96104 1.30493 1.04331 0.91721 1.24992 0.96853 0.95971 0.97141 1.69972 1.34652 1.36419 1.13635 0.86678 0.86019 0.77683 0.78535 1.19559 1.21564 1.21409 1.19681 0.95810 0.97172 0.91871 1.21172 0.92305 0.96018 0.99392 1.20976 0.95438 0.99562 0.95745 1.19841 0.96217 1.03692 0.93006 1.20676 0.90990 1.02587 1.02456 1.17367 0.91149 1.04795 0.80422 1.91423 1.85423 1.92284 1.43504 1.20882 0.92621 1.04723 0.98830 0.93005 0.92615 0.92237 0.91721 0.90740 0.84397 0.92628 0.94411 0.92995 0.96563 0.96636 0.93518 0.83904 0.85600 0.91111 0.91306 0.91724 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.75 37.16 0.36 -1.24 16 2 C -0.12 -1.45 5.47 -26.73 -0.15 -1.59 16 3 C 0.12 1.81 2.01 -68.86 -0.14 1.67 16 4 H 0.05 0.69 6.92 -51.93 -0.36 0.33 16 5 N -0.66 -11.25 5.01 -100.96 -0.51 -11.76 16 6 C 0.09 1.75 2.34 -67.72 -0.16 1.59 16 7 H 0.06 1.33 7.75 -51.93 -0.40 0.92 16 8 C -0.18 -2.93 9.16 37.16 0.34 -2.59 16 9 C 0.03 0.83 4.65 -27.89 -0.13 0.70 16 10 C -0.48 -13.20 8.84 -34.45 -0.30 -13.50 16 11 H 0.06 1.74 6.68 -52.48 -0.35 1.39 16 12 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 13 N -0.91 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.88 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 C -0.04 -0.71 4.76 -104.64 -0.50 -1.20 16 19 C -0.07 -1.20 8.29 -39.58 -0.33 -1.53 16 20 C -0.10 -1.59 9.70 -39.59 -0.38 -1.98 16 21 C -0.13 -1.95 5.89 -104.56 -0.62 -2.57 16 22 C -0.11 -1.39 9.84 36.00 0.35 -1.04 16 23 C 0.08 1.30 7.24 -39.42 -0.29 1.01 16 24 F -0.15 -2.30 16.48 2.25 0.04 -2.26 16 25 C -0.15 -2.33 9.65 -39.52 -0.38 -2.71 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.65 6.48 -51.93 -0.34 0.31 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.34 5.34 6.25 -39.29 -0.25 5.09 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.53 7.38 -51.93 -0.38 0.15 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 2.56 7.71 -52.48 -0.40 2.16 16 39 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.06 0.75 7.64 -51.93 -0.40 0.36 16 43 H 0.13 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -29.70 351.25 -8.95 -38.65 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.08 Total: 3.45 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -2.41 Total: -23.67 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.23 Total: -38.30 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.70 -8.95 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307641826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.401 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds