Wall clock time and date at job start Tue Mar 31 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46820 * 2 1 4 4 H 1.09003 * 109.46830 * 305.54729 * 3 2 1 5 5 N 1.46903 * 109.47091 * 65.54201 * 3 2 1 6 6 C 1.46897 * 111.00064 * 207.92752 * 5 3 2 7 7 H 1.08997 * 109.47359 * 324.38478 * 6 5 3 8 8 C 1.53002 * 109.46564 * 84.38076 * 6 5 3 9 9 C 1.52994 * 109.47158 * 204.37898 * 6 5 3 10 10 C 1.50698 * 109.47526 * 65.00347 * 9 6 5 11 11 H 1.08005 * 119.99434 * 359.97438 * 10 9 6 12 12 C 1.37866 * 120.00248 * 180.27231 * 10 9 6 13 13 N 1.31518 * 120.00525 * 359.72878 * 12 10 9 14 14 Si 1.86807 * 119.99919 * 179.72458 * 12 10 9 15 15 H 1.48502 * 109.47192 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46736 * 120.00209 * 14 12 10 17 17 H 1.48496 * 109.47182 * 239.99888 * 14 12 10 18 18 C 1.50694 * 109.46910 * 185.54985 * 3 2 1 19 19 C 1.38266 * 119.98594 * 279.71740 * 18 3 2 20 20 C 1.38224 * 120.05396 * 179.77012 * 19 18 3 21 21 C 1.38219 * 120.02358 * 0.51003 * 20 19 18 22 22 C 1.50695 * 120.01311 * 179.72208 * 21 20 19 23 23 C 1.38438 * 119.97197 * 359.74866 * 21 20 19 24 24 F 1.35099 * 120.02434 * 179.97438 * 23 21 20 25 25 C 1.38175 * 119.99130 * 100.00171 * 18 3 2 26 26 H 1.08999 * 109.47561 * 59.78372 * 1 2 3 27 27 H 1.09009 * 109.46960 * 179.78425 * 1 2 3 28 28 H 1.08998 * 109.47603 * 299.78194 * 1 2 3 29 29 H 1.09001 * 109.46871 * 240.00393 * 2 1 3 30 30 H 1.08993 * 109.47319 * 119.99547 * 2 1 3 31 31 H 1.00895 * 110.99920 * 331.89170 * 5 3 2 32 32 H 1.09001 * 109.47104 * 183.93214 * 8 6 5 33 33 H 1.09003 * 109.47407 * 303.93161 * 8 6 5 34 34 H 1.09003 * 109.47272 * 63.92985 * 8 6 5 35 35 H 1.09007 * 109.47536 * 305.00226 * 9 6 5 36 36 H 1.08998 * 109.47087 * 185.00728 * 9 6 5 37 37 H 0.96994 * 120.00549 * 179.97438 * 13 12 10 38 38 H 1.08006 * 119.97542 * 0.03155 * 19 18 3 39 39 H 1.08002 * 119.98808 * 180.26329 * 20 19 18 40 40 H 1.09001 * 109.47472 * 270.02034 * 22 21 20 41 41 H 1.09006 * 109.47204 * 30.02899 * 22 21 20 42 42 H 1.09004 * 109.47242 * 150.02265 * 22 21 20 43 43 H 1.08001 * 120.00950 * 359.97438 * 25 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5977 1.9842 -0.8362 5 7 1.6625 2.0954 1.2607 6 6 1.5144 3.5455 1.0790 7 1 2.2537 3.8990 0.3602 8 6 0.1090 3.8532 0.5582 9 6 1.7276 4.2519 2.4192 10 6 3.1506 4.0503 2.8726 11 1 3.8344 3.4754 2.2656 12 6 3.5778 4.5946 4.0651 13 7 2.7451 5.2942 4.8045 14 14 5.3396 4.3381 4.6307 15 1 6.0680 3.5216 3.6268 16 1 6.0093 5.6556 4.7766 17 1 5.3422 3.6341 5.9382 18 6 3.5406 1.4448 -0.1374 19 6 4.3361 1.2058 0.9679 20 6 5.7126 1.2028 0.8426 21 6 6.2957 1.4493 -0.3862 22 6 7.7966 1.4522 -0.5213 23 6 5.5003 1.6941 -1.4925 24 9 6.0691 1.9356 -2.6939 25 6 4.1213 1.6916 -1.3667 26 1 -0.3634 0.5172 -0.8880 27 1 -0.3633 -1.0278 -0.0039 28 1 -0.3634 0.5104 0.8919 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.8196 1.6903 1.6394 32 1 0.0218 4.9209 0.3570 33 1 -0.0683 3.2947 -0.3610 34 1 -0.6277 3.5632 1.3073 35 1 1.0472 3.8352 3.1619 36 1 1.5306 5.3177 2.3036 37 1 3.0455 5.6768 5.6436 38 1 3.8815 1.0170 1.9293 39 1 6.3329 1.0117 1.7058 40 1 8.1755 2.4587 -0.3437 41 1 8.2284 0.7672 0.2085 42 1 8.0715 1.1326 -1.5265 43 1 3.4998 1.8824 -2.2291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307641826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:37 Heat of formation + Delta-G solvation = -59.967710 kcal Electronic energy + Delta-G solvation = -22533.225536 eV Core-core repulsion = 19298.068111 eV Total energy + Delta-G solvation = -3235.157426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.84657 -40.55587 -38.47924 -35.77283 -34.19518 -33.32814 -31.40469 -30.61647 -29.12756 -28.28125 -25.51048 -24.89965 -23.73043 -22.68402 -21.34786 -21.12034 -18.32009 -17.92248 -17.59892 -16.63964 -16.63560 -16.52322 -16.21885 -15.90212 -15.28805 -14.65771 -14.52622 -14.35725 -14.32671 -14.21622 -13.97450 -13.54355 -13.50689 -13.19799 -13.10422 -12.94705 -12.82871 -12.58660 -12.53693 -12.31460 -12.23150 -11.91066 -11.83310 -11.68180 -11.56914 -11.06018 -10.99561 -10.44612 -9.73691 -9.32878 -9.00068 -8.04453 -6.06927 0.30651 0.34915 1.40772 1.42656 1.54788 2.50373 2.69459 3.20634 3.30662 3.51015 3.77616 3.88362 4.06392 4.13991 4.23220 4.32216 4.34091 4.46034 4.48578 4.51816 4.61324 4.72353 4.74046 4.76653 4.87913 4.95994 4.99039 5.13375 5.16568 5.21095 5.24478 5.27275 5.30552 5.33911 5.47847 5.53809 5.60056 5.68393 5.81504 5.96964 6.08004 6.40946 6.55212 6.81471 7.08758 7.58294 9.08322 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.007908 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.301097 B = 3539.823885 C = 5329.468247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.129 3.871 4 H 0.055 0.945 5 N -0.669 5.669 6 C 0.104 3.896 7 H 0.050 0.950 8 C -0.170 4.170 9 C 0.038 3.962 10 C -0.484 4.484 11 H 0.068 0.932 12 C -0.008 4.008 13 N -0.944 5.944 14 Si 0.943 3.057 15 H -0.257 1.257 16 H -0.290 1.290 17 H -0.285 1.285 18 C -0.053 4.053 19 C -0.087 4.087 20 C -0.110 4.110 21 C -0.132 4.132 22 C -0.110 4.110 23 C 0.070 3.930 24 F -0.147 7.147 25 C -0.153 4.153 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.343 0.657 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.054 0.946 35 H -0.008 1.008 36 H -0.014 1.014 37 H 0.255 0.745 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -12.035 -12.781 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.073 0.927 5 N -0.302 5.302 6 C -0.006 4.006 7 H 0.068 0.932 8 C -0.229 4.229 9 C 0.000 4.000 10 C -0.523 4.523 11 H 0.086 0.914 12 C -0.203 4.203 13 N -0.588 5.588 14 Si 0.770 3.230 15 H -0.180 1.180 16 H -0.217 1.217 17 H -0.211 1.211 18 C -0.054 4.054 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.167 4.167 23 C 0.051 3.949 24 F -0.125 7.125 25 C -0.172 4.172 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.011 0.989 36 H 0.004 0.996 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.831 -11.910 -12.454 17.329 hybrid contribution 0.054 0.643 0.176 0.669 sum 1.884 -11.267 -12.278 16.770 Atomic orbital electron populations 1.21811 0.94505 1.02683 1.01854 1.21649 0.96626 0.93934 1.03055 1.20446 0.89836 0.95874 0.91906 0.92669 1.60315 1.40920 1.02792 1.26137 1.21406 0.94506 0.87836 0.96837 0.93214 1.22427 0.97727 1.01804 1.00956 1.18992 0.95870 0.92909 0.92215 1.21617 0.97214 1.29416 1.04054 0.91410 1.25802 1.00844 0.96027 0.97596 1.70105 1.36664 1.37850 1.14142 0.85700 0.81387 0.77573 0.78333 1.18027 1.21675 1.21072 1.19847 0.96524 0.97147 0.91844 1.21158 0.93028 0.97251 0.99152 1.21150 0.95305 0.99818 0.96551 1.20142 0.97791 1.02790 0.92530 1.20744 0.89090 1.03204 1.03629 1.17560 0.91566 1.05082 0.80660 1.91423 1.85424 1.92301 1.43402 1.21080 0.92812 1.04088 0.99220 0.92289 0.91070 0.92953 0.90439 0.91423 0.83574 0.92968 0.91524 0.92699 0.98923 0.99620 0.93631 0.85509 0.84616 0.90944 0.89555 0.90848 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.75 71.98 0.70 -2.03 16 2 C -0.11 -2.47 5.47 30.60 0.17 -2.30 16 3 C 0.13 3.54 2.01 44.17 0.09 3.63 16 4 H 0.06 1.45 6.92 -2.39 -0.02 1.43 16 5 N -0.67 -22.41 5.01 -473.32 -2.37 -24.78 16 6 C 0.10 4.02 2.34 44.91 0.11 4.12 16 7 H 0.05 2.06 7.75 -2.39 -0.02 2.04 16 8 C -0.17 -5.31 9.16 71.98 0.66 -4.65 16 9 C 0.04 1.92 4.65 29.85 0.14 2.06 16 10 C -0.48 -26.83 8.84 25.60 0.23 -26.61 16 11 H 0.07 3.66 6.68 -2.91 -0.02 3.64 16 12 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 13 N -0.94 -58.20 13.29 21.44 0.28 -57.91 16 14 Si 0.94 45.15 29.54 68.60 2.03 47.18 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 C -0.05 -1.61 4.76 -19.87 -0.09 -1.71 16 19 C -0.09 -2.92 8.29 22.27 0.18 -2.73 16 20 C -0.11 -3.43 9.70 22.26 0.22 -3.21 16 21 C -0.13 -3.85 5.89 -19.82 -0.12 -3.97 16 22 C -0.11 -2.54 9.84 71.23 0.70 -1.83 16 23 C 0.07 2.12 7.24 22.37 0.16 2.28 16 24 F -0.15 -4.30 16.48 44.97 0.74 -3.56 16 25 C -0.15 -4.44 9.65 22.31 0.22 -4.22 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 1.03 6.48 -2.39 -0.02 1.01 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.34 10.60 6.25 -89.70 -0.56 10.04 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.70 7.38 -2.39 -0.02 1.68 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.13 4.58 7.71 -2.91 -0.02 4.56 16 39 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.66 8.09 -2.38 -0.02 1.64 16 42 H 0.07 1.55 7.64 -2.39 -0.02 1.53 16 43 H 0.14 3.53 8.04 -2.91 -0.02 3.51 16 Total: -1.00 -64.09 351.25 4.92 -59.17 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.42 Total: 21.07 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.82 Total: -41.15 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -2.09 Total: -82.70 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.74 Total: -3.56 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.09 4.92 -59.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307641826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.801 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds