Wall clock time and date at job start Tue Mar 31 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45762 * 117.94133 * 2 1 4 4 C 1.52925 * 110.48577 * 199.07498 * 3 2 1 5 5 C 1.53346 * 108.67432 * 309.24842 * 4 3 2 6 6 H 1.08994 * 109.67623 * 307.76446 * 5 4 3 7 7 C 1.52995 * 109.67261 * 187.26228 * 5 4 3 8 8 N 1.46906 * 109.46978 * 175.00111 * 7 5 4 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.08990 * 109.47170 * 54.99770 * 10 9 8 12 12 C 1.47196 * 109.47160 * 294.99517 * 10 9 8 13 13 N 8.03223 * 148.15484 * 109.40652 * 2 1 3 14 14 C 1.53002 * 109.46776 * 174.99873 * 10 9 8 15 15 C 1.50701 * 109.46807 * 184.99822 * 14 10 9 16 16 H 1.07998 * 120.00496 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47029 * 119.99717 * 19 17 15 22 22 H 1.48494 * 109.47080 * 239.99687 * 19 17 15 23 23 C 1.53071 * 108.42523 * 67.53140 * 5 4 3 24 24 C 1.33348 * 117.94898 * 179.97438 * 2 1 3 25 25 O 1.21276 * 118.24717 * 357.80109 * 24 2 1 26 26 H 1.09003 * 109.47432 * 90.00258 * 1 2 3 27 27 H 1.09006 * 109.46858 * 209.99845 * 1 2 3 28 28 H 1.09000 * 109.47586 * 329.99670 * 1 2 3 29 29 H 1.08996 * 109.29920 * 78.76332 * 3 2 1 30 30 H 1.08994 * 109.13433 * 319.27993 * 3 2 1 31 31 H 1.08994 * 109.60112 * 189.48771 * 4 3 2 32 32 H 1.09007 * 109.60174 * 69.00163 * 4 3 2 33 33 H 1.08995 * 109.46859 * 55.00403 * 7 5 4 34 34 H 1.09002 * 109.47639 * 295.00071 * 7 5 4 35 35 H 1.00898 * 110.99995 * 303.95410 * 8 7 5 36 36 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 37 37 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 38 38 H 1.08993 * 109.47416 * 304.99509 * 14 10 9 39 39 H 1.09001 * 109.46966 * 65.00241 * 14 10 9 40 40 H 0.97010 * 119.99808 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.40175 * 71.22517 * 23 5 4 42 42 H 1.08996 * 109.40600 * 190.97201 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1261 -0.4682 5 6 4.2493 -0.0011 0.3396 6 1 4.1093 0.1818 1.4050 7 6 5.7441 -0.0631 0.0197 8 7 6.3884 -1.0627 0.8822 9 6 7.8280 -1.1495 0.6029 10 6 8.4626 -2.1987 1.5179 11 1 7.9391 -3.1474 1.4006 12 6 8.3637 -1.7534 2.9175 13 7 8.2882 -1.4082 3.9972 14 6 9.9350 -2.3788 1.1429 15 6 10.5282 -3.4974 1.9601 16 1 9.9165 -4.0267 2.6756 17 6 11.8524 -3.8445 1.7949 18 7 12.5977 -3.1991 0.9246 19 14 12.5880 -5.2307 2.8083 20 1 11.5488 -5.7904 3.7094 21 1 13.0843 -6.2971 1.9018 22 1 13.7157 -4.7062 3.6196 23 6 3.5839 -1.3238 -0.0486 24 6 2.0900 -1.1779 0.0005 25 8 1.4159 -2.1853 0.0420 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 2.1397 1.6999 1.0090 30 1 1.6259 1.9690 -0.6718 31 1 4.1382 2.0566 -0.3043 32 1 3.6100 0.8727 -1.5283 33 1 6.1943 0.9136 0.1966 34 1 5.8809 -0.3424 -1.0250 35 1 6.2210 -0.8613 1.8566 36 1 8.2924 -0.1801 0.7841 37 1 7.9795 -1.4361 -0.4378 38 1 10.0129 -2.6221 0.0833 39 1 10.4769 -1.4547 1.3444 40 1 13.5293 -3.4435 0.8082 41 1 3.8881 -1.5995 -1.0584 42 1 3.8943 -2.1033 0.6471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336723557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:54 Heat of formation + Delta-G solvation = -28.418427 kcal Electronic energy + Delta-G solvation = -21166.682658 eV Core-core repulsion = 17952.813274 eV Total energy + Delta-G solvation = -3213.869385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69340 -37.87280 -36.82656 -35.65276 -34.23883 -33.24665 -31.41480 -29.90632 -28.24504 -26.51904 -25.15308 -23.82234 -22.44704 -21.90542 -21.12462 -18.94902 -16.88401 -16.83924 -16.59727 -16.49637 -16.06867 -15.42470 -15.13026 -14.72303 -14.55667 -13.99624 -13.53299 -13.42338 -13.34156 -12.99884 -12.90381 -12.63727 -12.43118 -12.24495 -12.08254 -11.96129 -11.70852 -11.42422 -11.27999 -11.11431 -11.02461 -10.96603 -10.75773 -10.51939 -10.28600 -9.82723 -9.55095 -9.22551 -9.00677 -8.47252 -8.39080 -6.10951 -4.13897 2.50838 2.76894 3.28179 3.36433 3.41335 3.54205 3.59792 4.01819 4.31623 4.35636 4.40445 4.42233 4.67695 4.78129 4.92378 4.96451 5.04116 5.15970 5.22378 5.27344 5.34412 5.36959 5.47221 5.48729 5.56233 5.61004 5.62515 5.71157 5.92822 5.99473 6.10125 6.12168 6.33097 6.52398 7.02385 7.20689 7.35373 7.42164 7.51107 7.84512 7.99274 8.21809 8.37765 8.91025 9.51846 10.99965 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.032629 B = 0.002838 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.913863 B = 9864.633551 C =10061.529068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.116 3.884 4 C -0.132 4.132 5 C -0.090 4.090 6 H 0.077 0.923 7 C 0.064 3.936 8 N -0.692 5.692 9 C 0.068 3.932 10 C 0.006 3.994 11 H 0.112 0.888 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 C -0.118 4.118 24 C 0.514 3.486 25 O -0.556 6.556 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.338 0.662 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.101 0.899 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 11.668 -6.756 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.346 5.346 3 C -0.007 4.007 4 C -0.170 4.170 5 C -0.109 4.109 6 H 0.095 0.905 7 C -0.065 4.065 8 N -0.323 5.323 9 C -0.062 4.062 10 C -0.016 4.016 11 H 0.129 0.871 12 C -0.075 4.075 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.158 4.158 24 C 0.303 3.697 25 O -0.434 6.434 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.527 11.142 -5.588 24.015 hybrid contribution 0.966 0.066 0.551 1.114 sum -19.560 11.207 -5.037 23.099 Atomic orbital electron populations 1.21675 0.79895 1.03228 1.01865 1.47289 1.07329 1.06293 1.73719 1.21406 0.93253 0.84490 1.01587 1.21932 0.94279 0.99909 1.00878 1.21297 0.95021 0.94081 1.00488 0.90466 1.21991 0.92226 0.93733 0.98598 1.60571 1.12438 1.50026 1.09263 1.22075 0.85815 0.97638 1.00641 1.19338 1.02320 0.98628 0.81303 0.87059 1.29336 0.90945 0.92094 0.95157 1.81044 1.11216 1.10678 1.12489 1.19167 0.85430 0.97947 0.98104 1.21189 0.95752 1.17303 1.22136 0.92433 1.24957 0.97160 0.96627 0.95272 1.69949 1.07504 1.40890 1.34729 0.86536 0.79251 0.82086 0.80221 1.19653 1.20798 1.21019 1.21633 0.89012 0.99612 1.05497 1.20487 0.91469 0.82443 0.75260 1.90709 1.66625 1.35864 1.50245 0.92786 0.90186 0.91458 0.91672 0.90661 0.89561 0.90581 0.94808 0.90323 0.84417 0.94685 0.88982 0.94185 0.95784 0.92852 0.88083 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.24 59.85 0.61 1.19 16 2 N -0.61 -5.44 3.21 -182.85 -0.59 -6.02 16 3 C 0.12 0.66 6.33 -4.48 -0.03 0.64 16 4 C -0.13 -0.74 5.32 -26.59 -0.14 -0.88 16 5 C -0.09 -0.70 2.40 -90.41 -0.22 -0.92 16 6 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 7 C 0.06 0.57 5.08 -3.82 -0.02 0.55 16 8 N -0.69 -8.09 6.22 -113.78 -0.71 -8.79 16 9 C 0.07 0.93 5.12 -3.82 -0.02 0.91 16 10 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 11 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 12 C 0.24 4.76 12.98 -20.76 -0.27 4.49 16 13 N -0.48 -10.21 18.54 42.16 0.78 -9.42 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.12 -1.16 5.14 -28.10 -0.14 -1.30 16 24 C 0.51 6.03 7.47 -11.87 -0.09 5.94 16 25 O -0.56 -8.82 16.18 5.56 0.09 -8.73 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.76 7.13 -51.93 -0.37 0.39 16 28 H 0.07 0.34 8.01 -51.93 -0.42 -0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.34 4.19 7.81 -39.29 -0.31 3.88 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.10 0.94 8.06 -51.93 -0.42 0.52 16 42 H 0.11 1.27 8.09 -51.93 -0.42 0.85 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -32.37 349.98 -7.45 -39.82 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.95 Total: -2.24 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.06 Total: -1.50 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.22 Total: -48.90 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.37 -7.45 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336723557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.399 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds