Wall clock time and date at job start Tue Mar 31 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45762 * 117.94133 * 2 1 4 4 C 1.52925 * 110.48577 * 199.07498 * 3 2 1 5 5 C 1.53346 * 108.67432 * 309.24842 * 4 3 2 6 6 H 1.08994 * 109.67623 * 307.76446 * 5 4 3 7 7 C 1.52995 * 109.67261 * 187.26228 * 5 4 3 8 8 N 1.46906 * 109.46978 * 175.00111 * 7 5 4 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.08990 * 109.47170 * 54.99770 * 10 9 8 12 12 C 1.47196 * 109.47160 * 294.99517 * 10 9 8 13 13 N 8.03223 * 148.15484 * 109.40652 * 2 1 3 14 14 C 1.53002 * 109.46776 * 174.99873 * 10 9 8 15 15 C 1.50701 * 109.46807 * 184.99822 * 14 10 9 16 16 H 1.07998 * 120.00496 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47029 * 119.99717 * 19 17 15 22 22 H 1.48494 * 109.47080 * 239.99687 * 19 17 15 23 23 C 1.53071 * 108.42523 * 67.53140 * 5 4 3 24 24 C 1.33348 * 117.94898 * 179.97438 * 2 1 3 25 25 O 1.21276 * 118.24717 * 357.80109 * 24 2 1 26 26 H 1.09003 * 109.47432 * 90.00258 * 1 2 3 27 27 H 1.09006 * 109.46858 * 209.99845 * 1 2 3 28 28 H 1.09000 * 109.47586 * 329.99670 * 1 2 3 29 29 H 1.08996 * 109.29920 * 78.76332 * 3 2 1 30 30 H 1.08994 * 109.13433 * 319.27993 * 3 2 1 31 31 H 1.08994 * 109.60112 * 189.48771 * 4 3 2 32 32 H 1.09007 * 109.60174 * 69.00163 * 4 3 2 33 33 H 1.08995 * 109.46859 * 55.00403 * 7 5 4 34 34 H 1.09002 * 109.47639 * 295.00071 * 7 5 4 35 35 H 1.00898 * 110.99995 * 303.95410 * 8 7 5 36 36 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 37 37 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 38 38 H 1.08993 * 109.47416 * 304.99509 * 14 10 9 39 39 H 1.09001 * 109.46966 * 65.00241 * 14 10 9 40 40 H 0.97010 * 119.99808 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.40175 * 71.22517 * 23 5 4 42 42 H 1.08996 * 109.40600 * 190.97201 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1261 -0.4682 5 6 4.2493 -0.0011 0.3396 6 1 4.1093 0.1818 1.4050 7 6 5.7441 -0.0631 0.0197 8 7 6.3884 -1.0627 0.8822 9 6 7.8280 -1.1495 0.6029 10 6 8.4626 -2.1987 1.5179 11 1 7.9391 -3.1474 1.4006 12 6 8.3637 -1.7534 2.9175 13 7 8.2882 -1.4082 3.9972 14 6 9.9350 -2.3788 1.1429 15 6 10.5282 -3.4974 1.9601 16 1 9.9165 -4.0267 2.6756 17 6 11.8524 -3.8445 1.7949 18 7 12.5977 -3.1991 0.9246 19 14 12.5880 -5.2307 2.8083 20 1 11.5488 -5.7904 3.7094 21 1 13.0843 -6.2971 1.9018 22 1 13.7157 -4.7062 3.6196 23 6 3.5839 -1.3238 -0.0486 24 6 2.0900 -1.1779 0.0005 25 8 1.4159 -2.1853 0.0420 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 2.1397 1.6999 1.0090 30 1 1.6259 1.9690 -0.6718 31 1 4.1382 2.0566 -0.3043 32 1 3.6100 0.8727 -1.5283 33 1 6.1943 0.9136 0.1966 34 1 5.8809 -0.3424 -1.0250 35 1 6.2210 -0.8613 1.8566 36 1 8.2924 -0.1801 0.7841 37 1 7.9795 -1.4361 -0.4378 38 1 10.0129 -2.6221 0.0833 39 1 10.4769 -1.4547 1.3444 40 1 13.5293 -3.4435 0.8082 41 1 3.8881 -1.5995 -1.0584 42 1 3.8943 -2.1033 0.6471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336723557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:53 Heat of formation + Delta-G solvation = -49.946463 kcal Electronic energy + Delta-G solvation = -21167.616184 eV Core-core repulsion = 17952.813274 eV Total energy + Delta-G solvation = -3214.802910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46789 -39.02427 -37.89651 -36.67410 -35.66812 -34.74485 -32.90375 -30.60289 -29.29945 -27.83190 -26.06443 -24.75363 -23.59123 -23.47286 -21.90422 -19.62843 -18.52938 -18.23079 -17.58167 -17.39646 -16.84564 -16.67183 -16.40953 -15.82057 -15.49409 -15.03565 -14.70715 -14.61268 -14.22414 -14.12135 -14.11593 -13.79217 -13.64020 -13.39601 -13.10868 -13.05562 -13.00465 -12.67453 -12.52669 -12.47740 -12.34255 -12.05945 -11.95430 -11.74697 -11.61437 -11.35541 -11.13718 -10.66196 -10.55180 -9.70926 -9.30838 -8.19721 -6.27308 1.38698 1.41920 1.52190 1.63128 1.96067 1.98108 2.11245 2.41445 3.15743 3.18259 3.27771 3.61866 3.78384 3.88522 3.97789 4.20883 4.38101 4.42133 4.45369 4.52477 4.56602 4.64590 4.72605 4.78138 4.83549 4.86030 4.93306 5.00505 5.04320 5.05661 5.07335 5.20239 5.40664 5.46956 5.48856 5.64771 5.80445 6.07225 6.23193 6.39201 6.47028 6.77089 6.88451 7.16299 7.41277 8.91288 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.032629 B = 0.002838 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.913863 B = 9864.633551 C =10061.529068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.109 3.891 4 C -0.126 4.126 5 C -0.081 4.081 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.696 5.696 9 C 0.080 3.920 10 C 0.017 3.983 11 H 0.120 0.880 12 C 0.252 3.748 13 N -0.507 5.507 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.285 1.285 23 C -0.113 4.113 24 C 0.506 3.494 25 O -0.610 6.610 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.334 0.666 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.037 0.963 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.106 0.894 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.818 13.129 -7.404 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.012 4.012 4 C -0.164 4.164 5 C -0.100 4.100 6 H 0.090 0.910 7 C -0.063 4.063 8 N -0.327 5.327 9 C -0.050 4.050 10 C -0.005 4.005 11 H 0.138 0.862 12 C -0.064 4.064 13 N -0.184 5.184 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.153 4.153 24 C 0.296 3.704 25 O -0.493 6.493 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.054 0.946 37 H 0.124 0.876 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.255 12.651 -6.241 25.510 hybrid contribution 1.148 -0.343 0.751 1.414 sum -20.107 12.308 -5.490 24.206 Atomic orbital electron populations 1.21784 0.79293 1.03468 1.02478 1.47449 1.08047 1.06671 1.71849 1.21695 0.93365 0.83111 1.03032 1.21932 0.94083 0.99756 1.00608 1.21224 0.94326 0.93808 1.00647 0.90962 1.22070 0.92415 0.93459 0.98397 1.60550 1.11032 1.51606 1.09474 1.21899 0.86862 0.96143 1.00066 1.19257 0.99661 1.00619 0.80967 0.86229 1.29692 0.90106 0.91236 0.95345 1.81044 1.12067 1.11921 1.13401 1.18988 0.88134 0.95597 0.97337 1.21601 0.95964 1.17998 1.22088 0.92987 1.25693 0.97875 0.98812 0.96371 1.70032 1.07834 1.42318 1.36100 0.85668 0.78324 0.79779 0.78948 1.19547 1.19820 1.21072 1.21562 0.88105 1.00352 1.05268 1.20830 0.92077 0.82659 0.74841 1.90679 1.67721 1.37824 1.53076 0.91999 0.92729 0.88397 0.90572 0.88048 0.87347 0.90088 0.93596 0.89387 0.84902 0.94611 0.87573 0.94453 0.97992 0.92713 0.87542 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.24 127.77 1.31 2.32 16 2 N -0.61 -9.84 3.21 -851.59 -2.73 -12.58 16 3 C 0.11 0.89 6.33 86.49 0.55 1.44 16 4 C -0.13 -0.98 5.32 30.69 0.16 -0.81 16 5 C -0.08 -1.09 2.40 -10.66 -0.03 -1.12 16 6 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 7 C 0.07 0.98 5.08 86.30 0.44 1.42 16 8 N -0.70 -15.04 6.22 -513.88 -3.20 -18.23 16 9 C 0.08 2.06 5.12 86.30 0.44 2.50 16 10 C 0.02 0.58 2.42 -12.60 -0.03 0.55 16 11 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 12 C 0.25 9.81 12.98 89.44 1.16 10.97 16 13 N -0.51 -21.49 18.54 20.01 0.37 -21.12 16 14 C 0.04 1.73 4.42 29.85 0.13 1.86 16 15 C -0.54 -28.44 8.60 25.60 0.22 -28.22 16 16 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 17 C 0.01 0.62 5.46 84.66 0.46 1.09 16 18 N -0.92 -52.68 13.29 21.45 0.28 -52.40 16 19 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 C -0.11 -2.15 5.14 29.71 0.15 -2.00 16 24 C 0.51 11.79 7.47 87.72 0.66 12.45 16 25 O -0.61 -20.13 16.18 -3.02 -0.05 -20.18 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 1.06 7.13 -2.38 -0.02 1.04 16 28 H 0.10 0.75 8.01 -2.39 -0.02 0.73 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.38 8.10 -2.39 -0.02 0.36 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 35 H 0.33 7.81 7.81 -89.70 -0.70 7.11 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 41 H 0.11 1.87 8.06 -2.39 -0.02 1.85 16 42 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 Total: -1.00 -70.82 349.98 2.63 -68.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.30 Total: 8.28 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.63 Total: 2.44 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -5.27 Total: -104.33 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.82 2.63 -68.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336723557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.240 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds