Wall clock time and date at job start Tue Mar 31 2020 02:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 115.54901 * 2 1 4 4 C 1.52999 * 117.49942 * 145.66923 * 2 1 3 5 5 C 1.50697 * 117.49949 * 214.98172 * 4 2 1 6 6 O 1.21279 * 120.00042 * 354.18445 * 5 4 2 7 7 N 1.34779 * 119.99844 * 174.18901 * 5 4 2 8 8 C 1.46500 * 119.99956 * 180.02562 * 7 5 4 9 9 C 1.50710 * 109.46752 * 269.99756 * 8 7 5 10 10 H 1.07993 * 119.99678 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99862 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00118 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00055 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46857 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47034 * 119.99988 * 13 11 9 16 16 H 1.48498 * 109.47434 * 240.00432 * 13 11 9 17 17 C 1.46501 * 120.00213 * 359.97438 * 7 5 4 18 18 C 1.53000 * 109.46853 * 270.00116 * 17 7 5 19 19 C 1.53000 * 117.50046 * 243.61981 * 18 17 7 20 20 C 1.53000 * 117.49990 * 174.99615 * 18 17 7 21 21 C 1.53001 * 60.03246 * 107.47536 * 4 2 1 22 22 C 1.53001 * 117.49411 * 107.50261 * 21 4 2 23 23 C 1.52999 * 117.50332 * 252.51945 * 21 4 2 24 24 H 1.08999 * 109.47009 * 325.72136 * 1 2 3 25 25 H 1.09004 * 109.46808 * 85.72287 * 1 2 3 26 26 H 1.08997 * 109.47164 * 205.72021 * 1 2 3 27 27 H 1.09004 * 109.46795 * 207.07365 * 3 2 1 28 28 H 1.08996 * 109.46980 * 327.06788 * 3 2 1 29 29 H 1.08991 * 109.47286 * 87.07505 * 3 2 1 30 30 H 1.09006 * 117.49704 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47329 * 29.99390 * 8 7 5 32 32 H 1.08996 * 109.47648 * 149.99922 * 8 7 5 33 33 H 0.96994 * 120.00104 * 179.97438 * 12 11 9 34 34 H 1.08997 * 109.47386 * 150.00311 * 17 7 5 35 35 H 1.08999 * 109.46956 * 29.99762 * 17 7 5 36 36 H 1.09003 * 115.55278 * 29.33209 * 18 17 7 37 37 H 1.08995 * 117.49439 * 0.02562 * 19 18 17 38 38 H 1.08999 * 117.49819 * 145.02636 * 19 18 17 39 39 H 1.08996 * 117.50315 * 214.97908 * 20 18 17 40 40 H 1.09006 * 117.49657 * 0.02562 * 20 18 17 41 41 H 1.08996 * 109.47523 * 111.39098 * 22 21 4 42 42 H 1.09000 * 109.46917 * 231.39188 * 22 21 4 43 43 H 1.09003 * 109.47337 * 351.38493 * 22 21 4 44 44 H 1.09008 * 109.46600 * 8.61249 * 23 21 4 45 45 H 1.08996 * 109.47053 * 128.60856 * 23 21 4 46 46 H 1.09001 * 109.47316 * 248.61468 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7654 5 6 3.5292 -0.7806 1.4611 6 8 4.0262 0.3160 1.3150 7 7 4.1331 -1.6951 2.2456 8 6 5.3896 -1.3643 2.9225 9 6 6.5504 -1.7304 2.0337 10 1 6.3701 -2.1663 1.0622 11 6 7.8424 -1.5089 2.4610 12 7 8.0619 -0.9785 3.6443 13 14 9.2812 -1.9633 1.3597 14 1 8.7700 -2.5395 0.0901 15 1 10.0816 -0.7478 1.0642 16 1 10.1357 -2.9632 2.0490 17 6 3.5325 -3.0196 2.4225 18 6 2.5833 -2.9930 3.6222 19 6 2.9319 -3.8806 4.8187 20 6 1.7644 -4.2545 3.9032 21 6 2.2367 -1.1221 -0.7646 22 6 3.5495 -0.7782 -1.4711 23 6 1.3589 -2.1577 -1.4703 24 1 -0.3633 0.8492 0.5788 25 1 -0.3633 0.0766 -1.0249 26 1 -0.3633 -0.9258 0.4460 27 1 3.1722 1.3135 -0.4678 28 1 1.5684 2.0802 -0.5587 29 1 2.2993 1.7308 1.0262 30 1 1.6112 -1.8578 1.2693 31 1 5.4175 -0.2956 3.1347 32 1 5.4571 -1.9221 3.8564 33 1 8.9709 -0.8230 3.9450 34 1 4.3183 -3.7545 2.5972 35 1 2.9761 -3.2890 1.5248 36 1 2.1131 -2.0315 3.8285 37 1 3.8377 -4.4831 4.7513 38 1 2.6912 -3.5030 5.8124 39 1 0.7557 -4.1229 4.2947 40 1 1.9022 -5.1035 3.2336 41 1 3.9369 -1.6662 -1.9705 42 1 3.3710 0.0045 -2.2085 43 1 4.2758 -0.4276 -0.7378 44 1 0.7294 -2.6610 -0.7363 45 1 0.7297 -1.6589 -2.2074 46 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073382467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:02 Heat of formation + Delta-G solvation = 1.569716 kcal Electronic energy + Delta-G solvation = -23373.240495 eV Core-core repulsion = 20264.211838 eV Total energy + Delta-G solvation = -3109.028658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.25033 -37.87160 -36.77082 -34.29376 -32.50259 -30.95633 -28.67212 -28.34899 -27.30635 -26.05126 -25.78897 -23.32312 -22.16847 -21.02013 -20.36363 -17.99730 -17.56746 -16.43120 -16.35469 -15.61271 -14.85724 -14.75353 -14.48446 -14.22196 -13.96969 -13.57378 -13.15530 -12.83970 -12.50373 -12.31727 -12.27038 -12.24093 -12.14812 -11.76865 -11.59900 -11.47193 -11.45866 -11.32543 -11.25451 -11.18596 -10.84414 -10.62390 -10.47248 -10.25856 -10.08619 -9.70490 -9.55219 -9.43753 -9.23027 -8.54384 -8.40728 -7.57938 -6.01327 -4.05584 3.20100 3.30574 3.38293 3.42198 3.83482 4.02533 4.16120 4.46457 4.79310 4.87515 4.94167 5.03684 5.13175 5.18368 5.25376 5.32034 5.32880 5.55062 5.64248 5.69010 5.70110 5.75948 5.80174 5.85733 5.92377 5.97736 6.06986 6.07391 6.09737 6.13250 6.18632 6.26014 6.28660 6.29260 6.36137 6.51019 6.52353 6.69599 6.94079 7.16411 7.50485 7.63196 7.96210 8.28020 8.52233 8.95265 9.20742 9.59652 11.06686 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.006664 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.181512 B = 4200.587113 C = 5411.554503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.178 4.178 5 C 0.538 3.462 6 O -0.535 6.535 7 N -0.592 5.592 8 C 0.248 3.752 9 C -0.522 4.522 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.144 3.856 18 C -0.166 4.166 19 C -0.174 4.174 20 C -0.182 4.182 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.112 4.112 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -4.343 -5.295 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.162 4.162 4 C -0.199 4.199 5 C 0.325 3.675 6 O -0.413 6.413 7 N -0.322 5.322 8 C 0.129 3.871 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.020 3.980 18 C -0.185 4.185 19 C -0.211 4.211 20 C -0.220 4.220 21 C -0.097 4.097 22 C -0.185 4.185 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.293 -3.705 -5.232 16.582 hybrid contribution 0.855 -0.469 -0.268 1.011 sum -14.438 -4.173 -5.500 16.004 Atomic orbital electron populations 1.21323 0.92309 1.01719 1.01500 1.21633 0.93861 0.91852 1.02007 1.21360 1.00173 0.92178 1.02467 1.22872 0.98759 1.03539 0.94776 1.19361 0.84340 0.84598 0.79196 1.90645 1.65968 1.22314 1.62357 1.48119 1.24858 1.12074 1.47131 1.19246 0.78218 0.97685 0.91956 1.21480 0.90711 1.41149 1.02745 0.92475 1.24923 0.98803 0.95182 0.95190 1.69946 1.20933 1.43973 1.18574 0.86491 0.82402 0.78124 0.80697 1.19819 1.20919 1.21020 1.20986 0.95246 0.86541 0.95260 1.22923 1.01932 0.95190 0.98497 1.22992 0.99384 1.03616 0.95154 1.22916 0.96033 0.99039 1.03983 1.21616 0.98243 0.99307 0.90550 1.21508 0.95157 1.00988 1.00804 1.21343 0.98569 0.97146 0.99814 0.92236 0.92217 0.92640 0.90700 0.94142 0.91690 0.86805 0.94022 0.95070 0.92859 0.90068 0.91132 0.88037 0.88473 0.89211 0.89238 0.88897 0.92636 0.92380 0.89985 0.92521 0.92175 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.84 37.16 0.33 -0.91 16 2 C -0.09 -1.34 2.70 -154.47 -0.42 -1.75 16 3 C -0.10 -1.68 7.92 37.16 0.29 -1.38 16 4 C -0.18 -2.85 4.26 -91.77 -0.39 -3.24 16 5 C 0.54 11.20 6.27 -10.99 -0.07 11.13 16 6 O -0.53 -12.96 11.47 5.56 0.06 -12.90 16 7 N -0.59 -12.63 2.46 -175.06 -0.43 -13.06 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 9 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C 0.14 2.43 5.31 -4.04 -0.02 2.41 16 18 C -0.17 -2.42 5.74 -90.62 -0.52 -2.94 16 19 C -0.17 -2.35 10.18 -26.73 -0.27 -2.63 16 20 C -0.18 -2.10 10.25 -26.73 -0.27 -2.37 16 21 C -0.10 -1.38 2.70 -154.47 -0.42 -1.80 16 22 C -0.13 -2.04 8.17 37.16 0.30 -1.74 16 23 C -0.11 -1.24 8.88 37.16 0.33 -0.91 16 24 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.06 0.58 8.02 -51.93 -0.42 0.17 16 26 H 0.05 0.56 7.77 -51.93 -0.40 0.16 16 27 H 0.07 1.34 5.10 -51.93 -0.26 1.08 16 28 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.06 1.16 7.34 -51.93 -0.38 0.78 16 30 H 0.11 1.62 6.56 -51.93 -0.34 1.28 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 1.44 7.81 -51.93 -0.41 1.03 16 35 H 0.07 1.05 6.53 -51.93 -0.34 0.71 16 36 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.82 7.92 -51.93 -0.41 0.41 16 42 H 0.06 0.84 7.97 -51.93 -0.41 0.42 16 43 H 0.08 1.64 5.10 -51.93 -0.26 1.38 16 44 H 0.06 0.57 7.78 -51.92 -0.40 0.17 16 45 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 46 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -31.21 361.50 -8.94 -40.16 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.17 Total: 2.51 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.57 Total: -13.10 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.31 Total: -39.08 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.06 Total: -12.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.21 -8.94 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073382467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.728 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds