Wall clock time and date at job start Tue Mar 31 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.52999 * 109.47447 * 179.97438 * 9 8 5 11 11 C 1.52998 * 109.47339 * 300.00301 * 10 9 8 12 12 C 1.53001 * 109.46706 * 60.00286 * 10 9 8 13 13 C 1.52998 * 109.47233 * 179.97438 * 10 9 8 14 14 C 1.50694 * 109.47048 * 180.02562 * 13 10 9 15 15 H 1.07997 * 120.00525 * 0.02562 * 14 13 10 16 16 C 1.37884 * 120.00035 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47006 * 90.00345 * 18 16 14 20 20 H 1.48501 * 109.46908 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47478 * 329.99928 * 18 16 14 22 22 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 23 23 C 1.50695 * 125.79226 * 179.97438 * 22 4 3 24 24 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 27 27 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 28 28 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 31 31 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 32 32 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 33 33 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 34 34 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 35 35 H 1.08998 * 109.47144 * 59.99265 * 11 10 9 36 36 H 1.08994 * 109.47268 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46886 * 299.99780 * 11 10 9 38 38 H 1.08996 * 109.47411 * 59.99884 * 12 10 9 39 39 H 1.09003 * 109.46956 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46943 * 300.00029 * 12 10 9 41 41 H 1.08996 * 109.47350 * 300.00401 * 13 10 9 42 42 H 1.09001 * 109.46830 * 60.00320 * 13 10 9 43 43 H 0.96995 * 120.00117 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.47797 * 179.97438 * 23 22 4 45 45 H 1.09006 * 109.47078 * 299.99936 * 23 22 4 46 46 H 1.09005 * 109.47246 * 59.99506 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4169 4.7798 1.7435 11 6 4.8379 5.6816 0.6515 12 6 4.3799 4.5918 2.8526 13 6 6.6747 5.4269 2.3264 14 6 6.3221 6.7676 2.9173 15 1 5.3027 7.1224 2.8812 16 6 7.3009 7.5413 3.5042 17 7 8.5424 7.1095 3.5478 18 14 6.8636 9.2028 4.2374 19 1 6.4918 9.0315 5.6649 20 1 8.0335 10.1118 4.1363 21 1 5.7179 9.7859 3.4940 22 6 3.5814 -0.7122 -0.0015 23 6 4.7705 -1.6379 -0.0030 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3634 0.5135 -0.8901 28 1 1.9665 2.1205 -0.0004 29 1 6.2623 2.2872 -1.4392 30 1 5.5907 0.6974 -1.8737 31 1 4.5869 2.1593 -2.0272 32 1 4.1292 3.4024 -0.0930 33 1 6.1875 2.7756 1.9217 34 1 6.5134 3.5525 0.3538 35 1 3.9418 5.2203 0.2366 36 1 4.5825 6.6513 1.0786 37 1 5.5767 5.8154 -0.1387 38 1 4.7923 3.9494 3.6306 39 1 4.1245 5.5618 3.2794 40 1 3.4836 4.1305 2.4377 41 1 7.0868 4.7844 3.1044 42 1 7.4138 5.5608 1.5365 43 1 9.2309 7.6536 3.9610 44 1 4.4260 -2.6720 -0.0030 45 1 5.3723 -1.4549 -0.8933 46 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229693965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:26 Heat of formation + Delta-G solvation = -15.483334 kcal Electronic energy + Delta-G solvation = -22279.038811 eV Core-core repulsion = 19169.270678 eV Total energy + Delta-G solvation = -3109.768133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55258 -37.99793 -35.72041 -32.98361 -32.83541 -31.92815 -29.60257 -29.12527 -26.84573 -26.29034 -25.29316 -24.73514 -23.07853 -22.16300 -20.65684 -19.29782 -17.74161 -16.41544 -16.24569 -16.19095 -15.02048 -14.89768 -14.42489 -14.30388 -13.70059 -13.51644 -13.45530 -13.05680 -13.02416 -12.91403 -12.78176 -12.70470 -12.49804 -12.28574 -11.97445 -11.84808 -11.68140 -11.42742 -11.04283 -10.95576 -10.84284 -10.73692 -10.46417 -10.23278 -10.10156 -9.65663 -9.45105 -8.98229 -8.80477 -8.29620 -8.14391 -7.95894 -5.94284 -3.94168 1.75667 2.69774 2.95041 3.34749 3.41195 3.43959 4.42038 4.53327 4.64662 4.86962 5.00944 5.07933 5.24927 5.31554 5.32469 5.33881 5.36501 5.41579 5.49989 5.60946 5.67028 5.75254 5.78387 5.80890 5.99062 6.04761 6.07181 6.24854 6.26952 6.32693 6.38897 6.55072 6.66012 6.70550 6.83681 6.86768 7.23494 7.24647 7.29683 7.30718 7.48054 7.71630 7.75919 7.88944 8.06338 8.51047 9.11291 9.68488 11.17445 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.003419 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.271371 B = 8188.208285 C = 8663.058164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.034 4.034 3 C -0.177 4.177 4 C -0.147 4.147 5 C 0.151 3.849 6 H 0.081 0.919 7 C -0.176 4.176 8 N -0.676 5.676 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.029 4.029 23 C -0.070 4.070 24 O -0.179 6.179 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.339 0.661 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.258 0.742 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -15.758 -9.734 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.149 4.149 5 C 0.041 3.959 6 H 0.099 0.901 7 C -0.235 4.235 8 N -0.307 5.307 9 C -0.058 4.058 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.003 4.003 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.079 4.079 23 C -0.126 4.126 24 O -0.077 6.077 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.558 -16.253 -9.068 21.908 hybrid contribution 0.473 1.434 -0.321 1.544 sum -11.085 -14.818 -9.389 20.751 Atomic orbital electron populations 1.20228 0.85488 1.03434 1.03391 1.22297 0.93750 0.84267 1.08002 1.21324 0.91937 0.99259 1.07149 1.20106 0.95692 0.92390 1.06678 1.19786 0.92242 0.90449 0.93466 0.90056 1.22452 1.01476 1.01977 0.97550 1.60562 1.27856 1.03424 1.38895 1.22134 0.89695 0.96399 0.97566 1.20619 0.98472 0.91734 0.94986 1.21761 0.98338 1.00487 0.97970 1.21592 0.97536 1.00699 0.97439 1.19116 0.90736 0.95057 0.95427 1.21246 0.94472 1.02382 1.36331 0.92309 1.25017 0.95103 0.98022 0.96474 1.69966 1.00737 1.37853 1.45246 0.86667 0.77835 0.84337 0.79600 1.20790 1.21417 1.19951 1.22024 0.83204 0.94144 1.08506 1.20251 0.91565 0.97410 1.03404 1.83915 1.16231 1.35051 1.72476 0.91073 0.89865 0.90052 0.83565 0.92116 0.92465 0.92488 0.84163 0.91666 0.95815 0.94865 0.91771 0.94137 0.94243 0.92799 0.93885 0.96727 0.96949 0.93195 0.90983 0.90072 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.42 36.00 0.38 -0.18 16 2 C -0.03 -0.41 7.32 -35.63 -0.26 -0.67 16 3 C -0.18 -2.32 10.26 -39.70 -0.41 -2.73 16 4 C -0.15 -1.95 5.26 -104.74 -0.55 -2.50 16 5 C 0.15 1.97 2.79 -68.86 -0.19 1.78 16 6 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 7 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 8 N -0.68 -10.03 5.04 -107.95 -0.54 -10.57 16 9 C 0.07 1.22 4.44 -3.83 -0.02 1.21 16 10 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 11 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 12 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 13 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 14 C -0.51 -13.91 7.65 -34.44 -0.26 -14.18 16 15 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.03 -0.36 7.32 -35.63 -0.26 -0.62 16 23 C -0.07 -0.62 10.03 36.00 0.36 -0.26 16 24 O -0.18 -2.36 10.65 5.71 0.06 -2.30 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 30 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.34 4.86 6.51 -39.29 -0.26 4.60 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 35 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 36 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 40 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -30.68 364.62 -8.05 -38.73 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.19 Total: 1.16 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -0.59 Total: -22.95 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.19 Total: -36.81 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.06 Total: -2.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.68 -8.05 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds