Wall clock time and date at job start Tue Mar 31 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.52999 * 109.47447 * 179.97438 * 9 8 5 11 11 C 1.52998 * 109.47339 * 300.00301 * 10 9 8 12 12 C 1.53001 * 109.46706 * 60.00286 * 10 9 8 13 13 C 1.52998 * 109.47233 * 179.97438 * 10 9 8 14 14 C 1.50694 * 109.47048 * 180.02562 * 13 10 9 15 15 H 1.07997 * 120.00525 * 0.02562 * 14 13 10 16 16 C 1.37884 * 120.00035 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99916 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47006 * 90.00345 * 18 16 14 20 20 H 1.48501 * 109.46908 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47478 * 329.99928 * 18 16 14 22 22 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 23 23 C 1.50695 * 125.79226 * 179.97438 * 22 4 3 24 24 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 27 27 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 28 28 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 31 31 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 32 32 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 33 33 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 34 34 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 35 35 H 1.08998 * 109.47144 * 59.99265 * 11 10 9 36 36 H 1.08994 * 109.47268 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.46886 * 299.99780 * 11 10 9 38 38 H 1.08996 * 109.47411 * 59.99884 * 12 10 9 39 39 H 1.09003 * 109.46956 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46943 * 300.00029 * 12 10 9 41 41 H 1.08996 * 109.47350 * 300.00401 * 13 10 9 42 42 H 1.09001 * 109.46830 * 60.00320 * 13 10 9 43 43 H 0.96995 * 120.00117 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.47797 * 179.97438 * 23 22 4 45 45 H 1.09006 * 109.47078 * 299.99936 * 23 22 4 46 46 H 1.09005 * 109.47246 * 59.99506 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4169 4.7798 1.7435 11 6 4.8379 5.6816 0.6515 12 6 4.3799 4.5918 2.8526 13 6 6.6747 5.4269 2.3264 14 6 6.3221 6.7676 2.9173 15 1 5.3027 7.1224 2.8812 16 6 7.3009 7.5413 3.5042 17 7 8.5424 7.1095 3.5478 18 14 6.8636 9.2028 4.2374 19 1 6.4918 9.0315 5.6649 20 1 8.0335 10.1118 4.1363 21 1 5.7179 9.7859 3.4940 22 6 3.5814 -0.7122 -0.0015 23 6 4.7705 -1.6379 -0.0030 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3634 0.5135 -0.8901 28 1 1.9665 2.1205 -0.0004 29 1 6.2623 2.2872 -1.4392 30 1 5.5907 0.6974 -1.8737 31 1 4.5869 2.1593 -2.0272 32 1 4.1292 3.4024 -0.0930 33 1 6.1875 2.7756 1.9217 34 1 6.5134 3.5525 0.3538 35 1 3.9418 5.2203 0.2366 36 1 4.5825 6.6513 1.0786 37 1 5.5767 5.8154 -0.1387 38 1 4.7923 3.9494 3.6306 39 1 4.1245 5.5618 3.2794 40 1 3.4836 4.1305 2.4377 41 1 7.0868 4.7844 3.1044 42 1 7.4138 5.5608 1.5365 43 1 9.2309 7.6536 3.9610 44 1 4.4260 -2.6720 -0.0030 45 1 5.3723 -1.4549 -0.8933 46 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229693965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:25 Heat of formation + Delta-G solvation = -32.105216 kcal Electronic energy + Delta-G solvation = -22279.759590 eV Core-core repulsion = 19169.270678 eV Total energy + Delta-G solvation = -3110.488912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.47672 -39.42759 -37.08381 -34.62157 -33.77853 -33.32668 -30.50355 -30.15152 -28.77220 -27.88667 -26.72066 -25.67998 -24.58011 -23.50857 -21.67621 -20.37615 -19.28584 -18.32093 -17.36063 -17.16257 -16.59266 -16.25517 -15.83820 -15.58993 -14.92479 -14.61001 -14.55969 -14.27022 -14.10574 -14.01175 -13.88511 -13.77016 -13.51725 -13.41889 -13.33689 -13.12129 -12.81570 -12.73759 -12.64437 -12.46706 -12.37847 -12.26415 -12.11698 -11.95638 -11.87637 -11.37760 -10.85955 -10.75158 -10.49721 -10.39099 -9.26780 -8.95345 -8.13304 -6.20130 0.85208 1.41297 1.41783 1.52322 1.74524 2.11799 2.44315 3.20630 3.26605 3.84246 3.93565 4.09615 4.19529 4.21280 4.35737 4.37417 4.40164 4.45100 4.52701 4.66737 4.71699 4.76469 4.78359 4.82786 4.84686 4.91779 4.96887 5.05011 5.08818 5.11726 5.15915 5.22174 5.24661 5.30562 5.46607 5.52687 5.54832 5.59061 5.67344 5.74483 5.88623 5.93762 6.16028 6.34614 6.39302 6.56519 6.95019 7.47087 8.99087 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.003419 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.271371 B = 8188.208285 C = 8663.058164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.165 4.165 5 C 0.154 3.846 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.674 5.674 9 C 0.085 3.915 10 C -0.054 4.054 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.041 3.959 14 C -0.514 4.514 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.036 4.036 23 C -0.071 4.071 24 O -0.191 6.191 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.344 0.656 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.065 0.935 41 H -0.017 1.017 42 H -0.015 1.015 43 H 0.259 0.741 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -16.125 -10.512 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.219 4.219 4 C -0.167 4.167 5 C 0.044 3.956 6 H 0.096 0.904 7 C -0.228 4.228 8 N -0.305 5.305 9 C -0.044 4.044 10 C -0.054 4.054 11 C -0.178 4.178 12 C -0.163 4.163 13 C 0.004 3.996 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.086 4.086 23 C -0.127 4.127 24 O -0.089 6.089 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.166 0.834 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.382 -16.627 -9.857 23.510 hybrid contribution 1.020 1.480 -0.089 1.799 sum -12.362 -15.147 -9.946 21.936 Atomic orbital electron populations 1.20394 0.82924 1.04526 1.04615 1.22974 0.95293 0.83740 1.06649 1.21478 0.92206 0.99753 1.08437 1.20176 0.95725 0.92912 1.07877 1.19762 0.92387 0.89220 0.94211 0.90448 1.22372 1.01103 1.02789 0.96507 1.60469 1.26371 1.04085 1.39606 1.21819 0.90668 0.94748 0.97208 1.20481 0.96080 0.93219 0.95662 1.21667 0.99541 0.99401 0.97195 1.21490 0.98108 0.99745 0.96950 1.18991 0.92496 0.94437 0.93719 1.21624 0.94712 1.03113 1.35760 0.91652 1.25916 0.94997 1.02058 0.97123 1.70106 1.01869 1.39491 1.46467 0.85583 0.77842 0.79591 0.78877 1.20202 1.21222 1.18641 1.22587 0.83750 0.94585 1.07704 1.20393 0.90525 0.97499 1.04261 1.83934 1.16704 1.35678 1.72595 0.90061 0.88920 0.88414 0.83364 0.92679 0.90922 0.92327 0.83618 0.92781 0.95992 0.91579 0.93515 0.94344 0.95378 0.94285 0.91608 0.99886 0.99657 0.93177 0.89739 0.88630 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.23 0.74 -0.21 16 2 C -0.04 -0.84 7.32 24.83 0.18 -0.66 16 3 C -0.20 -4.93 10.26 22.19 0.23 -4.71 16 4 C -0.17 -4.16 5.26 -19.94 -0.10 -4.27 16 5 C 0.15 3.84 2.79 44.17 0.12 3.96 16 6 H 0.08 1.98 7.68 -2.39 -0.02 1.96 16 7 C -0.17 -3.61 9.14 71.98 0.66 -2.95 16 8 N -0.67 -19.11 5.04 -495.45 -2.50 -21.60 16 9 C 0.08 2.92 4.44 86.30 0.38 3.30 16 10 C -0.05 -2.16 0.60 -52.18 -0.03 -2.20 16 11 C -0.12 -4.37 7.89 71.98 0.57 -3.80 16 12 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 13 C 0.04 2.15 4.04 29.85 0.12 2.27 16 14 C -0.51 -28.64 7.65 25.60 0.20 -28.44 16 15 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 16 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 17 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 18 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.04 -0.86 7.32 24.83 0.18 -0.68 16 23 C -0.07 -1.13 10.03 71.23 0.71 -0.42 16 24 O -0.19 -4.77 10.65 -2.47 -0.03 -4.79 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 30 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.34 9.17 6.51 -89.69 -0.58 8.59 16 33 H 0.05 1.98 8.06 -2.38 -0.02 1.96 16 34 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 35 H 0.07 1.95 6.57 -2.39 -0.02 1.93 16 36 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 40 H 0.07 2.25 7.60 -2.38 -0.02 2.23 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.10 1.24 8.05 -2.38 -0.02 1.22 16 46 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -66.53 364.62 5.15 -61.38 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.36 Total: 17.77 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 5.00 Total: -42.12 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.21 Total: -78.97 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.03 Total: -4.79 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.53 5.15 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229693965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.277 kcal (2) G-P(sol) polarization free energy of solvation -66.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds