Wall clock time and date at job start Tue Mar 31 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47046 * 300.00147 * 3 2 1 6 6 H 1.48504 * 109.47019 * 59.99877 * 3 2 1 7 7 C 1.37881 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45848 * 179.97438 * 9 7 2 11 11 C 1.53184 * 109.31562 * 178.62897 * 10 9 7 12 12 N 1.46930 * 108.77604 * 54.63195 * 11 10 9 13 13 C 1.34778 * 120.62751 * 126.36990 * 12 11 10 14 14 O 1.21279 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99737 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47191 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47415 * 175.00056 * 16 15 13 18 18 C 1.53000 * 109.47233 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.47232 * 294.99929 * 16 15 13 22 22 C 1.46918 * 118.74012 * 306.64635 * 12 11 10 23 23 C 1.52765 * 109.00747 * 53.30481 * 22 12 11 24 24 H 0.96999 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46428 * 299.96660 * 9 7 2 26 26 H 1.09001 * 109.49480 * 58.67143 * 10 9 7 27 27 H 1.09007 * 109.52282 * 298.59804 * 10 9 7 28 28 H 1.09002 * 109.58435 * 294.84673 * 11 10 9 29 29 H 1.09002 * 109.70660 * 174.48930 * 11 10 9 30 30 H 1.09000 * 109.47355 * 60.00104 * 15 13 12 31 31 H 1.09001 * 109.47069 * 299.99896 * 15 13 12 32 32 H 1.09002 * 109.47497 * 54.99704 * 16 15 13 33 33 H 1.08992 * 109.47063 * 59.99950 * 17 16 15 34 34 H 1.09004 * 109.46733 * 299.99664 * 17 16 15 35 35 H 1.09002 * 109.47398 * 59.99826 * 18 17 16 36 36 H 1.09001 * 109.47194 * 180.02562 * 18 17 16 37 37 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 39 39 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 41 41 H 1.09002 * 109.47153 * 299.99992 * 21 16 15 42 42 H 1.09001 * 109.47289 * 60.00075 * 21 16 15 43 43 H 1.08996 * 109.58975 * 173.14195 * 22 12 11 44 44 H 1.08997 * 109.58938 * 293.57099 * 22 12 11 45 45 H 1.09000 * 109.56230 * 185.54887 * 23 22 12 46 46 H 1.09008 * 109.38350 * 65.52023 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6623 0.0005 11 6 1.4766 -4.9866 0.0351 12 7 0.5223 -5.0087 -1.0819 13 6 0.5122 -6.0344 -1.9561 14 8 1.2960 -6.9506 -1.8252 15 6 -0.4723 -6.0423 -3.0970 16 6 -0.2736 -7.3078 -3.9335 17 6 -1.3522 -7.3782 -5.0163 18 6 -1.1538 -8.6441 -5.8524 19 6 0.2272 -8.6098 -6.5098 20 6 1.3059 -8.5395 -5.4271 21 6 1.1075 -7.2730 -4.5909 22 6 -0.4164 -3.8885 -1.2312 23 6 0.3702 -2.5790 -1.2484 24 1 -0.4851 0.8400 -0.0004 25 1 0.6244 -2.5568 0.8906 26 1 2.8881 -3.5915 0.8782 27 1 2.8561 -3.6195 -0.9015 28 1 0.9370 -5.0713 0.9784 29 1 2.1735 -5.8190 -0.0632 30 1 -0.3105 -5.1645 -3.7227 31 1 -1.4877 -6.0238 -2.7009 32 1 -0.3474 -8.1843 -3.2896 33 1 -1.2784 -6.5018 -5.6602 34 1 -2.3362 -7.4031 -4.5479 35 1 -1.2280 -9.5203 -5.2082 36 1 -1.9220 -8.6940 -6.6241 37 1 0.3685 -9.5114 -7.1058 38 1 0.3014 -7.7336 -7.1540 39 1 2.2899 -8.5146 -5.8955 40 1 1.2318 -9.4157 -4.7830 41 1 1.1814 -6.3966 -5.2348 42 1 1.8760 -7.2229 -3.8196 43 1 -0.9666 -3.9949 -2.1661 44 1 -1.1135 -3.8817 -0.3934 45 1 -0.3224 -1.7374 -1.2597 46 1 0.9978 -2.5456 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:37 Heat of formation + Delta-G solvation = -79.582162 kcal Electronic energy + Delta-G solvation = -22707.682372 eV Core-core repulsion = 19595.134705 eV Total energy + Delta-G solvation = -3112.547667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98313 -38.32075 -36.67856 -33.51540 -32.73720 -31.18819 -30.71160 -30.08345 -27.40107 -25.84182 -23.05300 -22.59551 -22.36820 -21.42267 -19.85799 -19.53764 -18.15855 -16.86652 -16.13509 -15.44592 -15.38269 -15.07803 -14.55336 -14.17816 -14.10810 -13.94458 -13.31462 -13.11603 -12.88802 -12.68024 -12.42170 -12.25804 -12.11884 -11.89662 -11.60409 -11.46765 -11.30449 -11.11168 -10.97844 -10.93026 -10.62001 -10.43691 -10.37886 -10.21211 -10.08468 -10.01693 -9.64604 -9.21991 -9.15941 -8.91774 -8.39867 -7.96741 -6.05188 -4.11133 3.04553 3.25790 3.34444 3.38629 3.52654 4.39422 4.63968 4.68781 4.71717 4.97072 5.12911 5.23630 5.25395 5.32172 5.47816 5.50136 5.52183 5.59952 5.64235 5.72149 5.79135 5.83145 5.89624 5.96568 5.99371 6.08237 6.11413 6.15541 6.18179 6.19861 6.28284 6.32357 6.46144 6.53945 6.57229 6.66599 6.90281 7.03648 7.15104 7.26918 7.65155 7.90223 7.97418 8.02707 8.38588 8.63031 8.92604 9.54127 11.00345 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028882 B = 0.003621 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.219365 B = 7730.831556 C = 7955.500311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.602 5.602 13 C 0.511 3.489 14 O -0.557 6.557 15 C -0.137 4.137 16 C -0.068 4.068 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.121 4.121 22 C 0.103 3.897 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -13.364 -9.349 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.334 5.334 13 C 0.299 3.701 14 O -0.437 6.437 15 C -0.176 4.176 16 C -0.087 4.087 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.019 4.019 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.627 -13.700 -9.262 16.930 hybrid contribution 0.339 1.188 0.026 1.235 sum -3.288 -12.512 -9.237 15.896 Atomic orbital electron populations 1.69843 1.05842 1.26349 1.51081 1.24962 0.94877 0.99068 0.95093 0.86562 0.80206 0.83834 0.77562 1.19832 1.21052 1.21054 1.21252 0.92992 0.90579 1.50082 0.92670 1.18631 0.92652 0.91746 0.93967 1.21999 0.98900 0.94301 1.00908 1.21668 0.91838 0.99597 0.87993 1.48284 1.36115 1.21065 1.27944 1.20599 0.84695 0.81677 0.83103 1.90592 1.41869 1.36410 1.74830 1.21761 0.99338 1.00393 0.96154 1.20887 0.95188 0.97059 0.95575 1.21612 0.98320 0.98095 0.97307 1.21504 0.96886 0.98174 0.98925 1.21555 0.95044 1.01320 0.97836 1.21507 0.98024 0.98682 0.97190 1.21720 0.97697 0.97060 0.99311 1.21944 0.91731 0.87547 1.00662 1.21944 1.00114 0.94703 0.99571 0.93042 0.95494 0.92242 0.93027 0.92413 0.90413 0.89033 0.89288 0.90654 0.91925 0.92095 0.92116 0.92326 0.92534 0.92188 0.92427 0.92148 0.92773 0.89790 0.91419 0.92054 0.87758 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 11.30 55.43 0.63 -23.62 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 11 C 0.11 2.05 6.44 -3.71 -0.02 2.03 16 12 N -0.60 -10.71 2.98 -173.04 -0.52 -11.23 16 13 C 0.51 8.66 7.42 -10.99 -0.08 8.57 16 14 O -0.56 -10.75 13.38 5.56 0.07 -10.67 16 15 C -0.14 -1.79 3.52 -27.89 -0.10 -1.88 16 16 C -0.07 -0.83 1.84 -90.62 -0.17 -0.99 16 17 C -0.12 -1.14 5.20 -26.73 -0.14 -1.28 16 18 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 19 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 20 C -0.12 -1.27 5.93 -26.71 -0.16 -1.43 16 21 C -0.12 -1.54 4.95 -26.71 -0.13 -1.68 16 22 C 0.10 1.81 6.31 -3.93 -0.02 1.79 16 23 C -0.12 -2.71 5.14 -26.83 -0.14 -2.85 16 24 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 30 H 0.09 1.15 7.68 -51.93 -0.40 0.75 16 31 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.31 5.95 -51.93 -0.31 1.00 16 43 H 0.07 1.00 5.93 -51.93 -0.31 0.69 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 46 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -28.04 345.02 -10.04 -38.08 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.40 Total: 0.77 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.00 Total: -14.26 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.11 Total: -34.85 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.04 -10.04 -38.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.502 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds